BAC Information

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BAC

Clone NameB6Ng01-230H11
Chromosome2 (Build37)
Map Location 53,535,381 - 53,566,880
singlet/doubletdoublet
Overlap geneLOC207933
Upstream geneStam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H11.bB6Ng01-230H11.g
ACCGA043323GA043324
length1,112800
definitionB6Ng01-230H11.b B6Ng01-230H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,535,381 - 53,536,494)(53,566,081 - 53,566,880)
sequence
gaattcttgcagctgatcccatccatcccgagtggtgtatccacctgaat
gtcttattagttctgttgcagttgagttaatgttgcattacctggagcca
gactctgcgttgcaattctctgtgatttgttgagtgactgagggactcac
aactctcatggaaggaatgctgaagtggctgaaactatacaccactagag
tctaagaaaggaatcaggaactaaaatggagtgaatctaatctctgtaga
aaacagctcagcaatgactagttgtccctattttatgtcacttgtctccc
cttcctcagtgtctgtgttgaaatttgtttgatctttttggtgtggatgg
acaggattggattttgaaatctccagcagtcatgggccacattataagtc
tacaaatcatgtgagtttgtttaccttgcactgtggacaaactttgcaat
caaggcttcaagtcctagtaatttatttttctcttttctctaccatgctg
gggaatcctgagatttgaagtatcaggtttatttgaatcaaatgctgtgt
agactactagtactaggtagttagccacctgtgtccacataccacctgag
aatacaggttatagaagagtttggttctggttttcttcccccagttgtat
ttattaccaacacatttgcttcagttttcctcaccacagccaatacagac
acactgccaattctttgtcattacttcctgaagagctgggaaacgccatg
ttactggtgtataacacacaacttacactagtaattttatttcttggcta
gttatttttcttccttactttttttcccctcctttcatatgttcctcttt
tttttttgtggcatcttactatgtagtataggctgactttgaacttgtca
tcctgcttgagtgtgtacctgtggattatacgtgtgatcactgcacctgg
ctatactttttattttattctaatcatttttgacttttggattcaacaat
aaagtatatctcgtgaagaatacttgatctttttctattctgagcttact
atactgaactttgaacttccgagatcatattttttatttatgatggataa
aaacatgttttt

gaattccatagggaaatctttcatgggtaaggatgtagttggctgtacaa
ggtcctggagtcagttttcaacactaaattgtcaatcaatttatgtatgt
atctatcatctagctacctatatacatacctacctacctttatacatctg
tctatatctatatctgtccttttttctttacatttaagccatatttcaaa
ataaataataccaatagtaaactaaatatttgatctcccttatgcttaaa
atgcacagcatcaaggttatataagtctataaaagtaggcattgtaatct
ggaaatttctaccagctctcatctgaaaagataagttatccatgaccctt
ctttgctggtgtggctctgtggtaacttaattggtttattctttagccac
taaagttgccgtttaccattgctgaaattagctctctgttcatatctttg
aaactcttcatcattgtcctgttcttcattgtcaccaatttccatcagtt
agtattttctttgggaaagtaattatattctttactaagccacttattca
caggctgcaaacctgataatgaatctccatattaaagccattccttccaa
gtctatgtggtcctctagaatatattccattcccccatttctaacttttc
ttactgctaatgacatgagttcaacagaacaaagctttggggtttaacgg
tgccatttatttctcatatttatcatcatcagtcttttcaatttccatac
aaaggtaaaaaagtaaaggaaggaaggaggaagggagggagggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53535381_53536494
seq2: B6Ng01-230H11.b_44_1155

seq1  GAATTCTTGCAGCTGATCCCATCCATCCCGAGTGGTGTATCCACCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGCTGATCCCATCCATCCCGAGTGGTGTATCCACCTGAAT  50

seq1  GTCTTATTAGTTCTGTTGCAGTTGAGTTAATGTTGCATTACCTGGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTAGTTCTGTTGCAGTTGAGTTAATGTTGCATTACCTGGAGCCA  100

