BAC Information

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BAC

Clone NameB6Ng01-231B06
Chromosome2 (Build37)
Map Location 25,065,740 - 25,205,925
singlet/doubletdoublet
Overlap geneA730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1
Upstream geneIl1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik
Downstream geneDpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231B06.bB6Ng01-231B06.g
ACCGA043775GA043776
length1,1541,105
definitionB6Ng01-231B06.b B6Ng01-231B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,065,740 - 25,066,902)(25,204,822 - 25,205,925)
sequence
gaattcaggcatccagaatctccacagtcctcttcccacaaaagacccac
cctgcacttcaagggataaatatttccatttggctcaaccaggggaagtg
tgtgatataaagaaggggcccagagcttgctggagggcaagtccatcaaa
ctttcccagagctaagcaacttcctgcactaaacacacagtctgagaggc
tggccccacagttctcaccttgggcaagtgtttcataacacacatcacca
ctggttgtagggatggcatcttgaccaaagaaaagctcttttccagaagg
tcttccagcttcttgtacctgcacagatttgcacagctgaggaagtgtgt
ctccacatgcagaacatacagagaagaggaatccctcaaacacattccat
tccaggttgtatctacaggtagggctgtgcagccatggagaccatcaatg
ctactcacaaagataagcagcttcctggtagagacccacctctcctctgc
ctttccctcagaggcaattgctgacactcgttccagaagtttgtcacgta
gttcatcaaacactgactgatggaactccagccgcggtgtcccgtgtaga
tccaagaagggcagggccgactgcagggaaggcagcaacacgccattctc
tgtctggagaagcagagggtaaacgcgtacgcattttgcttggccgcagc
caagtcagcacggacaccacggatgccgagtactagggtccgccatagta
acagcggaaaagggaaaacactcagttactcagcgggtccctagcgcaga
acctttagcgcctccatccaagcgtcgggagcgcgccgaattgtgtccag
cttccctagctgccccggccccttctgcccacctgaaattgttcaatggc
cttgagaggctcggtgcagttggtcaggtctctttcagtcctcgccattg
gccacgcccaggtcctggagccccgcgaacatggcggagctcggcggacg
ctcggctgtgtaccccatcccccaccgcgctcgctggagccgtagcggac
cctgacgagcccaggagcccttctccacgttgccacgagacccccagccc
gttcgcccgccgcctcaggtgtggcaggatcgcgtcagcgagacagctcg
cacg
gaattctggacgttgttgatagaagaatagccacctgaggggacctgcat
aagagccaaagcctcaatgacacaggttgagccaagccttgtgaagaact
tctagctagacgtgtcactcaggctacttgttcaaccccacatatatggc
cccagggtaggctccatcctagcaactacccaggtaatgtccaaggtcaa
ccacagttctacacaggaccctgtaaaatgccaataacccccaagtggcc
agaaaatacctccaagaagggtacagctacaggacatgaccagggtctag
cttgttaaacacaacccagggcaggcacaggcaagaagctggagttgttg
aggtctggagcaaagagctaggtgtcacacttagaccacatccagctcta
taaccttttctggccatgtcacagtaagagagaaggcaaggtaggccatg
gaccccagttggggaggggtaatgtgtgaggtcagtactctggctcactg
tgagtgtttcataagccaagggtatgacagggcaagagaaaaaagaccct
tctcagaaaagcttgggtcctgagaatgagcccggaaacactgggcatct
ctaagcctgtaaagacaacagggccttgacaccaccaagctcagcaggat
gactacactatcaaggtcacagacaactagggagcagctaactggaggcc
tcagaaaactgactcttcagtctgtgccacagcagtctcaagggtaggtc
cagctacagctttgcaaggacctagctgtgtctgtcaccagccaagacca
cagagaggcacctaacagctcacccgtgtgtacttattgaagctctgcag
gatttcccagccccagtcctggtacttgcggtcccttgtgacacggtaca
gatagaataggctttccaccgtctctggccgcagcagttgtgcctgtcag
ctggctagggaaagaggaagaaggctcaggaggatccacccttgctggta
tcacccctgtcaagtccagcccatgcccaggctcaccttgactcacatct
tttattgattctgcccgagggtacatgttggaaatgtgcaattctcaggc
ctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25065740_25066902
seq2: B6Ng01-231B06.b_42_1195

