BAC Information

Click to search

BAC

Clone NameB6Ng01-227P02
Chromosome2 (Build37)
Map Location 164,381,128 - 164,499,118
singlet/doubletdoublet
Overlap geneLOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761
Upstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
Downstream geneWfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227P02.bB6Ng01-227P02.g
ACCGA041482GA041483
length1,0741,090
definitionB6Ng01-227P02.b B6Ng01-227P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,497,969 - 164,499,118)(164,381,128 - 164,382,218)
sequence
gaattccaggatagccagagctatacagagaaacattgtctcaaaaaaag
aaaaaaagagttgactctttaagatgtcaaggtcataagagatgagaggt
ttctggctgtccggagaaggtggattactgaaggtagatgccatcgtagt
ctgttttatcaatgtccgacccaatgaagttggtaaatatgtcatgtcca
tgtaagagaatgaccttttggtaaaagacactcactgaagtatttggaaa
tgagggcaacaaatcaaatcaagtctctgtctttctccgtgacacttcca
tacatacataaaattgcacctcaccctctttattttcaagacagggtctc
actatgtagccctggctgacctggaactccattcatagatcagactagct
tcaaactcacagaggttggcctgcctctgcttcctgagtgctgggattaa
aggtgtgtgccaccaagccgagcacgtaccttgctcttttaatttatttt
ttttgagatttatttatttatttttattttcatgcctgtgagtggtcagc
ctgcctgtctgactatgcaccatgtgcatgcagtacctatggaggtcaga
agagggagcaagattcctcctagaactggagttttcaaaggttgtgagct
gccatgtgggtgctgggaatccaacctgagtcctctggaagagcagcctg
tgttcttacccacggagccatctctccctgggccttgctgataatgtcct
ccaggtcctctccatccctcctccctttgcttgtctggtcctccctctaa
ggagatatttcatcttctctctctctctctctctctctctctcacacaca
cacacacacacaggagagagtgtatatagtgtaatctatagtctgtgtat
aagaggtgatatttagtcttcctgtcctccattaactcccttgtgttccc
ctcccttccattagaatctttcccgcccactcattaatggccttctgctt
ttatgccataatataagctatacatttatctattacatattatccatatt
tctaatttatacataatgtataat
gaattctaggatacagccaggtacagggagatcagtccagaagatgtgag
gagacagatgtctggtacctgagcacaggtaacgagctatgtggcaggat
gtaggttaaaataagtgggttctcttaaattatgattctagtcagagaag
agcttagctgtgtggccaggatattcgtaagtatattttgagtctgagac
ctatttctgggaacatggggccgggagacagaacccggcataacttcaac
acaggagccccacacttctcacacagccacagaggactgagccatgcaac
acctccttctgcctgcatctaggctgtatgagtctaaccctagttctaac
ccaggggctcctcaagatacacgtcaagacatggccaggcccttaccttt
cagatactctgactaagcttgtgcattcttctctccatcttcctggtgaa
atggtccttatcacctgaactctctaaattcccctacaaaggaatctctg
cacccttgttcttcctgcccagttagctgccctcttccctatctttcttt
gaacagcatctcagaagtatctgaacccacatttcctgacctgcaattcc
taaggccccaggaaaatcttactcttgcagaggctgagtcgaccaggaaa
gttatgaaagaggtgtgaagatgcagcaggcccttctcccttcctgatag
aactagggatgggtttcactgcgggcaactaaaatattactgacttggct
tggttcatagaatggaagggaaggttaaaaggcaccctgccttgtaaggg
tggcaaggcagaagaactgaggccttcccaggacacctgtgagggagctg
gggtcttctgctgtcctttgttcaagactaatatccccagaacagcatgt
gattggctgcgctttgtctgggtagagaagcgctttgcatgaccatcctg
cccgctatcctgatgtagagacattcctaacccaaataaatcaagcgctt
catcagaagaagagatagaccgccatgctgggggtggtcaacaaaataac
cgatacgttcagaatgagatagacgcatggtgggtggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164497969_164499118
seq2: B6Ng01-227P02.b_45_1118 (reverse)

seq1  ATTATACATTATGACTTATAAATTATATATTTATATAAAATATTATGTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTAATACTGTTATTATATGTGTTACATATTATAATATAATGTATAATA  100
                                   ||||| | || |||||||| |
seq2  -----------------------------ATTAT-ACATTATGTATAA-A  19

seq1  TAAGAAATAT-GATAATATGTAATAGATAAATGTATAGCTTATA-TATGG  148
      | |||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TTAGAAATATGGATAATATGTAATAGATAAATGTATAGCTTATATTATGG  69