seq1  GACTCTGCGTTGCAATTCTCTGTGATTTGTTGAGTGACTGAGGGACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCGTTGCAATTCTCTGTGATTTGTTGAGTGACTGAGGGACTCAC  150

seq1  AACTCTCATGGAAGGAATGCTGAAGTGGCTGAAACTATACACCACTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCATGGAAGGAATGCTGAAGTGGCTGAAACTATACACCACTAGAG  200

seq1  TCTAAGAAAGGAATCAGGAACTAAAATGGAGTGAATCTAATCTCTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAAGGAATCAGGAACTAAAATGGAGTGAATCTAATCTCTGTAGA  250

seq1  AAACAGCTCAGCAATGACTAGTTGTCCCTATTTTATGTCACTTGTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCAGCAATGACTAGTTGTCCCTATTTTATGTCACTTGTCTCCC  300

seq1  CTTCCTCAGTGTCTGTGTTGAAATTTGTTTGATCTTTTTGGTGTGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGTGTCTGTGTTGAAATTTGTTTGATCTTTTTGGTGTGGATGG  350

seq1  ACAGGATTGGATTTTGAAATCTCCAGCAGTCATGGGCCACATTATAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTGGATTTTGAAATCTCCAGCAGTCATGGGCCACATTATAAGTC  400

seq1  TACAAATCATGTGAGTTTGTTTACCTTGCACTGTGGACAAACTTTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCATGTGAGTTTGTTTACCTTGCACTGTGGACAAACTTTGCAAT  450

seq1  CAAGGCTTCAAGTCCTAGTAATTTATTTTTCTCTTTTCTCTACCATGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTCAAGTCCTAGTAATTTATTTTTCTCTTTTCTCTACCATGCTG  500

seq1  GGGAATCCTGAGATTTGAAGTATCAGGTTTATTTGAATCAAATGCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCTGAGATTTGAAGTATCAGGTTTATTTGAATCAAATGCTGTGT  550

seq1  AGACTACTAGTACTAGGTAGTTAGCCACCTGTGTCCACATACCACCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTAGTACTAGGTAGTTAGCCACCTGTGTCCACATACCACCTGAG  600

seq1  AATACAGGTTATAGAAGAGTTTGGTTCTGGTTTTCTTCCCCCAGTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGTTATAGAAGAGTTTGGTTCTGGTTTTCTTCCCCCAGTTGTAT  650

seq1  TTATTACCAACACATTTGCTTCAGTTTTCCTCACCACAGCCAATACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCAACACATTTGCTTCAGTTTTCCTCACCACAGCCAATACAGAC  700

seq1  ACACTGCCAATTCTTTGTCATTACTTCCTGAAGAGCTGGGAAACGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCAATTCTTTGTCATTACTTCCTGAAGAGCTGGGAAACGCCATG  750

seq1  TTACTGGTGTATAACACACAACTTACACTAGTAATTTTATTTCTTGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTGTATAACACACAACTTACACTAGTAATTTTATTTCTTGGCTA  800

seq1  GTTATTTTTCTTCCTTACTTTTTTTCCCCTCCTTTCATATGTTCCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTCTTCCTTACTTTTTTTCCCCTCCTTTCATATGTTCCTCTTT  850

seq1  TTTTTTTGTGGCATCTTACTATGTAGTATAGGCTGACTTTGAACTTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGGCATCTTACTATGTAGTATAGGCTGACTTTGAACTTGTCA  900

seq1  TCCTGCTTGAGTGTGTACCTGTGGATTATACGTGTGATCACTGCACCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGAGTGTGTACCTGTGGATTATACGTGTGATCACTGCACCTGG  950

seq1  CTATACTTTTTATTTTATTCTAATCATTTTTGACTTTTGGATTC-ACAAT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTATACTTTTTATTTTATTCTAATCATTTTTGACTTTTGGATTCAACAAT  1000

seq1  AAAGTATATCTCGTGGAAGATACTTTGATCTTTTTTCTATTCTGAGCTTA  1049
      ||||||||||||||| |  |||| |||||| |||||||||||||||||||
seq2  AAAGTATATCTCGTGAAGAATAC-TTGATC-TTTTTCTATTCTGAGCTTA  1048

