BAC Information

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BAC

Clone NameB6Ng01-228D03
Chromosome2 (Build37)
Map Location 166,169,000 - 166,383,724
singlet/doubletdoublet
Overlap genePpia-ps2_2197.1
Upstream geneGm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775
Downstream geneBC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D03.bB6Ng01-228D03.g
ACCGA041665GA041666
length955363
definitionB6Ng01-228D03.b B6Ng01-228D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,382,780 - 166,383,724)(166,169,000 - 166,169,368)
sequence
gaattccagaatgagtagctaagtcattaagggcgacgatttcacacaca
ggagagcttgcagatttcacgcacacgagtgctttcaactcatcccggag
agctggctgctggtccgggtcagcggattctcagatccacagatcttcgc
aggccccagtgggattattccccatttccagccactttgctccagtagca
atgccagagacagaaagagaaattgaggcctcctcccataactgctgtaa
gcaagccaggacacctctcagagcctccactgctgtcttcctctgtcccc
tcctcccgctgctccgtcctccgctgccccttcctcccactgatgtcttc
cactgccccttcttccctctgatgtcctcctcccactgctgtcttcctct
tccccttcctcccattgctgtcctccactgccccatcctccactgcccct
tcctcccactgctgtcctccactgacctatcttccactgttgtctttctc
cttctgctgtcctcctctccccctcctcccattgctgtcctccactgccc
catcctccactgccccttcctcccactgctgtcctcctcccactgctgtc
ttcctcttccccttcctcccactgctgtcctccactgccccgtcctccac
tgcccccttcctcccactgatggcctacactgacctatctccccactgtt
gtccttctccaactgctgtcctcctctgctccctcctccccactgctgtc
ctccactgcctcctcctccatagacacgtggggtgcctttccccatggct
tgcagagaaaagtagaattgcgattttcagctcttgcagatgagtttaga
aatatgtgtatggtgtgtctgtgtgtgtgtcttttgtgcgtgcatgtgtg
tgtgtgtgtgtgtgtgttgaatgcgtgtgtgcattgactatgtggaagcc
tcaga
ctctccctggccacttgcttaggtttgggagacaaggaggctgttcatat
ccgtgctgcttaaataccaacatacgaaggtgagagttggaactaggcaa
gtgtgttggtatgtgcctgtaatcccatcactcaggaggctgaggcagga
ggattgtgaatctgggttacatagtaagatcccatctcataaattaaaaa
gagcaaaagagggaaaaaatatccaaaattattgaaaacagctgttccag
gagggagccagaaaaggcttttctaacaatcttatagaacatagttgttt
agtctgtgcgactctcctgtttatacagaacagaaagaagggggggttgg
gggctgggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_166382780_166383724
seq2: B6Ng01-228D03.b_44_998 (reverse)

seq1  TCTGAG--CTCCACATAGTACATGCACACACGCATTC-ACACACACACAC  47
      ||||||   ||||||||||  |||||||||||||||| ||||||||||||
seq2  TCTGAGGCTTCCACATAGTCAATGCACACACGCATTCAACACACACACAC  50

seq1  ACACACACACATGCACGCAC-AAAGACACACACACAGACACACCATACAC  96
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACACACACATGCACGCACAAAAGACACACACACAGACACACCATACAC  100

seq1  ATATTTCT-AACTCATCTGCAAGAGCTGAAAATCGCAATTCTAC-TTTCT  144
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATATTTCTAAACTCATCTGCAAGAGCTGAAAATCGCAATTCTACTTTTCT  150

seq1  CTGCAAGCCATGGGGAAAGGCA-CCCACGTGTCTATGGAGGAGGAGGCAG  193
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGCAAGCCATGGGGAAAGGCACCCCACGTGTCTATGGAGGAGGAGGCAG  200

seq1  TGGAGGACAGCAGT-GGGAGGAGGGAGCAGAGGAGGACAGCAGTTGGAGA  242
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGAGGACAGCAGTGGGGAGGAGGGAGCAGAGGAGGACAGCAGTTGGAGA  250

seq1  AGGACAACAGT-GGGAGATAGGTCAGTGTAGGCCATCAGTGGGAGGAA-G  290
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  AGGACAACAGTGGGGAGATAGGTCAGTGTAGGCCATCAGTGGGAGGAAGG  300

seq1  GGGCAGTGGAGGACGGGGCAGTGGAGGACAGCAGTGGGAGGAAGGGGAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGAGGACGGGGCAGTGGAGGACAGCAGTGGGAGGAAGGGGAAG  350