seq1  CATAAAAGCAGAAGG-CATTAATGAGTGGGCGGGAAAGA-TCTAATGGAA  196
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CATAAAAGCAGAAGGCCATTAATGAGTGGGCGGGAAAGATTCTAATGGAA  119

seq1  GGGAGGGGAACACAAGGGAG-TAATGGAGGACAGGAAGACTAAATATCAC  245
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGAGGGGAACACAAGGGAGTTAATGGAGGACAGGAAGACTAAATATCAC  169

seq1  CTCTTATACACAGACTATAGATTACACTATATACACTCTCTCCTGTGTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATACACAGACTATAGATTACACTATATACACTCTCTCCTGTGTGT  219

seq1  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATGAAATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATGAAATA  269

seq1  TCTCCTTAGAGGGAGGACCAGACAAGCAAAGGGAGGAGGGATGGAGAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAGAGGGAGGACCAGACAAGCAAAGGGAGGAGGGATGGAGAGGA  319

seq1  CCTGGAGGACATTATCAGCAAGGCCCAGGGAGAGATGGCTCCGTGGGTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGACATTATCAGCAAGGCCCAGGGAGAGATGGCTCCGTGGGTAA  369

seq1  GAACACAGGCTGCTCTTCCAGAGGACTCAGGTTGGATTCCCAGCACCCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGCTGCTCTTCCAGAGGACTCAGGTTGGATTCCCAGCACCCAC  419

seq1  ATGGCAGCTCACAACCTTTGAAAACTCCAGTTCTAGGAGGAATCTTGCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTCACAACCTTTGAAAACTCCAGTTCTAGGAGGAATCTTGCTC  469

seq1  CCTCTTCTGACCTCCATAGGTACTGCATGCACATGGTGCATAGTCAGACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGACCTCCATAGGTACTGCATGCACATGGTGCATAGTCAGACA  519

seq1  GGCAGGCTGACCACTCACAGGCATGAAAATAAAAATAAATAAATAAATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGACCACTCACAGGCATGAAAATAAAAATAAATAAATAAATCT  569

seq1  CAAAAAAAATAAATTAAAAGAGCAAGGTACGTGCTCGGCTTGGTGGCACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAATAAATTAAAAGAGCAAGGTACGTGCTCGGCTTGGTGGCACA  619

seq1  CACCTTTAATCCCAGCACTCAGGAAGCAGAGGCAGGCCAACCTCTGTGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGCACTCAGGAAGCAGAGGCAGGCCAACCTCTGTGAG  669

seq1  TTTGAAGCTAGTCTGATCTATGAATGGAGTTCCAGGTCAGCCAGGGCTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCTAGTCTGATCTATGAATGGAGTTCCAGGTCAGCCAGGGCTAC  719

seq1  ATAGTGAGACCCTGTCTTGAAAATAAAGAGGGTGAGGTGCAATTTTATGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGACCCTGTCTTGAAAATAAAGAGGGTGAGGTGCAATTTTATGT  769

seq1  ATGTATGGAAGTGTCACGGAGAAAGACAGAGACTTGATTTGATTTGTTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGAAGTGTCACGGAGAAAGACAGAGACTTGATTTGATTTGTTGC  819

seq1  CCTCATTTCCAAATACTTCAGTGAGTGTCTTTTACCAAAAGGTCATTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCCAAATACTTCAGTGAGTGTCTTTTACCAAAAGGTCATTCTC  869

seq1  TTACATGGACATGACATATTTACCAACTTCATTGGGTCGGACATTGATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGACATGACATATTTACCAACTTCATTGGGTCGGACATTGATAA  919

seq1  AACAGACTACGATGGCATCTACCTTCAGTAATCCACCTTCTCCGGACAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTACGATGGCATCTACCTTCAGTAATCCACCTTCTCCGGACAGC  969

seq1  CAGAAACCTCTCATCTCTTATGACCTTGACATCTTAAAGAGTCAACTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTCTCATCTCTTATGACCTTGACATCTTAAAGAGTCAACTCTT  1019

seq1  TTTTTCTTTTTTTGAGACAATGTTTCTCTGTATAGCTCTGGCTATCCTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTGAGACAATGTTTCTCTGTATAGCTCTGGCTATCCTGG  1069

seq1  AATTC  1150
      |||||
seq2  AATTC  1074

seq1: chr2_164381128_164382218
seq2: B6Ng01-227P02.g_68_1157

seq1  GAATTCTAGGATACAGCCAGGTACAGGGAGATCAGTCCAGAAGATGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATACAGCCAGGTACAGGGAGATCAGTCCAGAAGATGTGAG  50

seq1  GAGACAGATGTCTGGTACCTGAGCACAGGTAACGAGCTATGTGGCAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGATGTCTGGTACCTGAGCACAGGTAACGAGCTATGTGGCAGGAT  100

