BAC Information

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BAC

Clone NameB6Ng01-227P05
Chromosome2 (Build37)
Map Location 75,676,208 - 75,876,827
singlet/doubletdoublet
Overlap geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
Upstream geneMtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227P05.bB6Ng01-227P05.g
ACCGA041488GA041489
length1,1411,026
definitionB6Ng01-227P05.b B6Ng01-227P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,875,677 - 75,876,827)(75,676,208 - 75,677,233)
sequence
gaattcaacaaatactgctactgctatcagacagaaatatttgctcattc
atcatccagtgagtgtttattaagaacccactgtgttctgtgtattcaac
ttccacagttgcctgtatccagccggtcacaggattggaaagaagttaat
aaacaataagatgttagtgtggaacttaactcatcgctgtctttcttgtt
ctttaagagagccagatgagttagcccgtggaaacacttttaacgttagg
gcagaaagtctaaggtgtgttggtaaacaaagattttagtagttcctgac
aaattccaaagtgtctttagacaacccacatatgtatcccctctcccatg
atatagtgatgagctagaaattgagaagttccaaccctgatgcttcctgt
acgccaggcattgcgctactcatttgggatatatccgtaggtgagatgca
tgcagctcttacctttagggatccagatcggtggggaagagagaaaaatg
agcacagctgcatgtagagtgctccagccgcagtcacttcacagagtgac
tggagcaagccgcaaagcacctccttgccccgtggtcgtgatctggttga
actgttgtgtccttgtgctgtctcatcttccaacgctgtcaacattaaga
gtaattataaccctttgacatagcctgccgagtctactcatattcttaac
acagtaccaaacatgggatcgctttttcgatcttctctggcccaattcta
gtttaagctaaagagaaatttcatttaaaaattaagcatacctgagatgg
tatacatctctgactccagaaagctaaagtaagataatctcgtttgagct
cagtgtgggctacatagtgaggcccagggctcaaaaataagacaataaaa
taaacagccttttgttctttagtcataaaaattgaaattatcacctacat
tttgcttttctcgttccctttttcaaactttttctgccaaagtccagaaa
tcttttcacgatctcatttaaaagttatttatttaaaatgtatgataatg
atgattgtgatctgtgtgtgctgtgaatatgatgtggtgtgtcagagcca
gaagagaaagccctatctctagagctggagtagaaggcgtt
gaattcactgagtattctgatctcctctgtcctgagaaagagtgagcatg
agacttggggacagacctccatacttgtgttgaagtcttctagggctaga
aacaggagctgtagaatggctgaagtgtttctgaggaaatcagagaaaca
ggttaaagaagctacctagaacctgaacaacagtcttcattttttgttgc
catgtgctactgtcaccattgctgttgcagtcacaccgaacctttgacag
agcagctgatgactggagaatctgtctcaatcagtccttttaggcccgtt
tctcattctttgaaacaatggtgtactgtagttacataccatacattcta
taactggatcatcctttcttcttccttgatgtttgttttcctccagatgc
aatgcatattgtttggtgttgcacagataatgtgggaatggtatatggat
caaaaacttatttgaattgttctaaatatatacatgtatatgtgtgttca
tgtgtgtgtatgcctgtgtgtacacatacataggaggcctgatgttgata
ttggtatctttcttgtttgttctcaaccttatttatttaaaaattttaat
aatttgtgtgtgtcttgagtgggggtttgtgctcatgagtacagtgtctg
gggaggccagaagacagtatctgattccctggaactgatgttactggcgt
ttgtgaactacctgatatagatgtttggaatccaacttgagtgttccaca
agtgaagtgcagacttaacttctgagctatgtctccagcactatatttcc
tctttaaaaagatgaattgattttttttttttttttacatatgtgtggtc
tccagccctacacttcctttttataaaggccagaagagcacattgggagt
gtgggttctgggaatgaacctaaggtcctttgcaagagcactaagttgct
ttagctactgagcacatccagtccctactttattttattggagatggggg
ctcctctgaccgatcttgccaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75875677_75876827
seq2: B6Ng01-227P05.b_47_1187 (reverse)

seq1  AACGCCTCTAACTCCAGCTCTAAGAGATAAGGC-TTCTCTTCTGGCTTCT  49
      |||||||   ||||||||||| ||||||| ||| |||||||||||| |||
seq2  AACGCCTTCTACTCCAGCTCT-AGAGATAGGGCTTTCTCTTCTGGC-TCT  48

seq1  GACACA-CACATCATATTCACAGCACACACAGATCAACCAATCATCAAAT  98
      |||||| |||||||||||||||||||||||||||||  |||||||||   
seq2  GACACACCACATCATATTCACAGCACACACAGATCA--CAATCATCA---  93

