BAC Information

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BAC

Clone NameB6Ng01-228I21
Chromosome2 (Build37)
Map Location 96,589,496 - 96,715,652
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I21.bB6Ng01-228I21.g
ACCGA041938GA041939
length1,1931,143
definitionB6Ng01-228I21.b B6Ng01-228I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,589,496 - 96,590,690)(96,714,516 - 96,715,652)
sequence
gaattccctaggaatggaggtagagtgacaggataagatcccacatgcaa
gctaccagaggaagaagagtatggctaatgaaacaggaatgaaagtctat
aggtttattagaaaaaaaatctccattttgattgttcaaatgtcaagatt
gtttctggtgactgaataccatccatttttctgaagtcttttcttctcat
ctgacatctgagtacgtggattccacattttattactataactatgtact
agttaatgtaagtgaacttatgcctctttaagtcaattatttcattttcg
cttgatatagaatgagaaaaactgaagaaagggtattataatttagtaaa
ataagtattaataagtgcaggggaatcagatctagtgaatagtatgatga
aaaatatgatatagacacttaaaatgtattaagagatcatgtttttaaat
ctgcttataccatccctattctacacacacacacacaaacacacagagaa
gcatagtatggccccatgactacattaatttgactatagggataatctct
caatgcatgtgtcaatggagctgtcatattatataacacaaatatgcaaa
tgttttctttgtcattggaaattttaaaatgtatatgcaattttaatgaa
aatttatgcagttctattagaatcagtcactcataagccatgttgttttt
cctctttatccctttaccctttagtagtatttagcatattcttagttgat
tatttatatggccagttcttgaattgtacttacttgtactctcagagtta
ctttttaaaacatatatctgcatcttcttactggaagatgcataggaacc
catatactatataaacatatcctttagtgacagttatggttataacatca
cttttattgacaatgaataaaatttcttaatacttaatcttttaattttc
attttaagaaatatatttacttttattttgtgtgtagggatgttttttcc
tacatgtgtattcagagtaccatatgaatgctacgcctggggaagtcaga
agaaggagtcaattcctctggacctaggagttacagatcatttagagtca
tcatgcagtgctgagaagtggaggtggggctgcagtgctctaactgcttt
caggccctcggttaacgttagtagtaaggaaagttactatttt

gaattctggtatttcacttactttgtccaaacacctgagcatttggtagt
agtgttggatgtagtgttctcagtggttctgtgctgcagcattggatgtt
ccatctgaccttgattttgaggcagaggtgatgcttcaccaagaggcttg
taagaattatttgcatatgttgagctagaactgtctccttgagttcatgt
ttcatttatgcaaggaaagacatagtaaatgaaagttgttgcactaccac
atgtgctgtgagtctcaagccgttcagcacagtgaatattgacatttagt
gccatggctgtggataacccatgagacacacctttagaagtgtagcatca
atgatgacactatcactttagttcctctcaatactatttttgtatactgc
cttggaaaattgtatcctctgcgcttatgctctgtgagtctactgtcatg
atcactggaaaatcaccttccaactgaaaaggtattttgacaaattcaaa
aaacctcaaccattggaaaatttgaatttgcaatttgacagaagataaga
atctcgtaagtaactgtaaaaccttttcacttgctgggacctcaatctgc
caatgcaattatgcaacctatttcattttcttttctttatttctgttatc
ttctattttgacaggatccacttttgtactacactgtccaactctgccag
tccagttatttagctatacacataaccaggtcaccatgttcagaatattt
ttcaaagtatgttgtaacacttacccataacacagaatcagttaatttat
ggaaagtgggtggctgactctgactgacagcagaaaaatgaatttgaaag
aacaatcctttcataaatattacttgagcattaatgtgtgactagtcctg
tgagataaaggggagaaattgttaagtatgcctcttgggagctcacggta
caataaaggggctcatatatagttgatgcaaaaaaagaagtaaataaacc
tcatgagtagggttgaagtttaaatagcagcacacacaaacttctgcttc
aaggaagaaagtaatatggtagttgttatcacaggagattcagataataa
ctgcgtagaatttctcaaatttggaatgaggaggaaaccgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96589496_96590690
seq2: B6Ng01-228I21.b_45_1237

seq1  GAATTCCCTAGGAATGGAGGTAGAGTGACAGGATAAGATCCCACATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGGAATGGAGGTAGAGTGACAGGATAAGATCCCACATGCAA  50

seq1  GCTACCAGAGGAAGAAGAGTATGGCTAATGAAACAGGAATGAAAGTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGAGGAAGAAGAGTATGGCTAATGAAACAGGAATGAAAGTCTAT  100

seq1  AGGTTTATTAGAAAAAAAATCTCCATTTTGATTGTTCAAATGTCAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTAGAAAAAAAATCTCCATTTTGATTGTTCAAATGTCAAGATT  150

seq1  GTTTCTGGTGACTGAATACCATCCATTTTTCTGAAGTCTTTTCTTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTGACTGAATACCATCCATTTTTCTGAAGTCTTTTCTTCTCAT  200

