BAC Information

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BAC

Clone NameB6Ng01-229F01
Chromosome2 (Build37)
Map Location 20,623,896 - 20,806,926
singlet/doubletdoublet
Overlap geneEtl4, Arhgap21
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneLOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229F01.bB6Ng01-229F01.g
ACCGA042499GA042500
length9401,108
definitionB6Ng01-229F01.b B6Ng01-229F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,623,896 - 20,624,829)(20,805,822 - 20,806,926)
sequence
gaattccattgtcatagcttgctttatgctcttgttcttaaagagttgcc
tcaatttttttgtaagtttaaaagtttgtcaatgggtgataaaggctggc
acatacctttaatatctgcacttgggaggcagaggcaggcagatcagtgt
gagtttgaggtcagcctggcctacagagtgaatctttgacaaccaggact
ttataaagaaactctgtctcagaaagaaaaaagtttgtacaactttccta
ccaagataattaacttttataaatttgtctcctttccattttgttttatg
ctctatcatctatcacttaacaaaatataatttcttgctcaatgttagac
attcaataaatgctctatactgttagacatttattgaaacatcagtgtcc
cacgtagtagattgatttattgagttcatttatcaaatcaatcccctgtg
gttagacggtccccctcacccatattgaactgataacttgagctccctgg
taagaacatctctgtgcctaaatgtgcagagttggaattattaattgaaa
ctgcatatttttggatttttgaatatatatttacaaagagcctttccagc
agaagtatgagaatatctttccaatttttcactgtactgctgactttatt
gtaaatacctttgccaatttcatagatgttaaaaatggtctttctgtttt
cattttaataatttttcatgaatttgcaacacatttttccctttagaaat
tactacaacagctcttcatctattcaagctatttggccttttgccactgg
tgatgcatatcatgatttgtgcttttgcataatcttaacgtggatttgga
ggacctgggggatcgtaaattcaattgaaattgttgtttcacctgcccat
ggagcatgccctctaggacttaatgtattgtcatttccag

gaattctctggcttgtctttctcacttcccaccccctaccacagtttgtt
ttaaaagttttggtgtctggtaggcactgtaggattactacttttctgtt
tttattatgtttagcttcagtgtgaggatacaagcttttaaactactgtg
agataaaactaaagaacaagagcaaagaagccaaagaatgaatataaagt
gttctagagagaaaactgtctaccagttaaccatccaatagttaaccatc
caacagttggactaaagaaaaccatccaacagttaacagtccaacagttg
aacttcatgtttgacagtgttctattttaggaaaatgtcactgttgtctg
tatccatcagaatgacctacacatattttgaggttaagagtacttaaata
atcatttcttaagcatattgatggcagtgatcatataattccaggtaaat
tcttcatactggatgacttaatatcatcatataagaatatagattaacag
cattatataagaacataattgctttattttgcttaaagggtattttgttc
catttaattggtgcccactgataatctaaaggttccctggaggatactta
aagcattcatatggcggaccatgattactcattgaaagatttggtgccta
gtagccaagcacagagagaaagtgccatacagtggcagacgtcagcatgt
tagagttaccaatctcacctcagaatgtaaaataatgtttttatatccag
tgctcattcactgccaaaaaattgcacattctgttcctatctaaatcacc
tgctcttgtagactttttggataatttgttccccaaatttgatatagaat
ttctgtctagaatttttagttatatctaaagactataaaaaatttaaagt
gttttataatttatgtgtttaataattaaagtgtttgaaatttgaataaa
caagttaccctttaaattgccatagaatggcttttgtagaatgtaaaact
ggttggggctagaaatggtctcatggggagcatgtttgtctcttcaattt
cagtgaatcttggtcaggtaaggaggcaagcggtagctctcttccgactt
ccctgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20623896_20624829
seq2: B6Ng01-229F01.b_48_987

seq1  GAATTCCATTGTCATAGCTTGCTTTATGCTCTTGTTCTTAAAGAGTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTCATAGCTTGCTTTATGCTCTTGTTCTTAAAGAGTTGCC  50

seq1  TCAATTTTTTTGTAAGTTTAAAAGTTTGTCAATGGGTGATAAAGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTTTGTAAGTTTAAAAGTTTGTCAATGGGTGATAAAGGCTGGC  100

seq1  ACATACCTTTAATATCTGCACTTGGGAGGCAGAGGCAGGCAGATCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTTTAATATCTGCACTTGGGAGGCAGAGGCAGGCAGATCAGTGT  150