seq1  TAATCAATACATTTTAAATAAAATAAACCTTTTAAAATGAAGATCGTGAA  148
      | ||| ||||||||||||| ||||||  ||||| ||||| ||||||||||
seq2  TTATC-ATACATTTTAAAT-AAATAA--CTTTT-AAATG-AGATCGTGAA  137

seq1  AAGATTTCTGGACTTTGGCAG-AAAAGTTTTGAAAAGGGAACGAGAAAAG  197
      ||||||||||||||||||||| ||||||||  ||||||||||||||||||
seq2  AAGATTTCTGGACTTTGGCAGAAAAAGTTTGAAAAAGGGAACGAGAAAAG  187

seq1  CAAAATGTAGGTGATAATTTCAATTTTTATGACTAAAGAACAAAAGGCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTAGGTGATAATTTCAATTTTTATGACTAAAGAACAAAAGGCTG  237

seq1  TTTATTTTATTGTCTTATTTTTGAGCCCTGGGCCTCACTATGTAGCCCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTGTCTTATTTTTGAGCCCTGGGCCTCACTATGTAGCCCAC  287

seq1  ACTGAGCTCAAACGAGATTATCTTACTTTAGCTTTCTGGAGTCAGAGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCAAACGAGATTATCTTACTTTAGCTTTCTGGAGTCAGAGATG  337

seq1  TATACCATCTCAGGTATGCTTAATTTTTAAATGAAATTTCTCTTTAGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATCTCAGGTATGCTTAATTTTTAAATGAAATTTCTCTTTAGCTT  387

seq1  AAACTAGAATTGGGCCAGAGAAGATCGAAAAAGCGATCCCATGTTTGGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAATTGGGCCAGAGAAGATCGAAAAAGCGATCCCATGTTTGGTA  437

seq1  CTGTGTTAAGAATATGAGTAGACTCGGCAGGCTATGTCAAAGGGTTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAAGAATATGAGTAGACTCGGCAGGCTATGTCAAAGGGTTATAA  487

seq1  TTACTCTTAATGTTGACAGCGTTGGAAGATGAGACAGCACAAGGACACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTAATGTTGACAGCGTTGGAAGATGAGACAGCACAAGGACACAA  537

seq1  CAGTTCAACCAGATCACGACCACGGGGCAAGGAGGTGCTTTGCGGCTTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAACCAGATCACGACCACGGGGCAAGGAGGTGCTTTGCGGCTTGC  587

seq1  TCCAGTCACTCTGTGAAGTGACTGCGGCTGGAGCACTCTACATGCAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCACTCTGTGAAGTGACTGCGGCTGGAGCACTCTACATGCAGCTG  637

seq1  TGCTCATTTTTCTCTCTTCCCCACCGATCTGGATCCCTAAAGGTAAGAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTTTCTCTCTTCCCCACCGATCTGGATCCCTAAAGGTAAGAGC  687

seq1  TGCATGCATCTCACCTACGGATATATCCCAAATGAGTAGCGCAATGCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATCTCACCTACGGATATATCCCAAATGAGTAGCGCAATGCCTG  737

seq1  GCGTACAGGAAGCATCAGGGTTGGAACTTCTCAATTTCTAGCTCATCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACAGGAAGCATCAGGGTTGGAACTTCTCAATTTCTAGCTCATCACT  787

seq1  ATATCATGGGAGAGGGGATACATATGTGGGTTGTCTAAAGACACTTTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGGGAGAGGGGATACATATGTGGGTTGTCTAAAGACACTTTGGA  837

seq1  ATTTGTCAGGAACTACTAAAATCTTTGTTTACCAACACACCTTAGACTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAGGAACTACTAAAATCTTTGTTTACCAACACACCTTAGACTTT  887

seq1  CTGCCCTAACGTTAAAAGTGTTTCCACGGGCTAACTCATCTGGCTCTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAACGTTAAAAGTGTTTCCACGGGCTAACTCATCTGGCTCTCTT  937

seq1  AAAGAACAAGAAAGACAGCGATGAGTTAAGTTCCACACTAACATCTTATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAGAAAGACAGCGATGAGTTAAGTTCCACACTAACATCTTATT  987

seq1  GTTTATTAACTTCTTTCCAATCCTGTGACCGGCTGGATACAGGCAACTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAACTTCTTTCCAATCCTGTGACCGGCTGGATACAGGCAACTGT  1037

seq1  GGAAGTTGAATACACAGAACACAGTGGGTTCTTAATAAACACTCACTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGAATACACAGAACACAGTGGGTTCTTAATAAACACTCACTGGA  1087

seq1  TGATGAATGAGCAAATATTTCTGTCTGATAGCAGTAGCAGTATTTGTTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGAGCAAATATTTCTGTCTGATAGCAGTAGCAGTATTTGTTGA  1137

