BAC Information

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BAC

Clone NameB6Ng01-229K02
Chromosome2 (Build37)
Map Location 181,652,191 - 181,653,147
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881
Downstream geneLOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229K02.bB6Ng01-229K02.g
ACCGA042717GA042718
length9541,155
definitionB6Ng01-229K02.b B6Ng01-229K02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaatcctcctgcctctgtctgcctcctaattgctgggagtta
ttattattattattattattattattattattattattattattattatt
atatcaactagttggccctgtttcatttattcatttgaaattagttggct
ggtttgggaggtttctttcttttttttttttttaaagacttatttattta
ttatatgtaagtacactgtagctgtcttcagacactccagaagagggagt
cagatcttgttacggatggttgtgagccaccatgtggttgctgggatttg
aactctggaccatcggaagagcagtcgggtgctctaacccactgagccat
ctcaccagcccgggaggtttcttttgttttagatttgggtgttttcttag
tctgaggaaaaaataaaatattgggctacgtttcattgcttcatttctat
ttctcttttttttctttcagatcaggaggtccgctagttcctcctgtctt
ctgtttttcataacccacgcacacaagcatgctccatccacagtggggaa
aaatcatgggggaagacggtagacattgcattgggaagatgtgctagtga
accagagagtttggatgtcaagccgtataatgtttattacaatatagaaa
agttctaacaaagtgatctttaacttttttttttttttttctccttctac
ttctacttgttctcactctgccaccaacgtggcaggctttgtacaaagaa
tgtgagctttgttttgcttaacagacatatattttttcttttggttttgc
ttgacatgggtttccctttctatccgtgcagggttcccagactgcctttt
tgagaataaaatgggaggccagaaccaaagtcttttgaataagcaccaca
acttctaacctgtttgctgttttccttccagcacagatctttcccagcat
gaaa
gaattcaaggccaccatggccatggtcggcaaagtgagttccagaacagc
cagggctatagggagaaaccctgtctggaaaaaaaaaaaacaaaataaat
aaaataaaataaaataaaataaaataaaataaaataaaataagaaataga
aatgaaaaagaattagaaaaaagattacagaaataaaacataagcccact
agattgcaggttaccccaatcacagcagaagtatcaaacacacacacaca
cacacacacacacacacacacacatgcacacacactctgtcataaaatcc
aatgtgccaggacagccagggctatacagagaaaccctgtctcgaaaaac
caaaacaagcaaaaaaacaaaaaacaaaaatccaatgtgccttcatgatc
aaaattcgatagtcaatagtactagaagaatcatatgtctgaaaatcctt
ccttccttcctttctttctttctttctttctttctttctttctttctttc
tttctccctttctttctttctttctttctttctttctttctttctttctt
tctttcttattacaaatagttttcaatgtaagtgtgtgtttgtgctttat
ctgctgcgtatatacctgcatgccaggagagggcaacagaacctaggaga
aaccaccatgcagctcctgagaataaatgaaaaaacaacaaaaaaggaaa
ttctaatcacatagaatgtagatatatgcaaggctgtcagagtgcttttt
aaggcttagtgtaagtaatgaaaattgttgtgtgtcttttatccaaacac
agaaagcagatggttcgcctgcatgtctgttgtctgcatgtctacttcct
tgttctgtcactcgggttgcactttgacctcaccaagctgaaagacaaca
tgtgcatggcagccattcttgtctgctaactgaactcccgcacaacaaga
tggaggtggctggccttcatgtgacctattgtttcagtcgcttggtttct
cccttcacggttttagttgcccggtttgcagtgcagaatgtgaggaggct
cctaagcagctcgaacatcacaagaacagcctcacggtttttcttctacc
tttttcttatgtcctttgacggcgaacttggatggtcagtctaattcttt
tgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181652191_181653147
seq2: B6Ng01-229K02.b_49_995

seq1  TCAGAAATCCTCCTGCCTCTGTCTGCCTCCCAATTGCTGGGAGTAAAGGT  50
      |||||||||||||||||||||||||||||| ||||||||||||       
seq2  TCAGAAATCCTCCTGCCTCTGTCTGCCTCCTAATTGCTGGGAG-------  43

seq1  GTGCTGCACCACTGTCTGTCATCATCATCATCATTATTATTATTATTATT  100
                                 | || ||||||||||||||||||
seq2  ---------------------------TTATTATTATTATTATTATTATT  66

seq1  ATTATTATTATTATTATTATTATTATTGTTATACATAATGAGATCAACTA  150
      ||||||||||||||||||||||||||| ||||          ||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTAT----------ATCAACTA  106

seq1  GTTGGCCCAGTTTCGTTTATTCATTTGAAATTAGTTGGACCAATTAGTTG  200
      |||||||| ||||| |||||||||||||             |||||||||
seq2  GTTGGCCCTGTTTCATTTATTCATTTGA-------------AATTAGTTG  143

