BAC Information

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BAC

Clone NameB6Ng01-228A21
Chromosome2 (Build37)
Map Location 180,950,136 - 181,130,727
singlet/doubletdoublet
Overlap geneLOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
Upstream geneLama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms
Downstream geneBtbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A21.bB6Ng01-228A21.g
ACCGA041562GA041563
length1,1121,163
definitionB6Ng01-228A21.b B6Ng01-228A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,950,136 - 180,951,213)(181,129,585 - 181,130,727)
sequence
gaattccacccacttttcagggaccataaccgacagcaacgtatattctg
tgtcactgtatgttgcaagtatgtaatttgccttttggttttgattttgc
agggggttacaatgaaaagactgccttaagtcttttgagactgacatttt
aaagatttatttattttatatatatgagtacactgtagctgtcttcagac
acaccagaagagggcatcggatcccattacagatggttgtgagccacaat
gctggaaattgaattcaggacctctggaaaagcagccagtgctcttaacc
actgagccatctctccagccccgagactgacttttaaactaataaaagac
tctgaggacttctgaagctggactaaatgtattttgcattatgatatggc
cacaagcctatggtggccagggagtagaaagtggtggttcagaagagcat
gccccccataggcccacttatttgatataggcccctagttggttggatcg
tttgcaaagaattatgtttaccttgttggaggaggtatgtcacgtggggg
aagactttcaggtttcaaaagcccataccattctcagtttttctgcttcc
tacttgcagataaaagtataagctctcagctactgctccagcgccaggcc
tgctgccgtactccccactgtaatgaccatggactcatcctctgaaactg
taagtcccaatagacttttagaaaagttcctttggtcatggtattttatc
acagcaataaacagtcaccaactggactgggagataagttttcagaaggt
gcgtctgtgggccacagactgtcccttgtgtcttagtattgatcttgtac
ttcactgtttcaagaatttacatcctgggaaacctgatgaagggataccg
cttggattaataggaccatcggtcattcctttacaactgtcgtaagccaa
gcatgggtgggtatgtgccccttgatcccaatgtttggggagaccaaggg
cagaatagatctctgaattttgagactaacttggacaacagaagtttcag
ctaatgaaaggcatggcatagtgaactacctggtaaccaaacaaaacaaa
aacatagtcaaa
gaattcacaaagatccacctctctctgctctccaagtgctgggattacag
gtgtgcaccaccactgcccagcttgaatgctggtttttcttatcttcctc
tctagggtagtatctaatgcacccttgccaaacatcacgctttggcatcc
agtcggatcatgggtatagggaagctctgaacagggtaaagacagctgta
gagggtgacttgttcccatagcaagctgctgatctgttctcagcagactc
ctggaaggttgtctgttttgtgactcctaagagctgtgtagccacctccc
tgtactctgatgagtgagtagaccgtctatttggaggtgaagtgaggtgg
ttggtcatgtggggtcaggtgctaatgtctcttctactgtctttcagtga
acgaattcacggtgatcaggaagaagttcaagtgcccctactgcagcttc
tcagccatgcaccagtgcatccttaagcgacacatgcgctcacatactgg
agagcggccctacccttgtgagatctgtggcaagaagttcactaggagag
agcacatgaagcgacatactctggtgagtgcaggcgtcagtcagtgcatg
agggtatatgataaaatggtctctgatgtcctgacaggcaggtcaggagt
agggtgtagactacctaccccagtaataggtgccttgcagaagggagtat
ggaacagaacagggagagctgctacacacacccccccccccccccatccc
attgtgcctctcctcatgggctccaaagcctgtctaagtctgagtgcaga
gagtgatgggcacatcgcttgttgttttgcttgctggcttcctcagccac
ctttagagtgcacacagctacctacactctggcctgtcttatctgcattc
ccactcttgttgcctggcttcttagttcctagcaaggcttgtttttcaag
taagcaggtgttgaatcagtctggcccaaagaaatgaccagaaaagaaaa
tggtgtccagaaaacaggtagttttgctctcagcaagatacattcagcca
aagtcagcaggcaccaggtagtctaaaggccaggctatggtccaagaact
tagagctccttaaaattaattcaagtttgggggagggtcacttaaggcag
atgagttaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180950136_180951213
seq2: B6Ng01-228A21.b_43_1143

