BAC Information

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BAC

Clone NameB6Ng01-229H08
Chromosome2 (Build37)
Map Location 80,585,427 - 80,679,238
singlet/doubletdoublet
Overlap geneLOC103324
Upstream genePpp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
Downstream geneLOC668027, LOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H08.bB6Ng01-229H08.g
ACCGA042598GA042599
length512782
definitionB6Ng01-229H08.b B6Ng01-229H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,678,724 - 80,679,238)(80,585,427 - 80,586,200)
sequence
tttaatgtaagaactggtaaccatgtgagtaattcaagggagatgtagac
agttgtttatgtcatcttaagctggagaagtccttcccagcatggtgtat
atgaaggaatctaaaaaggagaccatcatgagattatagacatatattta
ttcatggctgcagttactgttattaagaaaactctgtgacacttggtaaa
gtgccacttcacaagtagtcagtgtaaaacaaaacaaaagtaataaaact
catgacaatatatgtgactctcaacagatcggtatctctaatttagaaaa
tatttttttttttggacttctgcggcttttatttttgcatgtaaaccact
ggggggagggggatcttgatggtgggcaccctagagattacactggagtt
ccgagggctccagacactagctgggaagtcaggtgacagaaacaatgatt
cagaccaatcacatgattgctaaaactgggtctcccagcagggattctgg
gtggtcaggtgt
gaattctcagctctgaatgtgacatctatagcaaccatctgcactgccta
ggaaacatcatggaagaaagaggaggtgaaaagagtctaagagctggaga
atggagagacatgctgtgaaatgttgtcttcagaatgtaacatagccact
gcaacatgactttgcaacagtggtggctaccttcaggagatctgagccac
aaaatggatagatactggttgaaaggaagagggggctctgtcagtgggag
agtaaggtggatgggagaggtgatgcattgcatatgtgtttgaaattgac
caagcactttaataaaaggtaatataaaaattacaagcctcatagagtgc
ttttcaaattaaatgcagtctccagtgtctactgtgtagatgagggaaga
ctattgacaatcagtagctgccattttgttgttgtgtgtctgagagtgta
tgtctctactcagaaagacttccagaatgtgtgctctgtcactgaatata
atttgttcctggaaagttccaccacttctttgagatcaaagtttcatctt
tgcctcccactccagacttctgcaaggcgattgtttatcctccttgcttt
gaaggtctttataaagataagtcatctcatgagtttctatgattgagtta
tactgaagttagttctggtgaatagattcccactgtagaactggaaaagt
attttaacagtatcatttctacatctcctgagtcataacaagaaaaaatg
aacaactgtttacccagcaaggtggcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80678724_80679238
seq2: B6Ng01-229H08.b_48_565 (reverse)

seq1  ACACCTGACCA-CCAGAATCCCTGCT-GGAGACCCAGTTTT-GCAATCAT  47
      ||||||||||| |||||||||||||| |||||||||||||| ||||||||
seq2  ACACCTGACCACCCAGAATCCCTGCTGGGAGACCCAGTTTTAGCAATCAT  50

seq1  GTGATTGGTCTGAATCATTGTTTCTGTCACCTGACTTCCCAGCTAGTGTC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGTCTGAATCATTGTTTCTGTCACCTGACTTCCCAGCTAGTGTC  100

seq1  TGGAGCCCTCGGAACTCCAGTGTAATCTCTAGGGTGCCCACCATCAAGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCTCGGAACTCCAGTGTAATCTCTAGGGTGCCCACCATCAAGAT  150

seq1  CCCCCTCCCCCCAGTGGTTTACATGCAAAAATAAAAGCCGCAGAAGTCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCCAGTGGTTTACATGCAAAAATAAAAGCCGCAGAAGTCCA  200

seq1  AAAAAAAAAATATTTTCTAAATTAGAGATACCGATCTGTTGAGAGTCACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATATTTTCTAAATTAGAGATACCGATCTGTTGAGAGTCACA  250

seq1  TATATTGTCATGAGTTTTATTACTTTTGTTTTGTTTTACACTGACTACTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTCATGAGTTTTATTACTTTTGTTTTGTTTTACACTGACTACTT  300

seq1  GTGAAGTGGCACTTTACCAAGTGTCACAGAGTTTTCTTAATAACAGTAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGGCACTTTACCAAGTGTCACAGAGTTTTCTTAATAACAGTAAC  350

seq1  TGCAGCCATGAATAAATATATGTCTATAATCTCATGATGGTCTCCTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATGAATAAATATATGTCTATAATCTCATGATGGTCTCCTTTTT  400