seq1  GAATTCAGGCATCCAGAATCTCCACAGTCCTCTTCCCACAAAAGACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCATCCAGAATCTCCACAGTCCTCTTCCCACAAAAGACCCAC  50

seq1  CCTGCACTTCAAGGGATAAATATTTCCATTTGGCTCAACCAGGGGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTTCAAGGGATAAATATTTCCATTTGGCTCAACCAGGGGAAGTG  100

seq1  TGTGATATAAAGAAGGGGCCCAGAGCTTGCTGGAGGGCAAGTCCATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATAAAGAAGGGGCCCAGAGCTTGCTGGAGGGCAAGTCCATCAAA  150

seq1  CTTTCCCAGAGCTAAGCAACTTCCTGCACTAAACACACAGTCTGAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGAGCTAAGCAACTTCCTGCACTAAACACACAGTCTGAGAGGC  200

seq1  TGGCCCCACAGTTCTCACCTTGGGCAAGTGTTTCATAACACACATCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCACAGTTCTCACCTTGGGCAAGTGTTTCATAACACACATCACCA  250

seq1  CTGGTTGTAGGGATGGCATCTTGACCAAAGAAAAGCTCTTTTCCAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTAGGGATGGCATCTTGACCAAAGAAAAGCTCTTTTCCAGAAGG  300

seq1  TCTTCCAGCTTCTTGTACCTGCACAGATTTGCACAGCTGAGGAAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCTTCTTGTACCTGCACAGATTTGCACAGCTGAGGAAGTGTGT  350

seq1  CTCCACATGCAGAACATACAGAGAAGAGGAATCCCTCAAACACATTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATGCAGAACATACAGAGAAGAGGAATCCCTCAAACACATTCCAT  400

seq1  TCCAGGTTGTATCTACAGGTAGGGCTGTGCAGCCATGGAGACCATCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGTATCTACAGGTAGGGCTGTGCAGCCATGGAGACCATCAATG  450

seq1  CTACTCACAAAGATAAGCAGCTTCCTGGTAGAGACCCACCTCTCCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCACAAAGATAAGCAGCTTCCTGGTAGAGACCCACCTCTCCTCTGC  500

seq1  CTTTCCCTCAGAGGCAATTGCTGACACTCGTTCCAGAAGTTTGTCACGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCAGAGGCAATTGCTGACACTCGTTCCAGAAGTTTGTCACGTA  550

seq1  GTTCATCAAACACTGACTGATGGAACTCCAGCCGCGGTGTCCCGTGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAAACACTGACTGATGGAACTCCAGCCGCGGTGTCCCGTGTAGA  600

seq1  TCCAAGAAGGGCAGGGCCGACTGCAGGGAAGGCAGCAACACGCCATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGGGCAGGGCCGACTGCAGGGAAGGCAGCAACACGCCATTCTC  650

seq1  TGTCTGGAGAAGCAGAGGGTAAACGCGTACGCATTTTGCTTGGCCGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAGAAGCAGAGGGTAAACGCGTACGCATTTTGCTTGGCCGCAGC  700

seq1  CAAGTCAGCACGGACACCACGGATGCCGAGTACTAGGGTCCGCCATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGCACGGACACCACGGATGCCGAGTACTAGGGTCCGCCATAGTA  750

seq1  ACAGCGGAAAAGGGAAAACACTCAGTTACTCAGCGGGTCCCTAGCGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGAAAAGGGAAAACACTCAGTTACTCAGCGGGTCCCTAGCGCAGA  800