seq1  GTAGGTTAAAATAAGTGGGTTCTCTTAAATTATGATTCTAGTCAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTAAAATAAGTGGGTTCTCTTAAATTATGATTCTAGTCAGAGAAG  150

seq1  AGCTTAGCTGTGTGGCCAGGATATTCGTAAGTATATTTTGAGTCTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCTGTGTGGCCAGGATATTCGTAAGTATATTTTGAGTCTGAGAC  200

seq1  CTATTTCTGGGAACATGGGGCCGGGAGACAGAACCCGGCATAACTTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGGGAACATGGGGCCGGGAGACAGAACCCGGCATAACTTCAAC  250

seq1  ACAGGAGCCCCACACTTCTCACACAGCCACAGAGGACTGAGCCATGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCCCCACACTTCTCACACAGCCACAGAGGACTGAGCCATGCAAC  300

seq1  ACCTCCTTCTGCCTGCATCTAGGCTGTATGAGTCTAACCCTAGTTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTCTGCCTGCATCTAGGCTGTATGAGTCTAACCCTAGTTCTAAC  350

seq1  CCAGGGGCTCCTCAAGATACACGTCAAGACATGGCCAGGCCCTTACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCTCCTCAAGATACACGTCAAGACATGGCCAGGCCCTTACCTTT  400

seq1  CAGATACTCTGACTAAGCTTGTGCATTCTTCTCTCCATCTTCCTGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTCTGACTAAGCTTGTGCATTCTTCTCTCCATCTTCCTGGTGAA  450

seq1  ATGGTCCTTATCACCTGAACTCTCTAAATTCCCCTACAAAGGAATCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTTATCACCTGAACTCTCTAAATTCCCCTACAAAGGAATCTCTG  500

seq1  CACCCTTGTTCTTCCTGCCCAGTTAGCTGCCCTCTTCCCTATCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTTCTTCCTGCCCAGTTAGCTGCCCTCTTCCCTATCTTTCTTT  550

seq1  GAACAGCATCTCAGAAGTATCTGAACCCACATTTCCTGACCTGCAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCATCTCAGAAGTATCTGAACCCACATTTCCTGACCTGCAATTCC  600

seq1  TAAGGCCCCAGGAAAATCTTACTCTTGCAGAGGCTGAGTCGACCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCCCAGGAAAATCTTACTCTTGCAGAGGCTGAGTCGACCAGGAAA  650

seq1  GTTATGAAAGAGGTGTGAAGATGCAGCAGGCCCTTCTCCCTTCCTGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAAGAGGTGTGAAGATGCAGCAGGCCCTTCTCCCTTCCTGATAG  700

seq1  AACTAGGGATGGGTTTCACTGCGGGCAACTAAAATATTACTGACTTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGATGGGTTTCACTGCGGGCAACTAAAATATTACTGACTTGGCT  750

seq1  TGGTTCATAGAATGGAAGGGAAGGTTAAAAGGCACCCTGCCTTGTAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATAGAATGGAAGGGAAGGTTAAAAGGCACCCTGCCTTGTAAGGG  800

seq1  TGGCAAGGCAGAAGAACTGAGGCCTTCCCAGGACACCTGTGAGGGAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGCAGAAGAACTGAGGCCTTCCCAGGACACCTGTGAGGGAGCTG  850

seq1  GGGTCTTCTGCTGTCCTTTGTTCAAGACTAATATCCCCAGAACAGCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCTGCTGTCCTTTGTTCAAGACTAATATCCCCAGAACAGCATGT  900

seq1  GATTGGCTGCGCTTTGTCTGGGTAGAGAAGGCGCTTTGCATGACCATCCT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATTGGCTGCGCTTTGTCTGGGTAGAGAA-GCGCTTTGCATGACCATCCT  949

seq1  GCCCGCTATCCTGATGTAGGAAGAACATTCCTAACCCAAATAAATCAAGG  1000
      |||||||||||||||||||  || |||||||||||||||||||||||| |
seq2  GCCCGCTATCCTGATGTAG--AG-ACATTCCTAACCCAAATAAATCAA-G  995

seq1  CGCTTCATCAGAAG-AGAGATAGAC--GCATG--GTGGGTGGTCAAACAA  1045
      |||||||||||||| ||||||||||   ||||  | |||||||| |||||
seq2  CGCTTCATCAGAAGAAGAGATAGACCGCCATGCTGGGGGTGGTC-AACAA  1044

seq1  AATAACCGATACGTCCAGAAAGAGATAGACGCATGGTGGGTGGTCA  1091
      |||||||||||||| ||||| |||||||||||||||||||||||||
seq2  AATAACCGATACGTTCAGAATGAGATAGACGCATGGTGGGTGGTCA  1090