BAC Information

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BAC

Clone NameB6Ng01-228D13
Chromosome2 (Build37)
Map Location 21,122,021 - 21,270,959
singlet/doubletdoublet
Overlap gene4933434I06Rik, Thnsl1
Upstream geneLOC667609, Etl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik
Downstream geneGpr158, LOC637235, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D13.bB6Ng01-228D13.g
ACCGA041685GA041686
length1,0881,131
definitionB6Ng01-228D13.b B6Ng01-228D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,269,870 - 21,270,959)(21,122,021 - 21,123,132)
sequence
gaattcaggggctgttgtaacataacaacattacaagcaggaaacaataa
caacagcaaaatgaatcgtccaaagtaatatagctatctggcttcaatat
caggctttttatcatgagaccagtggttctcaattgacagtaagtgcagg
ctcacctgaaatgcttttaaaaacacacttcccagatagctggtttggtg
ggcctggagtagagcctgagagccggtacttcaagtacttctaagttatt
ctggtactgctggtccaaggccctcattttgggagtcactgttgtgcacc
acacttatcaccactataaactctatgtttgtgttctttctctccactcc
aacaaacatgctttataaacaacttaaaggaggaaggctctattttggct
tatgatttcagaaaggtcagtctttcacaataggggagacatggtgtaat
agatcagttcttgttgcagtaggtaagaaacagagatgggcatacagaag
agagtcagggcatgaagcccctgccatgatatagccactttctataatca
ggcctcatccccagccttttaccctcctctcaaaaatcacatattacaaa
gcacttataccatccaataggccacactcctaatgatctactgtcccctg
gaaacaccctcagagaagcctactagtgtgcttaacagaccccgtaagca
tttcttattgtggtcaagttaatagagaaaaatcactattaggtgtatac
acagtgttctgtccattttcacatagaaagagccaggagtcaatgttaac
gggatataaagaggctggaaatctaagcgggggggatgggggcatctcgt
ttgtctagtttcaattttaggaagcttactgtggatgcttatgattttca
cagtttattctcactgctccagcttgccctttccatctctgccttcagtc
aacttcctcctaccacctcttcccatgttgtctcctctgcttttcactct
gagggcagactcaagaattctcgttcatcattgggagagaggctcctagt
cttgcaactttatatgccccagtacattggtacatcag
gaattcaggtcccttcccttcatttttttcaatcagttttcctgtataaa
ctcagtacgtgtttgtttatatgcattgcaatgccaattggtgctgtctt
ctttcttttttattcttttcatccttttagtgtacgtcatcaatatactt
aactgcttatatccataattaagtatttctttcattttgggggttttata
actacatcatctcacccttttccccttcctaaccatcacatatacccctc
ttgctcttttgcaaattcatggcctcttttgcattacttgtgacataaat
tatgtgtgcatgtatatgtgcagctgtatttcttaaatataataaaatgt
tatgccttttcatgtcagtatatagaaaacttgttcttttaaatagctac
attccattgcattttggaaattgtgcagcttcattataaagacggggcag
gtaatatattttttaaaagatttatttatttattttacgtataggagcac
actcttgctgttttcagacacatcagaaaagggcattggatctcattaca
tatggttgtgagccaccatgtggttgctgggaattgaactcaggaccttt
aacaaatgacaagccattgctcttaaccgctgagccatttctctacccct
gtggcaggtaattttattaactggacctgttttttacttactttaaactg
ggctagagataacttttatttttgaaactaaaattgtcatcttcaattaa
catactataattattttattgccaatgagcatagcatcatagtccatttt
tataacatattaaaaggatacacattgcttaaattgtgctgaaaaatttg
aaagggacttttaaattttccttgtaattgaatgagagatctggagaagc
cacagtatgcgttgtgtgtgtgtgtgtgtgtgtgtgtactggtgtatcat
tatttaatcatttagattaatatttgcctcttgaagcttgagctgtctag
aaagtcctacaattatgtcttgaagatttacatttagttaaatacctgca
tatagcttccactctcacagacattggaattgacttttcttcaggtttac
attccatatgtgaatttattatagggtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21269870_21270959
seq2: B6Ng01-228D13.b_46_1133 (reverse)

seq1  CTGATGTTCCCATGTACTGGGGCATATAAAGTTTGCAAGACCTAGGGGCC  50
      ||||||| || |||||||||||||||||||| |||||||| ||||| |||
seq2  CTGATGTACCAATGTACTGGGGCATATAAAG-TTGCAAGA-CTAGGAGCC  48

seq1  TCTCTTCCCAATGATGGACGAGAA-TCCTGAGTCTTGCCCTTCAGAGTGA  99
      |||| ||||||||||| ||||||| || |||||| ||||| |||||||||
seq2  TCTC-TCCCAATGATGAACGAGAATTCTTGAGTC-TGCCC-TCAGAGTGA  95

