BAC Information

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BAC

Clone NameB6Ng01-229K03
Chromosome2 (Build37)
Map Location 141,817,254 - 141,980,221
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229K03.bB6Ng01-229K03.g
ACCGA042719GA042720
length1,1671,156
definitionB6Ng01-229K03.b B6Ng01-229K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,817,254 - 141,818,431)(141,979,062 - 141,980,221)
sequence
gaattcattttatttttgcctataatttttgttttttacatattgcaggt
cctttaccgggcaaaagttccccctaccttattgccaattcactatatca
gtgtcccacataaattggaaacatttcttaaagcttctacaatattccag
tttggaattaagtacacatggacaaaaaatgttttggaagaagtggatcc
tagactatagaacccagattcagccctctgtttcttctcagcccatactt
tgaatatcctcttctgtgttacaaggtgtgatggagaatttgaaagaaag
tctggaggccaaacgtttagttatggatatttgatagcgtggcttagaag
atgtcatgggatcatttgtgggtgtttatcaccttttatctgacatctaa
agatctgcactgtcttatgagagaataaaaggacacaactttcatcttat
tatgttaccaaagacagttataagtttctaacatgaagccttttcttgat
catgtgacctggcccaggcggtggtagtttatcagctgctcagctggctg
ccagtgactgagcgagctttagctctgcatctagtgtgttggccagaact
ctttatttctcttgcccttggtctctcattttagcccctcatttggcctt
tcatcttcaacatactgctgaaataattcccataacactcaagtattgga
atcaacaagacaaagcccagtggagggtacactccaaaactttagtttca
tcctgttagctcctgaaacctttgcctagttgttggtggaagaaaatgtg
atgtcagcttgcaagaatatgagtgcaacggaaaagacttttgtggtcat
tggcataatcaccacagaaagagaaatggcctcctagagcatcagaagag
ctggagtgggcaccgctttccaaaacccaccttcagttcctcctggcatt
aagttcaaggtgggagacaatggcacagtctactctgcataagaatccct
gtaactcctcactagccaagggaaatacaagcaggaaatacacacccagt
ggtcagcctgatgggccaggttactgcctcccttagaaagagctttgtta
ggcagcctccaagcttagcatacattatatgttacattaggcactgaaat
taagttataatgtgtaa

gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaacat
gctcagcatccttaatcatcagagaaatgcaaatcaaaataacccggaga
ttccatctcacactagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcctcccttgtgaag
actttctatgtttaaatttcaaccgacttcacaagggttttctgaaaaca
aaaattacctttataagagcaatggcttttttaaaatgcattttcagact
taagactatagatgaattataatttagccaaatatagataatgttagata
tattctagagtctgctatagctggctctggaaatattaatttaatttggc
tacagtgtctttttttccaatagaatcagtataattagtgtgtttgcatt
ttacttggtgctgtcttagaagataatgtaatgaacctgtcagagatgag
aacatgcccaggcttggagtcattttataactcaaaataataagataaag
aagcacctttgaacaaattttattttgtccttaagttaaggttatatgct
ctggactaatgagtcacctggagaatattatcactgctgcatcatggtca
taaagaaatatttcacatgaacttgtacagccccactttggaaacaacgc
tatcacctccggtataatctgtgggtcaaaagcagttgtacagatgaagc
aaaagttaagtagcagggtctccatttctcagcacgagacaataacaggg
atgatgatgtggagtggttgagaactgggtgtgatgactcaactcaccac
agtgagaactcaccacagttggactctgctctcgttctgtggatcttgct
gattgaagcagtgctatacatgctctaaacgccctttctgtccctgctct
ttagggagaggtatgcaacaaggggcttcttttgatatatgaaggacaaa
atattaaggcctctatgttggcctgattatggagagcccacatcaaatgt
aagaaaggagactaagctgactcatggcctagtacatctctctgaaaata
gaaggaatatttaaggttgaggaagactaagcagtctagagaatgtgtcc
tatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141817254_141818431
seq2: B6Ng01-229K03.b_45_1211

seq1  GAATTCATTTTATTTTTGCCTATAATTTTTGTTTTTTACATATTGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATTTTTGCCTATAATTTTTGTTTTTTACATATTGCAGGT  50

seq1  CCTTTACCGGGCAAAAGTTCCCCCTACCTTATTGCCAATTCACTATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCGGGCAAAAGTTCCCCCTACCTTATTGCCAATTCACTATATCA  100

seq1  GTGTCCCACATAAATTGGAAACATTTCTTAAAGCTTCTACAATATTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCACATAAATTGGAAACATTTCTTAAAGCTTCTACAATATTCCAG  150

seq1  TTTGGAATTAAGTACACATGGACAAAAAATGTTTTGGAAGAAGTGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTAAGTACACATGGACAAAAAATGTTTTGGAAGAAGTGGATCC  200

seq1  TAGACTATAGAACCCAGATTCAGCCCTCTGTTTCTTCTCAGCCCATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTATAGAACCCAGATTCAGCCCTCTGTTTCTTCTCAGCCCATACTT  250