seq1  AGATTCCTTCATATACACCATGCTGGGAAGGACTTCTCCAGCTTAAGATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTCATATACACCATGCTGGGAAGGACTTCTCCAGCTTAAGATG  450

seq1  ACATAAACAACTGTCTACATCTCCCTTGAATTACTCACATGGTTACCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACAACTGTCTACATCTCCCTTGAATTACTCACATGGTTACCAGT  500

seq1  TCTTACATTAAAGAATTC  515
      ||||||||||||||||||
seq2  TCTTACATTAAAGAATTC  518

seq1: chr2_80585427_80586200
seq2: B6Ng01-229H08.g_63_843

seq1  GAATTCTCAGCTCTGAATGTGACATCTATAGCAACCATCTGCACTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCTGAATGTGACATCTATAGCAACCATCTGCACTGCCTA  50

seq1  GGAAACATCATGGAAGAAAGAGGAGGTGAAAAGAGTCTAAGAGCTGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATCATGGAAGAAAGAGGAGGTGAAAAGAGTCTAAGAGCTGGAGA  100

seq1  ATGGAGAGACATGCTGTGAAATGTTGTCTTCAGAATGTAACATAGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGACATGCTGTGAAATGTTGTCTTCAGAATGTAACATAGCCACT  150

seq1  GCAACATGACTTTGCAACAGTGGTGGCTACCTTCAGGAGATCTGAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGACTTTGCAACAGTGGTGGCTACCTTCAGGAGATCTGAGCCAC  200

seq1  AAAATGGATAGATACTGGTTGAAAGGAAGAGGGGGCTCTGTCAGTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATAGATACTGGTTGAAAGGAAGAGGGGGCTCTGTCAGTGGGAG  250

seq1  AGTAAGGTGGATGGGAGAGGTGATGCATTGCATATGTGTTTGAAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTGGATGGGAGAGGTGATGCATTGCATATGTGTTTGAAATTGAC  300

seq1  CAAGCACTTTAATAAAAGGTAATATAAAAATTACAAGCCTCATAGAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTTTAATAAAAGGTAATATAAAAATTACAAGCCTCATAGAGTGC  350

seq1  TTTTCAAATTAAATGCAGTCTCCAGTGTCTACTGTGTAGATGAGGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATTAAATGCAGTCTCCAGTGTCTACTGTGTAGATGAGGGAAGA  400

seq1  CTATTGACAATCAGTAGCTGCCATTTTGTTGTTGTGTGTCTGAGAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACAATCAGTAGCTGCCATTTTGTTGTTGTGTGTCTGAGAGTGTA  450

seq1  TGTCTCTACTCAGAAAGACTTCCAGAATGTGTGCTCTGTCACTGAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTACTCAGAAAGACTTCCAGAATGTGTGCTCTGTCACTGAATATA  500

seq1  ATTTGTTCCTGGAAAGTTCCACCACTTCTTTGAGATCAAAGTTTCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCTGGAAAGTTCCACCACTTCTTTGAGATCAAAGTTTCATCTT  550

seq1  TGCCTCCCACTCCAGACTTCTGCAAGGCGATTGTTTATCCTCCTTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCACTCCAGACTTCTGCAAGGCGATTGTTTATCCTCCTTGCTTT  600

seq1  GAAGGTC-TTATAAAGATAAGTCATCTCATGAG-TTCTATGATTGAGTTA  648
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAGGTCTTTATAAAGATAAGTCATCTCATGAGTTTCTATGATTGAGTTA  650

seq1  TACTGAAGTTAGTTCTGGTGAATAGATT-CCACTGTAG-ACTGG-AAAGT  695
      |||||||||||||||||||||||||||| ||||||||| ||||| |||||
seq2  TACTGAAGTTAGTTCTGGTGAATAGATTCCCACTGTAGAACTGGAAAAGT  700

seq1  ATTTTAACAGTATCATTTCCACATC-CCTGAGTCATAACAAGAAGAAATG  744
      ||||||||||||||||||| ||||| |||||||||||||||||| |||||
seq2  ATTTTAACAGTATCATTTCTACATCTCCTGAGTCATAACAAGAAAAAATG  750

seq1  AGCAACTGTTCA-CCAGCAAGGTGGCTTGGG  774
      | |||||||| | ||||||||||||||||||
seq2  AACAACTGTTTACCCAGCAAGGTGGCTTGGG  781