seq1  CTGACATCTGAGTACGTGGATTCCACATTTTATTACTATAACTATGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCTGAGTACGTGGATTCCACATTTTATTACTATAACTATGTACT  250

seq1  AGTTAATGTAAGTGAACTTATGCCTCTTTAAGTCAATTATTTCATTTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGTAAGTGAACTTATGCCTCTTTAAGTCAATTATTTCATTTTCG  300

seq1  CTTGATATAGAATGAGAAAAACTGAAGAAAGGGTATTATAATTTAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAGAATGAGAAAAACTGAAGAAAGGGTATTATAATTTAGTAAA  350

seq1  ATAAGTATTAATAAGTGCAGGGGAATCAGATCTAGTGAATAGTATGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATTAATAAGTGCAGGGGAATCAGATCTAGTGAATAGTATGATGA  400

seq1  AAAATATGATATAGACACTTAAAATGTATTAAGAGATCATGTTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATATAGACACTTAAAATGTATTAAGAGATCATGTTTTTAAAT  450

seq1  CTGCTTATACCATCCCTATTCTACACACACACACACAAACACACAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATACCATCCCTATTCTACACACACACACACAAACACACAGAGAA  500

seq1  GCATAGTATGGCCCCATGACTACATTAATTTGACTATAGGGATAATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTATGGCCCCATGACTACATTAATTTGACTATAGGGATAATCTCT  550

seq1  CAATGCATGTGTCAATGGAGCTGTCATATTATATAACACAAATATGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATGTGTCAATGGAGCTGTCATATTATATAACACAAATATGCAAA  600

seq1  TGTTTTCTTTGTCATTGGAAATTTTAAAATGTATATGCAATTTTAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTGTCATTGGAAATTTTAAAATGTATATGCAATTTTAATGAA  650

seq1  AATTTATGCAGTTCTATTAGAATCAGTCACTCATAAGCCATGTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCAGTTCTATTAGAATCAGTCACTCATAAGCCATGTTGTTTTT  700

seq1  CCTCTTTATCCCTTTACCCTTTAGTAGTATTTAGCATATTCTTAGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATCCCTTTACCCTTTAGTAGTATTTAGCATATTCTTAGTTGAT  750

seq1  TATTTATATGGCCAGTTCTTGAATTGTACTTACTTGTACTCTCAGAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATGGCCAGTTCTTGAATTGTACTTACTTGTACTCTCAGAGTTA  800

seq1  CTTTTTAAAACATATATCTGCATCTTCTTACTGGAAGATGCATAGGAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAACATATATCTGCATCTTCTTACTGGAAGATGCATAGGAACC  850

seq1  CATATACTATATAAACATATCCTTTAGTGACAGTTATGGTTATAACATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTATATAAACATATCCTTTAGTGACAGTTATGGTTATAACATCA  900

seq1  CTTTTATTGACAATGAATAAAATTTCTTAATACTTAATCTTTTAATTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGACAATGAATAAAATTTCTTAATACTTAATCTTTTAATTTTC  950

seq1  AATTTTAAGAAATATATTTACTTTTATTTTGTGTGTAGGGATG-TTTTTC  999
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -ATTTTAAGAAATATATTTACTTTTATTTTGTGTGTAGGGATGTTTTTTC  999

seq1  CTACATGTGTA-TCAGAGTACCATATGAATGCTACGCCTGGGGAAGTCAG  1048
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGTATTCAGAGTACCATATGAATGCTACGCCTGGGGAAGTCAG  1049

seq1  AAGAAGGAGTCAAATCCTCTGGAACTAGGAGTTACAGATCATTAAGAGTC  1098
      ||||||||||||| ||||||||| ||||||||||||||||||| ||||||
seq2  AAGAAGGAGTCAATTCCTCTGGACCTAGGAGTTACAGATCATTTAGAGTC  1099

seq1  ATCATGCAGGTGCTGAG-AGT-GAGGTGGGCCTGCAGTGCTCTAAACTGC  1146
      |||||||| |||||||| ||| |||||||| |||||||||||| ||||||
seq2  ATCATGCA-GTGCTGAGAAGTGGAGGTGGGGCTGCAGTGCTCT-AACTGC  1147

seq1  TTTCCAGCCCTCGTTTTACAGTTTAGTAGTAAAGAAAATTTACTATTTT  1195
      ||||  ||||||| || ||   |||||||| ||| ||| ||||||||||
seq2  TTTCAGGCCCTCGGTTAAC--GTTAGTAGT-AAGGAAAGTTACTATTTT  1193


seq1: chr2_96714516_96715652
seq2: B6Ng01-228I21.g_66_1208 (reverse)

seq1  CCCCCGTTTCCTCCTCAATCCAATTTTGGGGAATTCTACGCAG-TATTAT  49
      |||| |||||||||||| ||||| |||| | |||||||||||| ||||||
seq2  CCCCGGTTTCCTCCTCATTCCAAATTTGAGAAATTCTACGCAGTTATTAT  50