seq1  AAAGCAGAGGAGACAACATGGGAAGAGGTGGTAGGAGGAAGTTGACTGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGGAGACAACATGGGAAGAGGTGGTAGGAGGAAGTTGACTGAA  145

seq1  GGCAGAGATGG-AAGGGCAAGCTGGAGGCAGTGAGAATAAACTGTGAAAA  198
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GGCAGAGATGGAAAGGGCAAGCTGGA-GCAGTGAGAATAAACTGTGAAAA  194

seq1  TCATAAGCATCCACAGTAAGCTTCCT-AAATTGAAACTAGACAAACGAGA  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATAAGCATCCACAGTAAGCTTCCTAAAATTGAAACTAGACAAACGAGA  244

seq1  TGCCCCCAT-CCCCCCGCTTAGATTTCCAGCCTCTTTATATCCCGTTAAC  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCATCCCCCCCGCTTAGATTTCCAGCCTCTTTATATCCCGTTAAC  294

seq1  ATTGACTCCTGGCTCTTTCTATGTGAAAATGGACAGAACACTGTGTATAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCCTGGCTCTTTCTATGTGAAAATGGACAGAACACTGTGTATAC  344

seq1  ACCTAATAGTGATTTTTCTCTATTAACTTGACCACAATAAGAAATGCTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATAGTGATTTTTCTCTATTAACTTGACCACAATAAGAAATGCTTA  394

seq1  CGGGGTCTGTTAAGCACACTAGTAGGCTTCTCTGAGGGTGTTTCCAGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCTGTTAAGCACACTAGTAGGCTTCTCTGAGGGTGTTTCCAGGGG  444

seq1  ACAGTAGATCATTAGGAGTGTGGCCTATTGGATGGTATAAGTGCTTTGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGATCATTAGGAGTGTGGCCTATTGGATGGTATAAGTGCTTTGTA  494

seq1  ATATGTGATTTTTGAGAGGAGGGTAAAAGGCTGGGGATGAGGCCTGATTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATTTTTGAGAGGAGGGTAAAAGGCTGGGGATGAGGCCTGATTA  544

seq1  TAGAAAGTGGCTATATCATGGCAGGGGCTTCATGCCCTGACTCTCTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGGCTATATCATGGCAGGGGCTTCATGCCCTGACTCTCTTCTG  594

seq1  TATGCCCATCTCTGTTTCTTACCTACTGCAACAAGAACTGATCTATTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATCTCTGTTTCTTACCTACTGCAACAAGAACTGATCTATTACA  644

seq1  CCATGTCTCCCCTATTGTGAAAGACTGACCTTTCTGAAATCATAAGCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCCCCTATTGTGAAAGACTGACCTTTCTGAAATCATAAGCCAA  694

seq1  AATAGAGCCTTCCTCCTTTAAGTTGTTTATAAAGCATGTTTGTTGGAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCCTTCCTCCTTTAAGTTGTTTATAAAGCATGTTTGTTGGAGTG  744

seq1  GAGAGAAAGAACACAAACATAGAGTTTATAGTGGTGATAAGTGTGGTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAACACAAACATAGAGTTTATAGTGGTGATAAGTGTGGTGCA  794

seq1  CAACAGTGACTCCCAAAATGAGGGCCTTGGACCAGCAGTACCAGAATAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGACTCCCAAAATGAGGGCCTTGGACCAGCAGTACCAGAATAAC  844

seq1  TTAGAAGTACTTGAAGTACCGGCTCTCAGGCTCTACTCCAGGCCCACCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTACTTGAAGTACCGGCTCTCAGGCTCTACTCCAGGCCCACCAA  894

seq1  ACCAGCTATCTGGGAAGTGTGTTTTTAAAAGCATTTCAGGTGAGCCTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTATCTGGGAAGTGTGTTTTTAAAAGCATTTCAGGTGAGCCTGCA  944

seq1  CTTACTGTCAATTGAGAACCACTGGTCTCATGATAAAAAGCCTGATATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTCAATTGAGAACCACTGGTCTCATGATAAAAAGCCTGATATTG  994

seq1  AAGCCAGATAGCTATATTACTTTGGACGATTCATTTTGCTGTTGTTATTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGATAGCTATATTACTTTGGACGATTCATTTTGCTGTTGTTATTG  1044

seq1  TTTCCTGCTTGTAATGTTGTTATGTTACAACAGCCCCTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTTGTAATGTTGTTATGTTACAACAGCCCCTGAATTC  1088

seq1: chr2_21122021_21123132
seq2: B6Ng01-228D13.g_69_1199

seq1  GAATTCAGGTCCCTTCCCTTCATTTTTTTCAATCAGTTTTCCTGTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCCTTCCCTTCATTTTTTTCAATCAGTTTTCCTGTATAAA  50

seq1  CTCAGTACGTGTTTGTTTATATGCATTGCAATGCCAATTGGTGCTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACGTGTTTGTTTATATGCATTGCAATGCCAATTGGTGCTGTCTT  100