seq1  CTATACTGACCTTTGAAACTTTCGAGATCAATATTTTTATTTTATGAT-G  1098
      ||||||||| ||||| ||||| ||||||| ||||||||  |||||||| |
seq2  CTATACTGAACTTTG-AACTTCCGAGATC-ATATTTTTTATTTATGATGG  1096

seq1  ATAAAAACATGGTTTT  1114
      ||||||||||| ||||
seq2  ATAAAAACATGTTTTT  1112


seq1: chr2_53566081_53566880
seq2: B6Ng01-230H11.g_65_864 (reverse)

seq1  TCTCTCTCCCTCCCTCCCTTCCTCCTTCCTTCCTTTACTTTTTTACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCCCTCCCTTCCTCCTTCCTTCCTTTACTTTTTTACCTTT  50

seq1  GTATGGAAATTGAAAAGACTGATGATGATAAATATGAGAAATAAATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAATTGAAAAGACTGATGATGATAAATATGAGAAATAAATGGCA  100

seq1  CCGTTAAACCCCAAAGCTTTGTTCTGTTGAACTCATGTCATTAGCAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAAACCCCAAAGCTTTGTTCTGTTGAACTCATGTCATTAGCAGTAA  150

seq1  GAAAAGTTAGAAATGGGGGAATGGAATATATTCTAGAGGACCACATAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTAGAAATGGGGGAATGGAATATATTCTAGAGGACCACATAGAC  200

seq1  TTGGAAGGAATGGCTTTAATATGGAGATTCATTATCAGGTTTGCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGAATGGCTTTAATATGGAGATTCATTATCAGGTTTGCAGCCTG  250

seq1  TGAATAAGTGGCTTAGTAAAGAATATAATTACTTTCCCAAAGAAAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTGGCTTAGTAAAGAATATAATTACTTTCCCAAAGAAAATACT  300

seq1  AACTGATGGAAATTGGTGACAATGAAGAACAGGACAATGATGAAGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGGAAATTGGTGACAATGAAGAACAGGACAATGATGAAGAGTTT  350

seq1  CAAAGATATGAACAGAGAGCTAATTTCAGCAATGGTAAACGGCAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATGAACAGAGAGCTAATTTCAGCAATGGTAAACGGCAACTTTA  400

seq1  GTGGCTAAAGAATAAACCAATTAAGTTACCACAGAGCCACACCAGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAAGAATAAACCAATTAAGTTACCACAGAGCCACACCAGCAAAG  450

seq1  AAGGGTCATGGATAACTTATCTTTTCAGATGAGAGCTGGTAGAAATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATGGATAACTTATCTTTTCAGATGAGAGCTGGTAGAAATTTCC  500

seq1  AGATTACAATGCCTACTTTTATAGACTTATATAACCTTGATGCTGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAATGCCTACTTTTATAGACTTATATAACCTTGATGCTGTGCAT  550

seq1  TTTAAGCATAAGGGAGATCAAATATTTAGTTTACTATTGGTATTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCATAAGGGAGATCAAATATTTAGTTTACTATTGGTATTATTTAT  600

seq1  TTTGAAATATGGCTTAAATGTAAAGAAAAAAGGACAGATATAGATATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATGGCTTAAATGTAAAGAAAAAAGGACAGATATAGATATAGA  650

seq1  CAGATGTATAAAGGTAGGTAGGTATGTATATAGGTAGCTAGATGATAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTATAAAGGTAGGTAGGTATGTATATAGGTAGCTAGATGATAGAT  700

seq1  ACATACATAAATTGATTGACAATTTAGTGTTGAAAACTGACTCCAGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATAAATTGATTGACAATTTAGTGTTGAAAACTGACTCCAGGACC  750

seq1  TTGTACAGCCAACTACATCCTTACCCATGAAAGATTTCCCTATGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGCCAACTACATCCTTACCCATGAAAGATTTCCCTATGGAATTC  800


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