seq1  ATTC  1151
      ||||
seq2  ATTC  1141

seq1: chr2_75676208_75677233
seq2: B6Ng01-227P05.g_65_1090

seq1  GAATTCACTGAGTATTCTGATCTCCTCTGTCCTGAGAAAGAGTGAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTATTCTGATCTCCTCTGTCCTGAGAAAGAGTGAGCATG  50

seq1  AGACTTGGGGACAGACCTCCATACTTGTGTTGAAGTCTTCTAGGGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGGACAGACCTCCATACTTGTGTTGAAGTCTTCTAGGGCTAGA  100

seq1  AACAGGAGCTGTAGAATGGCTGAAGTGTTTCTGAGGAAATCAGAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGCTGTAGAATGGCTGAAGTGTTTCTGAGGAAATCAGAGAAACA  150

seq1  GGTTAAAGAAGCTACCTAGAACCTGAACAACAGTCTTCATTTTTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGAAGCTACCTAGAACCTGAACAACAGTCTTCATTTTTTGTTGC  200

seq1  CATGTGCTACTGTCACCATTGCTGTTGCAGTCACACCGAACCTTTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTACTGTCACCATTGCTGTTGCAGTCACACCGAACCTTTGACAG  250

seq1  AGCAGCTGATGACTGGAGAATCTGTCTCAATCAGTCCTTTTAGGCCCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGATGACTGGAGAATCTGTCTCAATCAGTCCTTTTAGGCCCGTT  300

seq1  TCTCATTCTTTGAAACAATGGTGTACTGTAGTTACATACCATACATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTTTGAAACAATGGTGTACTGTAGTTACATACCATACATTCTA  350

seq1  TAACTGGATCATCCTTTCTTCTTCCTTGATGTTTGTTTTCCTCCAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATCATCCTTTCTTCTTCCTTGATGTTTGTTTTCCTCCAGATGC  400

seq1  AATGCATATTGTTTGGTGTTGCACAGATAATGTGGGAATGGTATATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTGTTTGGTGTTGCACAGATAATGTGGGAATGGTATATGGAT  450

seq1  CAAAAACTTATTTGAATTGTTCTAAATATATACATGTATATGTGTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTATTTGAATTGTTCTAAATATATACATGTATATGTGTGTTCA  500

seq1  TGTGTGTGTATGCCTGTGTGTACACATACATAGGAGGCCTGATGTTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGCCTGTGTGTACACATACATAGGAGGCCTGATGTTGATA  550

seq1  TTGGTATCTTTCTTGTTTGTTCTCAACCTTATTTATTTAAAAATTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATCTTTCTTGTTTGTTCTCAACCTTATTTATTTAAAAATTTTAAT  600

seq1  AATTTGTGTGTGTCTTGAGTGGGGGTTTGTGCTCATGAGTACAGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGTGTGTCTTGAGTGGGGGTTTGTGCTCATGAGTACAGTGTCTG  650

seq1  GGGAGGCCAGAAGACAGTATCTGATTCCCTGGAACTGATGTTACTGGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCAGAAGACAGTATCTGATTCCCTGGAACTGATGTTACTGGCGT  700

seq1  TTGTGAACTACCTGATATAGATGTTTGGAATCCAACTTGAGTGTTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTACCTGATATAGATGTTTGGAATCCAACTTGAGTGTTCCACA  750

seq1  AGTGAAGTGCAGACTTAACTTCTGAGCTATGTCTCCAGCACTATATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGCAGACTTAACTTCTGAGCTATGTCTCCAGCACTATATTTCC  800

seq1  TCTTTAAAAAGATGAATTGA--TTTTTTTTTTTTTTACATATGTGTGGTC  848
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TCTTTAAAAAGATGAATTGATTTTTTTTTTTTTTTTACATATGTGTGGTC  850

seq1  TCCAGCCCTACACTTCCTTTTTATAAAGGCCAGAAGAGCACATT-GGAGT  897
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCAGCCCTACACTTCCTTTTTATAAAGGCCAGAAGAGCACATTGGGAGT  900

seq1  GTGGGTTCTGGGAATTGAACCT-AGGTCCTTTGCAAGAGCACTAAGTGCT  946
      |||||||||||||| ||||||| ||||||||||||||||||||||||   
seq2  GTGGGTTCTGGGAA-TGAACCTAAGGTCCTTTGCAAGAGCACTAAGTTGC  949

seq1  TTTAGCTACTGAGCCACATCCCAGTCCCTACTTTA-TTTATT-GAGATGG  994
      ||||||||||||| ||||| ||||||||||||||| |||||| |||||||
seq2  TTTAGCTACTGAG-CACAT-CCAGTCCCTACTTTATTTTATTGGAGATGG  997

seq1  GGCCTCTCACTGAACCCGGATCTTGCC-AGTTC  1026
      || ||| | ||||   | ||||||||| |||||
seq2  GGGCTC-CTCTGA---CCGATCTTGCCAAGTTC  1026