seq1  ACCTTTAGCGCCTCCATCCAAGCGTCGGGAGCGCGCCGAATTGTGTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGCGCCTCCATCCAAGCGTCGGGAGCGCGCCGAATTGTGTCCAG  850

seq1  CTTCCCTAGCTGCCCCGGCCCCTTCTGCCCACCTGAAATTGTTCAATGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGCTGCCCCGGCCCCTTCTGCCCACCTGAAATTGTTCAATGGC  900

seq1  CTTGAGAGGCTCGGTGCAGTTGGTCAGGGTCTCTTTCAGGTCCTCGCCAT  950
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CTTGAGAGGCTCGGTGCAGTTGGTCA-GGTCTCTTTCA-GTCCTCGCCAT  948

seq1  TGGCCACGCCCAGGTCCTGGAGCCCCGCGAACATGGCGGAGGCTCCGGCG  1000
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TGGCCACGCCCAGGTCCTGGAGCCCCGCGAACATGGCGGA-GCT-CGGCG  996

seq1  GACGCTCGGCTGTGTACCCCAT-CCCCACCGCGCTCCGCTGGAGCCGTAG  1049
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GACGCTCGGCTGTGTACCCCATCCCCCACCGCGCT-CGCTGGAGCCGTAG  1045

seq1  CGGACCCTGACGGAGCCCCAGAAGCCC-TCTCCACGGTGCCACGAGGACC  1098
      ||||||||||| ||| ||||| ||||| |||||||| |||||||| ||||
seq2  CGGACCCTGAC-GAG-CCCAGGAGCCCTTCTCCACGTTGCCACGA-GACC  1092

seq1  CCCCAAGCCCCGTTCGCCCGCCGCCTCCAGTGTGGCCAGATCGCGTCAGC  1148
      |||  || |||||||||||||||||||  |||||||  ||||||||||||
seq2  CCC--AG-CCCGTTCGCCCGCCGCCTCAGGTGTGGCAGGATCGCGTCAGC  1139

seq1  AGAG-CAGCTCGCACG  1163
       ||| |||||||||||
seq2  -GAGACAGCTCGCACG  1154

seq1: chr2_25204822_25205925
seq2: B6Ng01-231B06.g_67_1171 (reverse)

seq1  CTGAGCCCTGAG-ATTGCACATTT-CAACATGTACCCTCGGGCAG-ATCA  47
      ||||| |||||| ||||||||||| |||||||||||||||||||| ||||
seq2  CTGAGGCCTGAGAATTGCACATTTCCAACATGTACCCTCGGGCAGAATCA  50

seq1  --TAAAGATGTGGAGGTCAAGGTGAGCCTGGGCATGGGCTGGACTTGGAC  95
         |||||||||   ||||||||||||||||||||||||||||||| |||
seq2  ATAAAAGATGTG--AGTCAAGGTGAGCCTGGGCATGGGCTGGACTT-GAC  97

seq1  AGGGGTGATACCAGCAAGGGTGGATCCTCCCTGAGCC-TCTTCCTCTATC  144
      |||||||||||||||||||||||||||| |||||||| ||||||||| ||
seq2  AGGGGTGATACCAGCAAGGGTGGATCCT-CCTGAGCCTTCTTCCTCTTTC  146

seq1  CCTAGCCAGCTGACAGGCACAACCTGCTGCGGCCAGAGACGGTGGAAAGC  194
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTAGCCAGCTGACAGGCACAA-CTGCTGCGGCCAGAGACGGTGGAAAGC  195

seq1  CTATTCTATCTGTACCGTGTCACAAGGGACCGCAAGTACCAGGACTGGGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATCTGTACCGTGTCACAAGGGACCGCAAGTACCAGGACTGGGG  245