seq1  TGAATATCCTCTTCTGTGTTACAAGGTGTGATGGAGAATTTGAAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCCTCTTCTGTGTTACAAGGTGTGATGGAGAATTTGAAAGAAAG  300

seq1  TCTGGAGGCCAAACGTTTAGTTATGGATATTTGATAGCGTGGCTTAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGCCAAACGTTTAGTTATGGATATTTGATAGCGTGGCTTAGAAG  350

seq1  ATGTCATGGGATCATTTGTGGGTGTTTATCACCTTTTATCTGACATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGGGATCATTTGTGGGTGTTTATCACCTTTTATCTGACATCTAA  400

seq1  AGATCTGCACTGTCTTATGAGAGAATAAAAGGACACAACTTTCATCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCACTGTCTTATGAGAGAATAAAAGGACACAACTTTCATCTTAT  450

seq1  TATGTTACCAAAGACAGTTATAAGTTTCTAACATGAAGCCTTTTCTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACCAAAGACAGTTATAAGTTTCTAACATGAAGCCTTTTCTTGAT  500

seq1  CATGTGACCTGGCCCAGGCGGTGGTAGTTTATCAGCTGCTCAGCTGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCTGGCCCAGGCGGTGGTAGTTTATCAGCTGCTCAGCTGGCTG  550

seq1  CCAGTGACTGAGCGAGCTTTAGCTCTGCATCTAGTGTGTTGGCCAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACTGAGCGAGCTTTAGCTCTGCATCTAGTGTGTTGGCCAGAACT  600

seq1  CTTTATTTCTCTTGCCCTTGGTCTCTCATTTTAGCCCCTCATTTGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTCTTGCCCTTGGTCTCTCATTTTAGCCCCTCATTTGGCCTT  650

seq1  TCATCTTCAACATACTGCTGAAATAATTCCCATAACACTCAAGTATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAACATACTGCTGAAATAATTCCCATAACACTCAAGTATTGGA  700

seq1  ATCAACAAGACAAAGCCCAGTGGAGGGTACACTCCAAAACTTTAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAGACAAAGCCCAGTGGAGGGTACACTCCAAAACTTTAGTTTCA  750

seq1  TCCTGTTAGCTCCTGAAACCTTTGCCTAGTTGTTGGTGGAAGAAAATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTAGCTCCTGAAACCTTTGCCTAGTTGTTGGTGGAAGAAAATGTG  800

seq1  ATGTCAGCTTGCAAGAATATGAGTGCAACGGAAAAGACTTTTGTGGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCTTGCAAGAATATGAGTGCAACGGAAAAGACTTTTGTGGTCAT  850

seq1  TGGCATAATCACCACAGAAAGAGAAATGGCCTCCTAAGAGCATCAGAAGA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGCATAATCACCACAGAAAGAGAAATGGCCTCCT-AGAGCATCAGAAGA  899

seq1  GCTGGAGTGGGCACCGCTTTCCAAAACCCACCTTCAGTTCCTCCTGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTGGGCACCGCTTTCCAAAACCCACCTTCAGTTCCTCCTGGCAT  949

seq1  TAAGTTCAAGGTGGGAGACAATGGGCACAGTCTACTCTGCATAAGGAATC  1000
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TAAGTTCAAGGTGGGAGACAAT-GGCACAGTCTACTCTGCATAA-GAATC  997

seq1  CCTGTAACTCCTCACTTAGCCAAAGGGAAATTACAGCAGGAAATACAACC  1050
      ||||||||||||||| ||||| |||||||||   |||||||||||||   
seq2  CCTGTAACTCCTCAC-TAGCC-AAGGGAAATACAAGCAGGAAATACA---  1042

seq1  AACCCAGTGGTCCAGCCTGATGGGCCAGTTTACTGCCCTCCCCTAGAAGA  1100
       |||||||||| |||||||||||||||| |||||| |||||| ||||| |
seq2  CACCCAGTGGT-CAGCCTGATGGGCCAGGTTACTG-CCTCCCTTAGAA-A  1089

seq1  GGCTTTTGTTAGGCAAGCCTCAAAAGGCTTAGCATAC--TATATGTTACA  1148
      |   |||||||||| |||||| ||  |||||||||||  |||||||||||
seq2  GAGCTTTGTTAGGC-AGCCTCCAA--GCTTAGCATACATTATATGTTACA  1136

seq1  TAAAGCAACTGAAA-TAAGTTATTA-GTGTAA  1178
      | | || ||||||| |||||||| | ||||||
seq2  TTAGGC-ACTGAAATTAAGTTATAATGTGTAA  1167


seq1: chr2_141979062_141980221
seq2: B6Ng01-229K03.g_68_1223 (reverse)

seq1  AATATTAGGACACATTTCTCTAGCCCTGGCCTTTGTTCTTCCTCTACCTT  50
      |||| ||||||||| ||||||||  |||  ||| | |||||||| |||||
seq2  AATA-TAGGACACA-TTCTCTAG-ACTG--CTTAG-TCTTCCTCAACCTT  44