seq1  AGGAAGACAGCAGTGGGAGGAGGACAGCAGTGGGAGGAAGGGGCAGTGGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAGCAGTGGGAGGAGGACAGCAGTGGGAGGAAGGGGCAGTGGA  400

seq1  GGATGGGGCAGTGGAGGACAGCAATGGGAGGAGGGGGAGAGGAGGACAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCAGTGGAGGACAGCAATGGGAGGAGGGGGAGAGGAGGACAGC  450

seq1  AGAAGGAGAAAGACAACAGTGGAAGATAGGTCAGTGGAGGACAGCAGTGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAAGACAACAGTGGAAGATAGGTCAGTGGAGGACAGCAGTGG  500

seq1  GAGGAAGGGGCAGTGGAGGATGGGGCAGTGGAGGACAGCAATGGGAGGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGGCAGTGGAGGATGGGGCAGTGGAGGACAGCAATGGGAGGAA  550

seq1  GGGGAAGAGGAAGACAGCAGTGGGAGGAGGACATCAGAGGGAAGAAGGGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGGAAGACAGCAGTGGGAGGAGGACATCAGAGGGAAGAAGGGG  600

seq1  CAGTGGAAGACATCAGTGGGAGGAAGGGGCAGCGGAGGACGGAGCAGCGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGACATCAGTGGGAGGAAGGGGCAGCGGAGGACGGAGCAGCGG  650

seq1  GAGGAGGGGACAGAGGAAGACAGCAGTGGAGGCTCTGAGAGGTGTCCTGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGACAGAGGAAGACAGCAGTGGAGGCTCTGAGAGGTGTCCTGG  700

seq1  CTTGCTTACAGCAGTTATGGGAGGAGGCCTCAATTTCTCTTTCTGTCTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTACAGCAGTTATGGGAGGAGGCCTCAATTTCTCTTTCTGTCTCT  750

seq1  GGCATTGCTACTGGAGCAAAGTGGCTGGAAATGGGGAATAATCCCACTGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGCTACTGGAGCAAAGTGGCTGGAAATGGGGAATAATCCCACTGG  800

seq1  GGCCTGCGAAGATCTGTGGATCTGAGAATCCGCTGACCCGGACCAGCAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCGAAGATCTGTGGATCTGAGAATCCGCTGACCCGGACCAGCAGC  850

seq1  CAGCTCTCCGGGATGAGTTGAAAGCACTCGTGTGCGTGAAATCTGCAAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCGGGATGAGTTGAAAGCACTCGTGTGCGTGAAATCTGCAAGC  900

seq1  TCTCCTGTGTGTGAAATCGTCGCCCTTAATGACTTAGCTACTCATTCTGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGTGTGAAATCGTCGCCCTTAATGACTTAGCTACTCATTCTGG  950

seq1  AATTC  945
      |||||
seq2  AATTC  955

seq1: chr2_166169000_166169368
seq2: B6Ng01-228D03.g_71_439

seq1  GAATTCCTCTCCCTGGCCACTTGCTTAGGTTTGGGAGACAAGGAGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCCCTGGCCACTTGCTTAGGTTTGGGAGACAAGGAGGCTGT  50

seq1  TCATATCCGTGCTGCTTAAATACCAACATACGAAGGTGAGAGTTGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCGTGCTGCTTAAATACCAACATACGAAGGTGAGAGTTGGAACT  100

seq1  AGGCAAGTGTGTTGGTATGTGCCTGTAATCCCATCACTCAGGAGGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGTGTTGGTATGTGCCTGTAATCCCATCACTCAGGAGGCTGAG  150

seq1  GCAGGAGGATTGTGAATCTGGGTTACATAGTAAGATCCCATCTCATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGATTGTGAATCTGGGTTACATAGTAAGATCCCATCTCATAAAT  200

seq1  TAAAAAGAGCAAAAGAGGGAAAAAATATCCAAAATTATTGAAAACAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGCAAAAGAGGGAAAAAATATCCAAAATTATTGAAAACAGCTG  250

seq1  TTCCAGGAGGGAGCCAGAAAAGGCTTTTCTAACAATCTTATAGAACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGGGAGCCAGAAAAGGCTTTTCTAACAATCTTATAGAACATAG  300

seq1  TTGTTTAGTCTGTGCGACTCTCCTGTTTATACAGAACAGAAAGAAGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTCTGTGCGACTCTCCTGTTTATACAGAACAGAAAGAAGGGGG  350

seq1  GGTTGGGGGCTGGGGGTTG  369
      |||||||||||||||||||
seq2  GGTTGGGGGCTGGGGGTTG  369