seq1  CTGGGAAATCCTGCAGAGCTTCAATAAGTACACACGGGTGAGCTGTTAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATCCTGCAGAGCTTCAATAAGTACACACGGGTGAGCTGTTAGG  295

seq1  TGCCTCTCTGTGGTCTTGGCTGGTGACAGACACAGCTAGGTCCTTGCAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGTGGTCTTGGCTGGTGACAGACACAGCTAGGTCCTTGCAAA  345

seq1  GCTGTAGCTGGACCTACCCTTGAGACTGCTGTGGCACAGACTGAAGAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCTGGACCTACCCTTGAGACTGCTGTGGCACAGACTGAAGAGTC  395

seq1  AGTTTTCTGAGGCCTCCAGTTAGCTGCTCCCTAGTTGTCTGTGACCTTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGAGGCCTCCAGTTAGCTGCTCCCTAGTTGTCTGTGACCTTGA  445

seq1  TAGTGTAGTCATCCTGCTGAGCTTGGTGGTGTCAAGGCCCTGTTGTCTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGTCATCCTGCTGAGCTTGGTGGTGTCAAGGCCCTGTTGTCTTT  495

seq1  ACAGGCTTAGAGATGCCCAGTGTTTCCGGGCTCATTCTCAGGACCCAAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTAGAGATGCCCAGTGTTTCCGGGCTCATTCTCAGGACCCAAGC  545

seq1  TTTTCTGAGAAGGGTCTTTTTTCTCTTGCCCTGTCATACCCTTGGCTTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGAAGGGTCTTTTTTCTCTTGCCCTGTCATACCCTTGGCTTAT  595

seq1  GAAACACTCACAGTGAGCCAGAGTACTGACCTCACACATTACCCCTCCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCACAGTGAGCCAGAGTACTGACCTCACACATTACCCCTCCCC  645

seq1  AACTGGGGTCCATGGCCTACCTTGCCTTCTCTCTTACTGTGACATGGCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGTCCATGGCCTACCTTGCCTTCTCTCTTACTGTGACATGGCCA  695

seq1  GAAAAGGTTATAGAGCTGGATGTGGTCTAAGTGTGACACCTAGCTCTTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTATAGAGCTGGATGTGGTCTAAGTGTGACACCTAGCTCTTTG  745

seq1  CTCCAGACCTCAACAACTCCAGCTTCTTGCCTGTGCCTGCCCTGGGTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACCTCAACAACTCCAGCTTCTTGCCTGTGCCTGCCCTGGGTTGT  795

seq1  GTTTAACAAGCTAGACCCTGGTCATGTCCTGTAGCTGTACCCTTCTTGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACAAGCTAGACCCTGGTCATGTCCTGTAGCTGTACCCTTCTTGGA  845

seq1  GGTATTTTCTGGCCACTTGGGGGTTATTGGCATTTTACAGGGTCCTGTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTCTGGCCACTTGGGGGTTATTGGCATTTTACAGGGTCCTGTGT  895

seq1  AGAACTGTGGTTGACCTTGGACATTACCTGGGTAGTTGCTAGGATGGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGGTTGACCTTGGACATTACCTGGGTAGTTGCTAGGATGGAGC  945

seq1  CTACCCTGGGGCCATATATGTGGGGTTGAACAAGTAGCCTGAGTGACACG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGGGGCCATATATGTGGGGTTGAACAAGTAGCCTGAGTGACACG  995

seq1  TCTAGCTAGAAGTTCTTCACAAGGCTTGGCTCAACCTGTGTCATTGAGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAGAAGTTCTTCACAAGGCTTGGCTCAACCTGTGTCATTGAGGC  1045

seq1  TTTGGCTCTTATGCAGGTCCCCTCAGGTGGCTATTCTTCTATCAACAACG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTTATGCAGGTCCCCTCAGGTGGCTATTCTTCTATCAACAACG  1095

seq1  TCCAGAATTC  1104
      ||||||||||
seq2  TCCAGAATTC  1105