seq1  -AATATTCCTCCTATTTTCAGAG-GATGTACTA-GCCATGAGTCAGCTTA  97
       ||||||||| |||||||||||| ||||||||| ||||||||||||||||
seq2  AAATATTCCTTCTATTTTCAGAGAGATGTACTAGGCCATGAGTCAGCTTA  94

seq1  GTCT-CTTTCTTACATTTGATTGTGGGCCTCCTCATAATCAAGGCCAACA  146
      |||| ||||||||||||||| |||||| |||  ||||||| |||||||| 
seq2  GTCTCCTTTCTTACATTTGA-TGTGGG-CTCTCCATAATC-AGGCCAAC-  140

seq1  ATAGAGGCC-TAATATTTTGTCCTTCATATATCAAAAGAAGCCCCTTGTT  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCCTTAATATTTTGTCCTTCATATATCAAAAGAAGCCCCTTGTT  190

seq1  GCATACCTCTCCCTAAAGAGCAGGGACAGAAA-GGCGTTTAGAGCATGTA  244
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATACCTCTCCCTAAAGAGCAGGGACAGAAAGGGCGTTTAGAGCATGTA  240

seq1  TAGCACTGCTTCAATCAGCAAGATCCACAGAACGAGAGCAGAGTCCAACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGCTTCAATCAGCAAGATCCACAGAACGAGAGCAGAGTCCAACT  290

seq1  GTGGTGAGTTCTCACTGTGGTGAGTTGAGTCATCACACCCAGTTCTCAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGTTCTCACTGTGGTGAGTTGAGTCATCACACCCAGTTCTCAAC  340

seq1  CACTCCACATCATCATCCCTGTTATTGTCTCGTGCTGAGAAATGGAGACC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACATCATCATCCCTGTTATTGTCTCGTGCTGAGAAATGGAGACC  390

seq1  CTGCTACTTAACTTTTGCTTCATCTGTACAACTGCTTTTGACCCACAGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTTAACTTTTGCTTCATCTGTACAACTGCTTTTGACCCACAGAT  440

seq1  TATACCGGAGGTGATAGCGTTGTTTCCAAAGTGGGGCTGTACAAGTTCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCGGAGGTGATAGCGTTGTTTCCAAAGTGGGGCTGTACAAGTTCAT  490

seq1  GTGAAATATTTCTTTATGACCATGATGCAGCAGTGATAATATTCTCCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATTTCTTTATGACCATGATGCAGCAGTGATAATATTCTCCAGG  540

seq1  TGACTCATTAGTCCAGAGCATATAACCTTAACTTAAGGACAAAATAAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATTAGTCCAGAGCATATAACCTTAACTTAAGGACAAAATAAAAT  590

seq1  TTGTTCAAAGGTGCTTCTTTATCTTATTATTTTGAGTTATAAAATGACTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAAGGTGCTTCTTTATCTTATTATTTTGAGTTATAAAATGACTC  640

seq1  CAAGCCTGGGCATGTTCTCATCTCTGACAGGTTCATTACATTATCTTCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGGGCATGTTCTCATCTCTGACAGGTTCATTACATTATCTTCTA  690

seq1  AGACAGCACCAAGTAAAATGCAAACACACTAATTATACTGATTCTATTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACCAAGTAAAATGCAAACACACTAATTATACTGATTCTATTGG  740

seq1  AAAAAAAGACACTGTAGCCAAATTAAATTAATATTTCCAGAGCCAGCTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACACTGTAGCCAAATTAAATTAATATTTCCAGAGCCAGCTAT  790

seq1  AGCAGACTCTAGAATATATCTAACATTATCTATATTTGGCTAAATTATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTCTAGAATATATCTAACATTATCTATATTTGGCTAAATTATAA  840

seq1  TTCATCTATAGTCTTAAGTCTGAAAATGCATTTTAAAAAAGCCATTGCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATAGTCTTAAGTCTGAAAATGCATTTTAAAAAAGCCATTGCTC  890

seq1  TTATAAAGGTAATTTTTGTTTTCAGAAAACCCTTGTGAAGTCGGTTGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGGTAATTTTTGTTTTCAGAAAACCCTTGTGAAGTCGGTTGAAA  940

seq1  TTTAAACATAGAAAGTCTTCACAAGGGAGGAGTGTTCCTCTTTCTCCACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATAGAAAGTCTTCACAAGGGAGGAGTGTTCCTCTTTCTCCACA  990

seq1  TCCTTGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGA  1040

seq1  CTAGTGTGAGATGGAATCTCCGGGTTATTTTGATTTGCATTTCTCTGATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGAGATGGAATCTCCGGGTTATTTTGATTTGCATTTCTCTGATG  1090

seq1  ATTAAGGATGCTGAGCATGTTTTTCAGGTGCTTCTCAGCCATTCGGTATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGATGCTGAGCATGTTTTTCAGGTGCTTCTCAGCCATTCGGTATT  1140

seq1  CCTCAGGTGAGAATTC  1160
      ||||||||||||||||
seq2  CCTCAGGTGAGAATTC  1156


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