BAC Information

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BAC

Clone NameB6Ng01-229C19
Chromosome2 (Build37)
Map Location 9,197,307 - 9,350,837
singlet/doubletdoublet
Overlap geneLOC100040710
Upstream genenone
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229C19.bB6Ng01-229C19.g
ACCGA042396GA042397
length1,115453
definitionB6Ng01-229C19.b B6Ng01-229C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,349,711 - 9,350,837)(9,197,307 - 9,197,765)
sequence
gaattctcagcaagttttatgcttaggaacacaaagctcataatctgagg
gacacaaattctattttggaacctaaggttatgaaaagaagcagtacatt
ttactttttccttaggagcctaagaaataaatgttcctgtttatctacct
cttcaggactcataggtgattgttcggcagtttgtacgcatgaactacgt
ttcccccacaaggacgggggtattttcccataagggtgggccagaccctt
tttggcagcggagaagattggaaggagctagatatggtcagtaagcacta
gggggattcaagcaggtctctggctcttctcactctcatacaatttccta
tttgaaatcctacttacagaaagagcctgtggaccttaaaaacagtaaaa
acactgcagaatgtccttctaacaaactggtttccaagcaatcactgcct
agttgtcttattgcttttaactacaaccttaggtggagaggcaagaaatg
ccagaaccaaagattctttggcaatttgcatgacaacaattttgtaactt
tagaattttctactgctgttgctgctactactattgctactatgattaca
aataggactctatctatctatctatctatctatctatctatctatctatc
tatctacctatctacctatctacctaactatacatccatccatttattat
ctgtctagtatctatcaatccattcatccactatcctatctgtctagtat
ctatctacctatctatctatctatctatctatctatctatctatctatct
atctatctatcttcacctgttttacattctggaaaattagtttttgtcac
tcttccagggatcaacaatcatttgcttctctttgtcaggaaggaaaaca
cctgggcacacattgactctgataatggagaaatacattcaaagttcaac
gtttgctagaccacgttcattttcgaggagtgtgtctgcattgtgttttc
actgtctatgcatctacatctcagaaaggtggaacatgactcaagaacac
tggtgatgtactgggcgccagtgcagaatgtgagtcctcacttgggctat
gccgactgctaggtg

caggtcagccttctctacacagtgagttccagggcagccagagaaatcgt
gtctaaaaaaaaaaaaaaaaaaaaaaaatgagttccatttaaaaacagga
acaaaaaacaaaaaacaaaaaccctgctgataatcatagcttgggaggag
gggtgtcactgttaaattaaggtaaaacaagatgttcttacctcaaaaag
ttacacacctcagcacctcagaatggcagaaagcagggggcttcctacat
gaaggccagctacaaatttgaagagtgacaccttccacacagctcaataa
cagaggaacttatctggaagagttgtgtgaccaggacttaactctaaagg
atttggccacatttttttttttgattcatagaaagcccaccacattaaat
ttttattgaattttatttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9349711_9350837
seq2: B6Ng01-229C19.b_45_1159 (reverse)

seq1  CACCTTAGCAGTCGGCATAGCCAAAGTGAGACCTCCAACATCTGGCACTT  50
      |||| ||||||||||||||||| |||||||  |||  ||||   |||| |
seq2  CACC-TAGCAGTCGGCATAGCCCAAGTGAGGACTC--ACATTCTGCAC-T  46

seq1  GGCGCCCAGTACATCA-CAGTGTTCTTGGAAGTCCTGGTCCACCTTTCTG  99
      |||||||||||||||| |||||||||||  |||| || ||||||||||||
seq2  GGCGCCCAGTACATCACCAGTGTTCTTG--AGTCATGTTCCACCTTTCTG  94

seq1  AGATGTAGATGCATTAGGACAAGTGAAAACACAATGCAGAACACACCTCC  149
      ||||||||||||||   ||| |||||||||||||||||| ||||| ||||
seq2  AGATGTAGATGCAT--AGAC-AGTGAAAACACAATGCAG-ACACA-CTCC  139

seq1  TCGAAAAATGAACGTGGTCTAGCAAACGTTGAACTTTGAATGTTATTTCT  199
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCG-AAAATGAACGTGGTCTAGCAAACGTTGAACTTTGAATG-TATTTCT  187

seq1  CCATTATCAGAGTCAATGTGTGCCCAGGTGTTTTCCTTCCTGACAAAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCAGAGTCAATGTGTGCCCAGGTGTTTTCCTTCCTGACAAAGAG  237

seq1  AAGCAAATGATTGTTGATCCCTGGAAGAGTGACAAAAACTAATTTTCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGATTGTTGATCCCTGGAAGAGTGACAAAAACTAATTTTCCAG  287

seq1  AATGTAAAACAGGTGAAGATAGATAGATAGATAGATAGATAGATAGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAACAGGTGAAGATAGATAGATAGATAGATAGATAGATAGATAG  337

seq1  ATAGATAGATAGATAGATAGGTAGATAGATACTAGACAGATAGGATAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGGTAGATAGATACTAGACAGATAGGATAGTG  387