seq1  CTTTCTTTTTTATTCTTTTCATCCTTTTAGTGTACGTCATCAATATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTATTCTTTTCATCCTTTTAGTGTACGTCATCAATATACTT  150

seq1  AACTGCTTATATCCATAATTAAGTATTTCTTTCATTTTGGGGGTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTATATCCATAATTAAGTATTTCTTTCATTTTGGGGGTTTTATA  200

seq1  ACTACATCATCTCACCCTTTTCCCCTTCCTAACCATCACATATACCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCATCTCACCCTTTTCCCCTTCCTAACCATCACATATACCCCTC  250

seq1  TTGCTCTTTTGCAAATTCATGGCCTCTTTTGCATTACTTGTGACATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTTGCAAATTCATGGCCTCTTTTGCATTACTTGTGACATAAAT  300

seq1  TATGTGTGCATGTATATGTGCAGCTGTATTTCTTAAATATAATAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCATGTATATGTGCAGCTGTATTTCTTAAATATAATAAAATGT  350

seq1  TATGCCTTTTCATGTCAGTATATAGAAAACTTGTTCTTTTAAATAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTTTCATGTCAGTATATAGAAAACTTGTTCTTTTAAATAGCTAC  400

seq1  ATTCCATTGCATTTTGGAAATTGTGCAGCTTCATTATAAAGACGGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTGCATTTTGGAAATTGTGCAGCTTCATTATAAAGACGGGGCAG  450

seq1  GTAATATATTTTTTAAAAGATTTATTTATTTATTTTACGTATAGGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATTTTTTAAAAGATTTATTTATTTATTTTACGTATAGGAGCAC  500

seq1  ACTCTTGCTGTTTTCAGACACATCAGAAAAGGGCATTGGATCTCATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCTGTTTTCAGACACATCAGAAAAGGGCATTGGATCTCATTACA  550

seq1  TATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTT  600

seq1  AACAAATGACAAGCCATTGCTCTTAACCGCTGAGCCATTTCTCTACCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGACAAGCCATTGCTCTTAACCGCTGAGCCATTTCTCTACCCCT  650

seq1  GTGGCAGGTAATTTTATTAACTGGACCTGTTTTTTACTTACTTTAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGTAATTTTATTAACTGGACCTGTTTTTTACTTACTTTAAACTG  700

seq1  GGCTAGAGATAACTTTTA-TTTTGAAACTAAAATTGTCATCTTCAATTAA  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCTAGAGATAACTTTTATTTTTGAAACTAAAATTGTCATCTTCAATTAA  750

seq1  CATACTATAATTATTTTATTGCCAATGAGCATAGCATCATAGTCCA-TTT  798
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATACTATAATTATTTTATTGCCAATGAGCATAGCATCATAGTCCATTTT  800

seq1  TATAACATATTAAAAGGATACACATTGCTTAAA-TGTGCTG-AAAATTTG  846
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TATAACATATTAAAAGGATACACATTGCTTAAATTGTGCTGAAAAATTTG  850

seq1  AAA-GGAC-TTTAAATTTTCCTTGTAA-TGAATGAGAGATCT-GAGAAGC  892
      ||| |||| |||||||||||||||||| |||||||||||||| |||||||
seq2  AAAGGGACTTTTAAATTTTCCTTGTAATTGAATGAGAGATCTGGAGAAGC  900

seq1  CACAGTATGCG-TGTGTGTGTGTGTGTGTGTGTGTGTACTTGTGTGTACT  941
      ||||||||||| |||||||||||||||||||||||||||| ||||    |
seq2  CACAGTATGCGTTGTGTGTGTGTGTGTGTGTGTGTGTACTGGTGT---AT  947

seq1  CATTAATTTAATCAATTTTAGATTAATA-TTGCCTCTTG-AGCTTGAGCT  989
      |||| |||||||||  |||||||||||| |||||||||| ||||||||||
seq2  CATT-ATTTAATCA--TTTAGATTAATATTTGCCTCTTGAAGCTTGAGCT  994

seq1  GTCTTAGAAAGTCCTCCAAATTATGTCTTGAGAATTTTACATTTAGTTAA  1039
      ||| ||||||||||| | ||||||||||||| |  |||||||||||||||
seq2  GTC-TAGAAAGTCCTAC-AATTATGTCTTGA-AGATTTACATTTAGTTAA  1041

seq1  ATA-CTGCATA-AGTT----CACTCACAGACATTGGAA-TGA-TTTTTTT  1081
      ||| ||||||| || |    | |||||||||||||||| ||| |||| ||
seq2  ATACCTGCATATAGCTTCCACTCTCACAGACATTGGAATTGACTTTTCTT  1091

seq1  CAG---TTCATCCTAT---TGA--TTA-TATAGGGTAATT  1112
      |||   | ||| | ||   |||  ||| ||||||||||||
seq2  CAGGTTTACATTCCATATGTGAATTTATTATAGGGTAATT  1131