seq1  GAGTTTGAGGTCAGCCTGGCCTACAGAGTGAATCTTTGACAACCAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGGTCAGCCTGGCCTACAGAGTGAATCTTTGACAACCAGGACT  200

seq1  TTATAAAGAAACTCTGTCTCAGAAAGAAAAAAGTTTGTACAACTTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAAACTCTGTCTCAGAAAGAAAAAAGTTTGTACAACTTTCCTA  250

seq1  CCAAGATAATTAACTTTTATAAATTTGTCTCCTTTCCATTTTGTTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAATTAACTTTTATAAATTTGTCTCCTTTCCATTTTGTTTTATG  300

seq1  CTCTATCATCTATCACTTAACAAAATATAATTTCTTGCTCAATGTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATCTATCACTTAACAAAATATAATTTCTTGCTCAATGTTAGAC  350

seq1  ATTCAATAAATGCTCTATACTGTTAGACATTTATTGAAACATCAGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAAATGCTCTATACTGTTAGACATTTATTGAAACATCAGTGTCC  400

seq1  CACGTAGTAGATTGATTTATTGAGTTCATTTATCAAATCAATCCCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGTAGATTGATTTATTGAGTTCATTTATCAAATCAATCCCCTGTG  450

seq1  GTTAGACGGTCCCCCTCACCCATATTGAACTGATAACTTGAGCTCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACGGTCCCCCTCACCCATATTGAACTGATAACTTGAGCTCCCTGG  500

seq1  TAAGAACATCTCTGTGCCTAAATGTGCAGAGTTGGAATTATTAATTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATCTCTGTGCCTAAATGTGCAGAGTTGGAATTATTAATTGAAA  550

seq1  CTGCATATTTTTGGATTTTTGAATATATATTTACAAAGAGCCTTTCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATTTTTGGATTTTTGAATATATATTTACAAAGAGCCTTTCCAGC  600

seq1  AGAAGTATGAGAATATCTTTCCAATTTTTCACTGTACTGCTGACTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATGAGAATATCTTTCCAATTTTTCACTGTACTGCTGACTTTATT  650

seq1  GTAAATACCTTTGCCAATTTCATAGATGTTAAAAATGGTCTTTCTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACCTTTGCCAATTTCATAGATGTTAAAAATGGTCTTTCTGTTTT  700

seq1  CATTTTAATAA-TTTTCATGAATTTGCAAACACATTTTTCCCTTTAGAAA  749
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  CATTTTAATAATTTTTCATGAATTTGC-AACACATTTTTCCCTTTAGAAA  749

seq1  TTACTACAACAGCTCTTCATCTATTCAAGCTA-TTGGCCTTTTGCCACTG  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTACTACAACAGCTCTTCATCTATTCAAGCTATTTGGCCTTTTGCCACTG  799

seq1  GTGATGCATATCATGATTTGTGC-TTTGCATAATCTTAACGTGGATTTGG  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGATGCATATCATGATTTGTGCTTTTGCATAATCTTAACGTGGATTTGG  849

seq1  AGGACCT-GGGGATCGTAAA-TCAATTGGAATTGTTGTATCACCTGCCCA  895
      ||||||| |||||||||||| ||||||| ||||||||| |||||||||||
seq2  AGGACCTGGGGGATCGTAAATTCAATTGAAATTGTTGTTTCACCTGCCCA  899

seq1  TGGAGCATGCCCTCTAGGAC-TAATGTATTGTCA-TTCCAG  934
      |||||||||||||||||||| ||||||||||||| ||||||
seq2  TGGAGCATGCCCTCTAGGACTTAATGTATTGTCATTTCCAG  940


seq1: chr2_20805822_20806926
seq2: B6Ng01-229F01.g_69_1176 (reverse)

seq1  TGTCAGGGAAGCTG---GAGAGCTACGGCATGCCT-CTTA-CTGCACAGG  45
      |||||||||||  |   ||||||||| || ||||| |||| |||  || |
seq2  TGTCAGGGAAGTCGGAAGAGAGCTACCGCTTGCCTCCTTACCTGACCAAG  50

seq1  AATACACTGGATGTGAAGAGAACAAACATGCTCCCCATGAAGACCATTTC  95
       || ||||| |  ||||||| |||||||||||||||||| ||||||||||
seq2  -ATTCACTGAAATTGAAGAG-ACAAACATGCTCCCCATG-AGACCATTTC  97