seq1  GAATTCCACCCACTTTTCAGGGACCATAACCGACAGCAACGTATATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACTTTTCAGGGACCATAACCGACAGCAACGTATATTCTG  50

seq1  TGTCACTGTATGTTGCAAGTATGTAATTTGCCTTTTGGTTTTGATTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTATGTTGCAAGTATGTAATTTGCCTTTTGGTTTTGATTTTGC  100

seq1  AGGGGGTTACAATGAAAAGACTGCCTTAAGTCTTTTGAGACTGACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTACAATGAAAAGACTGCCTTAAGTCTTTTGAGACTGACATTTT  150

seq1  AAAGATTTATTTATTTTATATATATGAGTACACTGTAGCTGTCTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTTATATATATGAGTACACTGTAGCTGTCTTCAGAC  200

seq1  ACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACAAT  250

seq1  GCTGGAAATTGAATTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAATTGAATTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACC  300

seq1  ACTGAGCCATCTCTCCAGCCCCGAGACTGACTTTTAAACTAATAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCTCCAGCCCCGAGACTGACTTTTAAACTAATAAAAGAC  350

seq1  TCTGAGGACTTCTGAAGCTGGACTAAATGTATTTTGCATTATGATATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACTTCTGAAGCTGGACTAAATGTATTTTGCATTATGATATGGC  400

seq1  CACAAGCCTATGGTGGCCAGGGAGTAGAAAGTGGTGGTTCAGAAGAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCTATGGTGGCCAGGGAGTAGAAAGTGGTGGTTCAGAAGAGCAT  450

seq1  GCCCCCCATAGGCCCACTTATTTGATATAGGCCCCTAGTTGGTTGGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCATAGGCCCACTTATTTGATATAGGCCCCTAGTTGGTTGGATCG  500

seq1  TTTGCAAAGAATTATGTTTACCTTGTTGGAGGAGGTATGTCACGTGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGAATTATGTTTACCTTGTTGGAGGAGGTATGTCACGTGGGGG  550

seq1  AAGACTTTCAGGTTTCAAAAGCCCATACCATTCTCAGTTTTTCTGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCAGGTTTCAAAAGCCCATACCATTCTCAGTTTTTCTGCTTCC  600

seq1  TACTTGCAGATAAAAGTATAAGCTCTCAGCTACTGCTCCAGCGCCAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCAGATAAAAGTATAAGCTCTCAGCTACTGCTCCAGCGCCAGGCC  650

seq1  TGCTGCCGTACTCCCCACTGTAATGACCATGGACTCATCCTCTGAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCGTACTCCCCACTGTAATGACCATGGACTCATCCTCTGAAACTG  700

seq1  TAAGTCCCAATAGACTTTTAGAAAAGTTCCTTTGGTCATGGTATTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCAATAGACTTTTAGAAAAGTTCCTTTGGTCATGGTATTTTATC  750

seq1  ACAGCAATAAACAGTCACCAACTGGACTGGGAGATAAG-TTTCAGAAGGT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAGCAATAAACAGTCACCAACTGGACTGGGAGATAAGTTTTCAGAAGGT  800

seq1  GCGTCTGT-GGCCACAGACTGTCCC-TGTGTCTTAGTA-TGATCTTGTAC  846
      |||||||| |||||||||||||||| |||||||||||| |||||||||||
seq2  GCGTCTGTGGGCCACAGACTGTCCCTTGTGTCTTAGTATTGATCTTGTAC  850