seq1  GATGAATGGATTGATAGATACTAGACAGATAATAAATGGATGGATGTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGGATTGATAGATACTAGACAGATAATAAATGGATGGATGTATA  437

seq1  GTTAGGTAGATAGGTAGATAGGTAGATAGATAGATAGATAGATAGATAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTAGATAGGTAGATAGGTAGATAGATAGATAGATAGATAGATAGA  487

seq1  TAGATAGATAGATAGATAGAGTCCTATTTGTAATCATAGTAGCAATAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGAGTCCTATTTGTAATCATAGTAGCAATAGTA  537

seq1  GTAGCAGCAACAGCAGTAGAAAATTCTAAAGTTACAAAATTGTTGTCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCAACAGCAGTAGAAAATTCTAAAGTTACAAAATTGTTGTCATG  587

seq1  CAAATTGCCAAAGAATCTTTGGTTCTGGCATTTCTTGCCTCTCCACCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCCAAAGAATCTTTGGTTCTGGCATTTCTTGCCTCTCCACCTAA  637

seq1  GGTTGTAGTTAAAAGCAATAAGACAACTAGGCAGTGATTGCTTGGAAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAGTTAAAAGCAATAAGACAACTAGGCAGTGATTGCTTGGAAACC  687

seq1  AGTTTGTTAGAAGGACATTCTGCAGTGTTTTTACTGTTTTTAAGGTCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTAGAAGGACATTCTGCAGTGTTTTTACTGTTTTTAAGGTCCAC  737

seq1  AGGCTCTTTCTGTAAGTAGGATTTCAAATAGGAAATTGTATGAGAGTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTCTGTAAGTAGGATTTCAAATAGGAAATTGTATGAGAGTGAG  787

seq1  AAGAGCCAGAGACCTGCTTGAATCCCCCTAGTGCTTACTGACCATATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGAGACCTGCTTGAATCCCCCTAGTGCTTACTGACCATATCTA  837

seq1  GCTCCTTCCAATCTTCTCCGCTGCCAAAAAGGGTCTGGCCCACCCTTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCCAATCTTCTCCGCTGCCAAAAAGGGTCTGGCCCACCCTTATG  887

seq1  GGAAAATACCCCCGTCCTTGTGGGGGAAACGTAGTTCATGCGTACAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACCCCCGTCCTTGTGGGGGAAACGTAGTTCATGCGTACAAACT  937

seq1  GCCGAACAATCACCTATGAGTCCTGAAGAGGTAGATAAACAGGAACATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAACAATCACCTATGAGTCCTGAAGAGGTAGATAAACAGGAACATTT  987

seq1  ATTTCTTAGGCTCCTAAGGAAAAAGTAAAATGTACTGCTTCTTTTCATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGGCTCCTAAGGAAAAAGTAAAATGTACTGCTTCTTTTCATAA  1037

seq1  CCTTAGGTTCCAAAATAGAATTTGTGTCCCTCAGATTATGAGCTTTGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTTCCAAAATAGAATTTGTGTCCCTCAGATTATGAGCTTTGTGT  1087

seq1  TCCTAAGCATAAAACTTGCTGAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  TCCTAAGCATAAAACTTGCTGAGAATTC  1115


seq1: chr2_9197307_9197765
seq2: B6Ng01-229C19.g_64_522

seq1  GAATTCCAGGTCAGCCTTCTCTACACAGTGAGTTCCAGGGCAGCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCTTCTCTACACAGTGAGTTCCAGGGCAGCCAGAGA  50

seq1  AATCGTGTCTAAAAAAAAAAAAAAAAAAAAAAAATGAGTTCCATTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGTCTAAAAAAAAAAAAAAAAAAAAAAAATGAGTTCCATTTAAAA  100

seq1  ACAGGAACAAAAAACAAAAAACAAAAACCCTGCTGATAATCATAGCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAAAAAACAAAAAACAAAAACCCTGCTGATAATCATAGCTTGG  150

seq1  GAGGAGGGGTGTCACTGTTAAATTAAGGTAAAACAAGATGTTCTTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGTGTCACTGTTAAATTAAGGTAAAACAAGATGTTCTTACCTC  200

seq1  AAAAAGTTACACACCTCAGCACCTCAGAATGGCAGAAAGCAGGGGGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTACACACCTCAGCACCTCAGAATGGCAGAAAGCAGGGGGCTTC  250

seq1  CTACATGAAGGCCAGCTACAAATTTGAAGAGTGACACCTTCCACACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAAGGCCAGCTACAAATTTGAAGAGTGACACCTTCCACACAGCT  300

seq1  CAATAACAGAGGAACTTATCTGGAAGAGTTGTGTGACCAGGACTTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAGAGGAACTTATCTGGAAGAGTTGTGTGACCAGGACTTAACTC  350

seq1  TAAAGGATTTGGCCACATTTTTTTTTTTGATTCATAGAAAGCCCACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATTTGGCCACATTTTTTTTTTTGATTCATAGAAAGCCCACCACA  400

seq1  TTAAATTTTTATTGAATTTTATTTATTTGTGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTATTGAATTTTATTTATTTGTGTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGTG  459
      |||||||||
seq2  GTGTGTGTG  459


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