seq1  CTGAATCTCCCTGTGATTAACAACTTACATATTTACTTTCT--CTTTGAG  97
      |||||||| ||||||| ||||||||  |||| |||||||||  |||  ||
seq2  CTGAATCT-CCTGTGA-TAACAACTACCATA-TTACTTTCTTCCTTGAAG  97

seq1  CAG-AGTTTGTGTGTGCTGCTATTT-AACTTCAACCCTACTCATG-GGTT  144
      ||| ||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CAGAAGTTTGTGTGTGCTGCTATTTAAACTTCAACCCTACTCATGAGGTT  147

seq1  TATTTACTTCTTTTTTTGCATCACTTATATATGAGCCCCTTTA-TGTACC  193
      |||||||||||||||||||||||  |||||||||||||||||| ||||||
seq2  TATTTACTTCTTTTTTTGCATCAACTATATATGAGCCCCTTTATTGTACC  197

seq1  GTGAGCTCCCAAG-GGCATACTTAACAATTTCTCCCCTTTATCTCACAGG  242
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCCCAAGAGGCATACTTAACAATTTCTCCCCTTTATCTCACAGG  247

seq1  ACTAGTCACACATTAATGCTCAAGTAATATTTATG-AAGGATTGTTCTTT  291
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTAGTCACACATTAATGCTCAAGTAATATTTATGAAAGGATTGTTCTTT  297

seq1  CAAATTCATTTTTCTGCTGTCAGTCAGAGTCAGCCACCCACTTTCCATAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCATTTTTCTGCTGTCAGTCAGAGTCAGCCACCCACTTTCCATAA  347

seq1  ATTAACTGATTCTGTGTTATGGGTAAGTGTTACAACATACTTTGAAAAAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGATTCTGTGTTATGGGTAAGTGTTACAACATACTTTGAAAAAT  397

seq1  ATTCTGAACATGGTGACCTGGTTATGTGTATAGCTAAATAACTGGACTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACATGGTGACCTGGTTATGTGTATAGCTAAATAACTGGACTGG  447

seq1  CAGAGTTGGACAGTGTAGTACAAAAGTGGATCCTGTCAAAATAGAAGATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGACAGTGTAGTACAAAAGTGGATCCTGTCAAAATAGAAGATA  497

seq1  ACAGAAATAAAGAAAAGAAAATGAAATAGGTTGCATAATTGCATTGGCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAAAGAAAAGAAAATGAAATAGGTTGCATAATTGCATTGGCAG  547

seq1  ATTGAGGTCCCAGCAAGTGAAAAGGTTTTACAGTTACTTACGAGATTCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGTCCCAGCAAGTGAAAAGGTTTTACAGTTACTTACGAGATTCTT  597

seq1  ATCTTCTGTCAAATTGCAAATTCAAATTTTCCAATGGTTGAGGTTTTTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTCAAATTGCAAATTCAAATTTTCCAATGGTTGAGGTTTTTTG  647

seq1  AATTTGTCAAAATACCTTTTCAGTTGGAAGGTGATTTTCCAGTGATCATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCAAAATACCTTTTCAGTTGGAAGGTGATTTTCCAGTGATCATG  697

seq1  ACAGTAGACTCACAGAGCATAAGCGCAGAGGATACAATTTTCCAAGGCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGACTCACAGAGCATAAGCGCAGAGGATACAATTTTCCAAGGCAG  747

seq1  TATACAAAAATAGTATTGAGAGGAACTAAAGTGATAGTGTCATCATTGAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAAATAGTATTGAGAGGAACTAAAGTGATAGTGTCATCATTGAT  797

seq1  GCTACACTTCTAAAGGTGTGTCTCATGGGTTATCCACAGCCATGGCACTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTTCTAAAGGTGTGTCTCATGGGTTATCCACAGCCATGGCACTA  847

seq1  AATGTCAATATTCACTGTGCTGAACGGCTTGAGACTCACAGCACATGTGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATATTCACTGTGCTGAACGGCTTGAGACTCACAGCACATGTGG  897

seq1  TAGTGCAACAACTTTCATTTACTATGTCTTTCCTTGCATAAATGAAACAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAACAACTTTCATTTACTATGTCTTTCCTTGCATAAATGAAACAT  947

seq1  GAACTCAAGGAGACAGTTCTAGCTCAACATATGCAAATAATTCTTACAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGGAGACAGTTCTAGCTCAACATATGCAAATAATTCTTACAAG  997

seq1  CCTCTTGGTGAAGCATCACCTCTGCCTCAAAATCAAGGTCAGATGGAACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGTGAAGCATCACCTCTGCCTCAAAATCAAGGTCAGATGGAACA  1047

seq1  TCCAATGCTGCAGCACAGAACCACTGAGAACACTACATCCAACACTACTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTGCAGCACAGAACCACTGAGAACACTACATCCAACACTACTA  1097

seq1  CCAAATGCTCAGGTGTTTGGACAAAGTAAGTGAAATACCAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTCAGGTGTTTGGACAAAGTAAGTGAAATACCAGAATTC  1143


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