seq1  TTCACTGTTTCAAGAATTTACAT-CTGGGAAAACTGATGAA-GGATA-CG  893
      ||||||||||||||||||||||| |||||||| |||||||| ||||| ||
seq2  TTCACTGTTTCAAGAATTTACATCCTGGGAAACCTGATGAAGGGATACCG  900

seq1  C-TGGA-TAATAGGACCATCGTTCATTCC-TTACAACTGTCGTAAGCCAA  940
      | |||| |||||||||||||| ||||||| ||||||||||||||||||||
seq2  CTTGGATTAATAGGACCATCGGTCATTCCTTTACAACTGTCGTAAGCCAA  950

seq1  GCATGG--TGGTATGTG-CCCTTGATCCCAGTGTTT-GGGAGACCAA-GG  985
      ||||||   |||||||| |||||||||||| ||||| |||||||||| ||
seq2  GCATGGGTGGGTATGTGCCCCTTGATCCCAATGTTTGGGGAGACCAAGGG  1000

seq1  CAG-ATAGATCTCTGAA-TTTGAGACCAACCTGGACAACAG-AGTTTCAG  1032
      ||| ||||||||||||| |||||||| ||| |||||||||| ||||||| 
seq2  CAGAATAGATCTCTGAATTTTGAGACTAACTTGGACAACAGAAGTTTCA-  1049

seq1  GCTAGTG-AAGGC--TGCATAGTGA--CACCCTGTAA-CAAACAAAACAA  1076
      |||| || |||||   |||||||||   |||  |||| ||||||||||||
seq2  GCTAATGAAAGGCATGGCATAGTGAACTACCTGGTAACCAAACAAAACAA  1099

seq1  AA  1078
      ||
seq2  AA  1101

seq1: chr2_181129585_181130727
seq2: B6Ng01-228A21.g_68_1230 (reverse)

seq1  CCCCCTAACTCCATCTTCCTCTAAGTGTGCCCCTCCCCAAACCCTG-ATT  49
      |||||||||| ||||| ||| |||  ||| |||||||| || | || |||
seq2  CCCCCTAACT-CATCTGCCT-TAA--GTGACCCTCCCCCAAACTTGAATT  46

seq1  AATTTTTAGGAGCTCTAAGTCCTT-GACCCTAGCTTGCCC--TAAGCTAC  96
      |||||| ||||||||||||| ||| |||| |||| || ||  ||  ||||
seq2  AATTTTAAGGAGCTCTAAGTTCTTGGACCATAGCCTGGCCTTTAGACTAC  96

seq1  CT-GTGCCTGCCTGACTTT-GCTG-ATGTATCTTGC-CTGAACCAACCTA  142
      || ||||||| |||||||| |||| |||||||||||   || | || |||
seq2  CTGGTGCCTG-CTGACTTTGGCTGAATGTATCTTGCTGAGAGCAAAACTA  145

seq1  CCTG-TTTCTGGACACCTTTTTC-TTTCT-GTCATTTCTT--GGCCAGAC  187
      |||| |||||||||||| ||||| ||||| ||||||||||  ||||||||
seq2  CCTGTTTTCTGGACACCATTTTCTTTTCTGGTCATTTCTTTGGGCCAGAC  195

seq1  TGATTCAACACCTGC-TACTTGAAAA--CAGCC-TGCTAGGAACTAAG-A  232
      ||||||||||||||| ||||||||||   |||| |||||||||||||| |
seq2  TGATTCAACACCTGCTTACTTGAAAAACAAGCCTTGCTAGGAACTAAGAA  245

seq1  GCCAGGC-ACAAGAGTGGGAATGCAGATAAGACAGGCCAGAGTGTAGGTA  281
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAACAAGAGTGGGAATGCAGATAAGACAGGCCAGAGTGTAGGTA  295

seq1  GCTGTGTGCACTCT-AAGGTGGCTGAGGAAGCCAGCAAGC-AAACAACAA  329
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GCTGTGTGCACTCTAAAGGTGGCTGAGGAAGCCAGCAAGCAAAACAACAA  345

