BAC Information

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BAC

Clone NameB6Ng01-229P10
Chromosome2 (Build37)
Map Location 101,609,302 - 101,610,323
singlet/doubletsinglet
Overlap gene2600010E01Rik
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6
Downstream geneLOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P10.b
ACCGA042953
length1,022
definitionB6Ng01-229P10.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccactactcaagatgcagaggcgggaagctcaagatgccagcttg
gtctgtagtatgagttccaggaaagctagggttacacggtgagagtctca
aataatttttaaaagaaacaaagatatgaagaagttttaaataaaaatct
taactgcaggagcatcactacatgctggagccagactccccatttggaag
accccttggcaggcaggtgacatcagggctggctcccatctttctagctg
cccactaagatctttgaagtacaatgtcaggatctgtctcctgaggtgag
aaacaattagcacattccggatccactgacttatttatttatacttctac
tgggggctgaggaacctcagggaaaggccaggaactcagtgcttggaata
agctgggctctttcttgctagtctgtggctggtgacccggctttggccct
gacacacaccttctcaggacctcactttcctcccctgtaaaatgaggctt
tgggctagccggtctcctttgtctctttccacatttatgtaattgtgaca
tgaaattcaagtgcataggagaaatgtaacacagatgtttgcttatgtgc
tgtacaggttttaatgaaaacagagctcttaaatacccagctgaccttaa
cacagaccttaattcaacataaacaaggcctgaacaatggccttgtttgt
tgttctgcccactgcagagctggtctttagcctagatattctgtatttaa
catacccagagaggaattaaaaggctagctaattcaacctcctaacccta
gctgagtctaaggctgttatttcaccaagacacaaatccaactgtattac
caccccctcctcctgcaccctctgtattagcttctttccgtccttgctat
tgcaagcatagaacctgtgtgttttctgattctcctactgaagtccctgt
cccccgagcaattccctgttgatccctcagaatcatagcataagcatcac
ctctgctgttcctttgacttct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101609302_101610323
seq2: B6Ng01-229P10.b_44_1065

seq1  GAATTCCACTACTCAAGATGCAGAGGCAGGAAGCTCAAGATGCCAGCTTG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCACTACTCAAGATGCAGAGGCGGGAAGCTCAAGATGCCAGCTTG  50

seq1  GTCTGTAGTATGAGTTCCAGGAAAGCTAGGGTTACACGGTGAGAGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGTATGAGTTCCAGGAAAGCTAGGGTTACACGGTGAGAGTCTCA  100

seq1  AATAATTTTTAAAAGAAACAAAGATATGAAGAAGTTTTAAATAAAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAAAAGAAACAAAGATATGAAGAAGTTTTAAATAAAAATCT  150

seq1  TAACTGCAGGAGCATCACTACATGCTGGAGCCAGACTCCCCATTTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAGGAGCATCACTACATGCTGGAGCCAGACTCCCCATTTGGAAG  200

seq1  ACCCCTTGGCAGGCAGGTGACATCAGGGCTGGCTCCCATCTTTCTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGGCAGGCAGGTGACATCAGGGCTGGCTCCCATCTTTCTAGCTG  250

seq1  CCCACTAAGATCTTTGAAGTACAATGTCAGGATCTGTCTCCTGAGGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAGATCTTTGAAGTACAATGTCAGGATCTGTCTCCTGAGGTGAG  300

seq1  AAACAATTAGCACATTCCGGATCCACTGACTTATTTATTTATACTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTAGCACATTCCGGATCCACTGACTTATTTATTTATACTTCTAC  350

seq1  TGGGGGCTGAGGAACCTCAGGGAAAGGCCAGGAACTCAGTGCTTGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGAGGAACCTCAGGGAAAGGCCAGGAACTCAGTGCTTGGAATA  400

seq1  AGCTGGGCTCTTTCTTGCTAGTCTGTGGCTGGTGACCCGGCTTTGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTCTTTCTTGCTAGTCTGTGGCTGGTGACCCGGCTTTGGCCCT  450

seq1  GACACACACCTTCTCAGGACCTCACTTTCCTCCCCTGTAAAATGAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACCTTCTCAGGACCTCACTTTCCTCCCCTGTAAAATGAGGCTT  500

seq1  TGGGCTAGCCGGTCTCCTTTGTCTCTTTCCACATTTATGTAATTGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGCCGGTCTCCTTTGTCTCTTTCCACATTTATGTAATTGTGACA  550

seq1  TGAAATTCAAGTGCATAGGAGAAATGTAACACAGATGTTTGCTTATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCAAGTGCATAGGAGAAATGTAACACAGATGTTTGCTTATGTGC  600

seq1  TGTACAGGTTTTAATGAAAACAGAGCTCTTAAATACCCAGCTGACCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGTTTTAATGAAAACAGAGCTCTTAAATACCCAGCTGACCTTAA  650

seq1  CACAGACCTTAATTCAACATAAACAAGGCCTGAACAATGGCCTTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCTTAATTCAACATAAACAAGGCCTGAACAATGGCCTTGTTTGT  700

seq1  TGTTCTGCCCACTGCAGGGCTGGTCTTTAGCCTAGATATTCTGTATTTAA  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTCTGCCCACTGCAGAGCTGGTCTTTAGCCTAGATATTCTGTATTTAA  750

seq1  CATACCCAGAGAGGAATTAAAAGGCTAGCTAATTCAACCTCCTAACCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCAGAGAGGAATTAAAAGGCTAGCTAATTCAACCTCCTAACCCTA  800

seq1  GCTGAGTCTAAGGCTGTTATTTCACCAAGACACAAATCCAACTGTATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCTAAGGCTGTTATTTCACCAAGACACAAATCCAACTGTATTAC  850

seq1  CA-CCCCTCCTCCTGCACCCTCTGTATTTAGCTTTCTTTCCGTTCCTTGC  899
      || ||||||||||||||||||||||| ||||| ||||||||| |||||||
seq2  CACCCCCTCCTCCTGCACCCTCTGTA-TTAGC-TTCTTTCCG-TCCTTGC  897

seq1  TTATTGCAAGCATAGAACCTGTGTGTTTTCTGATTCTCCCACCTGAAGTC  949
       |||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  -TATTGCAAGCATAGAACCTGTGTGTTTTCTGATTCTCCTA-CTGAAGTC  945

seq1  CCCTTCCCCCAAGCAA-TCCCTGTTG-TCCCTCAG-ATCATAGCATAAGC  996
      ||  |||||| ||||| ||||||||| |||||||| ||||||||||||||
seq2  CCTGTCCCCCGAGCAATTCCCTGTTGATCCCTCAGAATCATAGCATAAGC  995

seq1  ATCACCTCTGCTG-TCCCTTGACTTCT  1022
      ||||||||||||| ||| |||||||||
seq2  ATCACCTCTGCTGTTCCTTTGACTTCT  1022