seq1  GCTGGTTTGGGAGGTTTCTTTTGTTT---------------CCGATTTGG  235
      |||||||||||||||||||||  |||               |  ||||  
seq2  GCTGGTTTGGGAGGTTTCTTTCTTTTTTTTTTTTTTAAAGACTTATTTAT  193

seq1  GTGTT---TG---------TGGGGCTG--------------------GGG  253
       | ||   ||         ||  ||||                    |||
seq2  TTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGG  243

seq1  A-TCAGGTAT-----------------------------CTCTCAGGTAT  273
      | |||| | |                              |  | || ||
seq2  AGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT  293

seq1  CTCAAC---GGA--AT-GGATGA------AGGT----TA---CAGTGAGA  304
       | |||   |||  || ||| ||       |||    ||   || |||| 
seq2  TTGAACTCTGGACCATCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGC  343

seq1  TGGCT------------AGAT---TTTTG-CAAAGATT----ACTTTTCT  334
         ||            || |   |||||    |||||      ||||||
seq2  CATCTCACCAGCCCGGGAGGTTTCTTTTGTTTTAGATTTGGGTGTTTTCT  393

seq1  TAGTCTGAGGAAAAAAATAAAATATTGGGCTACGTCTATATTGCTTCATT  384
      |||||||||| |||||||||||||||||||||||| |  |||||||||||
seq2  TAGTCTGAGG-AAAAAATAAAATATTGGGCTACGT-TTCATTGCTTCATT  441

seq1  TCTATTTCTCTTTTTTTTCTTTCAGATAAGGAGGTCGGCCAGTTCCTCCT  434
      ||||||||||||||||||||||||||| |||||||| || ||||||||||
seq2  TCTATTTCTCTTTTTTTTCTTTCAGATCAGGAGGTCCGCTAGTTCCTCCT  491

seq1  GCCTTCTGTTTTTCATAACCCACGCACACATGCACGCTCCATCCACAGTG  484
      | |||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  GTCTTCTGTTTTTCATAACCCACGCACACAAGCATGCTCCATCCACAGTG  541

seq1  GAGAACAATCATGGAGGAAGA-GGTAGGCATTGCATTGGGAGGCATTGTC  533
      | ||| |||||||| |||||| ||||| |||||||||||||         
seq2  GGGAAAAATCATGGGGGAAGACGGTAGACATTGCATTGGGA---------  582

seq1  TGAGAAATGTGCTAGTGAACCAGAGAGTTTGGATGTCAAGCCATATAATG  583
          | |||||||||||||||||||||||||||||||||||| |||||||
seq2  ----AGATGTGCTAGTGAACCAGAGAGTTTGGATGTCAAGCCGTATAATG  628

seq1  TTTCTTAAAATATAGAAAAG-TCTAACAAAGTGATCTTTAACTTTTTT--  630
      ||| ||| |||||||||||| |||||||||||||||||||||||||||  
seq2  TTTATTACAATATAGAAAAGTTCTAACAAAGTGATCTTTAACTTTTTTTT  678

seq1  ------------TTCTCCTTCTACTTGTTCTCACTCTGCCACCAAGGTGG  668
                  |||| |||||||||||||||||||||||||||| ||||
seq2  TTTTTTTTCTCCTTCTACTTCTACTTGTTCTCACTCTGCCACCAACGTGG  728

seq1  CAGGCAGGCTATCAGCCTTTGTACAATGAGTGTGAGCTTGCTTTGCTTTG  718
      ||||            |||||||||| || ||||||              
seq2  CAGG------------CTTTGTACAAAGAATGTGAG--------------  752

seq1  CTTTTCTTTGCTTTGCTTAACAGACATATATTTTTTCTTTTGGTTTTGCT  768
           ||||| |||||||||||||||||||||||||||||||||||||||
seq2  -----CTTTGTTTTGCTTAACAGACATATATTTTTTCTTTTGGTTTTGCT  797

seq1  TGCTTGACTTCATTTGATATGACAT-GGTTTCCCTTTCTATCCATGCAGG  817
                         |||||| ||||||||||||||||| ||||||
seq2  -------------------TGACATGGGTTTCCCTTTCTATCCGTGCAGG  828

seq1  GTTCCCAGGCTGCC-CTTTGAGAATAAAATGGGAGGCCAGAACCAAAGTC  866
      |||||||| |||||  ||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGACTGCCTTTTTGAGAATAAAATGGGAGGCCAGAACCAAAGTC  878

seq1  TTTTGGATAAAGCGCCACAACAAACTACTACGCACTAGCACTAACCCGTT  916
      ||||| || |||| |||||||                   |||||| |||
seq2  TTTTGAAT-AAGCACCACAAC-----------------TTCTAACCTGTT  910

seq1  TGGCTGCCTTCCTTCCCAAGGCACAGATCTTTCCCAGCATG  957
      | ||||  ||||||||    |||||||||||||||||||||
seq2  T-GCTGTTTTCCTTCC---AGCACAGATCTTTCCCAGCATG  947