seq1  GCGATGTG-CCATCACTCTCTGCACTCAGACTTAGACAGGC-TTGGAGCC  377
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GCGATGTGCCCATCACTCTCTGCACTCAGACTTAGACAGGCTTTGGAGCC  395

seq1  CCTGAGGAGAGGCACAATGGGAT--GGGGGGGGGGGGGTGTGTGTAGCAG  425
      | |||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CATGAGGAGAGGCACAATGGGATGGGGGGGGGGGGGGGTGTGTGTAGCAG  445

seq1  CTCTCCCTGTTCTGTTCCATACTCCCTTCTGCAAGGCACCTATTACTGGG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGTTCTGTTCCATACTCCCTTCTGCAAGGCACCTATTACTGGG  495

seq1  GTAGGTAGTCTACACCCTACTCCTGACCTGCCTGTCAGGACATCAGAGAC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGTCTACACCCTACTCCTGACCTGCCTGTCAGGACATCAGAGAC  545

seq1  CATTTTATCATATACCCTCATGCACTGACTGACGCCTGCACTCACCAGAG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATCATATACCCTCATGCACTGACTGACGCCTGCACTCACCAGAG  595

seq1  TATGTCGCTTCATGTGCTCTCTCCTAGTGAACTTCTTGCCACAGATCTCA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGCTTCATGTGCTCTCTCCTAGTGAACTTCTTGCCACAGATCTCA  645

seq1  CAAGGGTAGGGCCGCTCTCCAGTATGTGAGCGCATGTGTCGCTTAAGGAT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTAGGGCCGCTCTCCAGTATGTGAGCGCATGTGTCGCTTAAGGAT  695

seq1  GCACTGGTGCATGGCTGAGAAGCTGCAGTAGGGGCACTTGAACTTCTTCC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTGCATGGCTGAGAAGCTGCAGTAGGGGCACTTGAACTTCTTCC  745

seq1  TGATCACCGTGAATTCGTTCACTGAAAGACAGTAGAAGAGACATTAGCAC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCGTGAATTCGTTCACTGAAAGACAGTAGAAGAGACATTAGCAC  795

seq1  CTGACCCCACATGACCAACCACCTCACTTCACCTCCAAATAGACGGTCTA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCACATGACCAACCACCTCACTTCACCTCCAAATAGACGGTCTA  845

seq1  CTCACTCATCAGAGTACAGGGAGGTGGCTACACAGCTCTTAGGAGTCACA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATCAGAGTACAGGGAGGTGGCTACACAGCTCTTAGGAGTCACA  895

seq1  AAACAGACAACCTTCCAGGAGTCTGCTGAGAACAGATCAGCAGCTTGCTA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACAACCTTCCAGGAGTCTGCTGAGAACAGATCAGCAGCTTGCTA  945

seq1  TGGGAACAAGTCACCCTCTACAGCTGTCTTTACCCTGTTCAGAGCTTCCC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACAAGTCACCCTCTACAGCTGTCTTTACCCTGTTCAGAGCTTCCC  995

seq1  TATACCCATGATCCGACTGGATGCCAAAGCGTGATGTTTGGCAAGGGTGC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCATGATCCGACTGGATGCCAAAGCGTGATGTTTGGCAAGGGTGC  1045

seq1  ATTAGATACTACCCTAGAGAGGAAGATAAGAAAAACCAGCATTCAAGCTG  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATACTACCCTAGAGAGGAAGATAAGAAAAACCAGCATTCAAGCTG  1095

seq1  GGCAGTGGTGGTGCACACCTGTAATCCCAGCACTTGGAGAGCAGAGAGAG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGTGGTGCACACCTGTAATCCCAGCACTTGGAGAGCAGAGAGAG  1145

seq1  GTGGATCTTTGTGAATTC  1143
      ||||||||||||||||||
seq2  GTGGATCTTTGTGAATTC  1163