seq1  TAGCCCC-ACCAGTTTTAACATTCTACAAAAGCCATTCTATGGCAATTTA  144
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGCCCCAACCAGTTTT-ACATTCTACAAAAGCCATTCTATGGCAATTTA  146

seq1  AA-GGTAACTTGTTTATTCAAATTTCAAACACTTTAAATTATTAAACACA  193
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGGTAACTTGTTTATTCAAATTTCAAACACTTT-AATTATTAAACACA  195

seq1  TAAATTATAAAACACTTTAAA-TTTTTATAGTCTTTAGATATAACTAAAA  242
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAATTATAAAACACTTTAAATTTTTTATAGTCTTTAGATATAACTAAAA  245

seq1  ATTCTAGACAGAAATTCTATATCAAATTTGGGGAACAAATTATCCAAAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGACAGAAATTCTATATCAAATTTGGGGAACAAATTATCCAAAAA  295

seq1  GTCTACAAGAGCAGGTGATTTAGATAGGAACAGAATGTGCAATTTTTTGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAGAGCAGGTGATTTAGATAGGAACAGAATGTGCAATTTTTTGG  345

seq1  CAGTGAATGAGCACTGGATATAAAAACATTATTTTACATTCTGAGGTGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGAGCACTGGATATAAAAACATTATTTTACATTCTGAGGTGAG  395

seq1  ATTGGTAACTCTAACATGCTGACGTCTGCCACTGTATGGCACTTTCTCTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAACTCTAACATGCTGACGTCTGCCACTGTATGGCACTTTCTCTC  445

seq1  TGTGCTTGGCTACTAGGCACCAAATCTTTCAATGAGTAATCATGGTCCGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGCTACTAGGCACCAAATCTTTCAATGAGTAATCATGGTCCGC  495

seq1  CATATGAATGCTTTAAGTATCCTCCAGGGAACCTTTAGATTATCAGTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAATGCTTTAAGTATCCTCCAGGGAACCTTTAGATTATCAGTGGG  545

seq1  CACCAATTAAATGGAACAAAATACCCTTTAAGCAAAATAAAGCAATTATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTAAATGGAACAAAATACCCTTTAAGCAAAATAAAGCAATTATG  595

seq1  TTCTTATATAATGCTGTTAATCTATATTCTTATATGATGATATTAAGTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATAATGCTGTTAATCTATATTCTTATATGATGATATTAAGTCA  645

seq1  TCCAGTATGAAGAATTTACCTGGAATTATATGATCACTGCCATCAATATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATGAAGAATTTACCTGGAATTATATGATCACTGCCATCAATATG  695

seq1  CTTAAGAAATGATTATTTAAGTACTCTTAACCTCAAAATATGTGTAGGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAATGATTATTTAAGTACTCTTAACCTCAAAATATGTGTAGGTC  745

seq1  ATTCTGATGGATACAGACAACAGTGACATTTTCCTAAAATAGAACACTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATGGATACAGACAACAGTGACATTTTCCTAAAATAGAACACTGT  795

seq1  CAAACATGAAGTTCAACTGTTGGACTGTTAACTGTTGGATGGTTTTCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAAGTTCAACTGTTGGACTGTTAACTGTTGGATGGTTTTCTTT  845

seq1  AGTCCAACTGTTGGATGGTTAACTATTGGATGGTTAACTGGTAGACAGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAACTGTTGGATGGTTAACTATTGGATGGTTAACTGGTAGACAGTT  895

seq1  TTCTCTCTAGAACACTTTATATTCATTCTTTGGCTTCTTTGCTCTTGTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTAGAACACTTTATATTCATTCTTTGGCTTCTTTGCTCTTGTTC  945

seq1  TTTAGTTTTATCTCACAGTAGTTTAAAAGCTTGTATCCTCACACTGAAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTATCTCACAGTAGTTTAAAAGCTTGTATCCTCACACTGAAGC  995

seq1  TAAACATAATAAAAACAGAAAAGTAGTAATCCTACAGTGCCTACCAGACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAATAAAAACAGAAAAGTAGTAATCCTACAGTGCCTACCAGACA  1045

seq1  CCAAAACTTTTAAAACAAACTGTGGTAGGGGGTGGGAAGTGAGAAAGACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTTTTAAAACAAACTGTGGTAGGGGGTGGGAAGTGAGAAAGACA  1095

seq1  AGCCAGAGAATTC  1105
      |||||||||||||
seq2  AGCCAGAGAATTC  1108


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