BAC Information

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BAC

Clone NameB6Ng01-231C09
Chromosome2 (Build37)
Map Location 41,314,673 - 41,429,082
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC666531, LOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231C09.bB6Ng01-231C09.g
ACCGA043825GA043826
length1,0351,167
definitionB6Ng01-231C09.b B6Ng01-231C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,314,673 - 41,315,691)(41,427,914 - 41,429,082)
sequence
gaattctagaaaataatcaaagacatatttgaagagccttgagatatgat
ttttgtaaaaaaatatagttaaaaaactgtaaatttatataatcacaaat
ttaatatcatttattccttctacttggacaatcaattgaggaaatgaatt
aaaccaggtgatatggttcttgcctgtaaatgtgactcttagagaggact
gttgtgagtttcagggcagactggataacagaacaagtccaagaagaaca
aaagctaaagaataacagtgtcgaaagaatgagagacagacagacagaca
gatagaagaggcaggagggagggatggaagaaggagggaagagagaagag
ggttgctgaactttctttgcatccatctttacagagagaattattaaatc
ccagaagcacattgcccttgcaattatcagataatcttacagcacacttc
aatttttaatatcgtcaataactaaaatgtcttattattttaggagcaaa
acactaaaaagacagtctttagttacttgggccataaataataaacaatc
aaaacatgatagttattatacaaatattaatattgaactgaagccacaga
tggggttatcacactgcgtgccagaagggttgtattgccatggagagcac
tgtaggggagagaagctctccacaatggtgctaaatactataaaatccta
catattgtcttataaatctcagatcagaagaaaataacctagagtttctt
atcaacttattccattttctgagaagtgcattttaacttttttatataca
taaaatttatggagcatgtttaaagctaaggtagcaaattcatacaagca
atgactttaatttctaaactaagaggataatgaaaaatatctcatacttt
tttctagtagagattgtagaaatggttttatgtagctttctatatatatt
ccatggttatggggacaaaatatgtaaaaacttttccttgaacattaggg
caacccttttctggtgttttacaacatgtgcatca

gaattcccatggtagtaggttcaggttggttatggtttgattgatcttga
cattaagtcattatttcaggatctgccatctagaggttactcgcacacag
gtaggcaattttctgctacttatttgctttgttttgttttgttaataaaa
agcttctaactgtggcctggagacctacatgaatccatatttgctattga
ggcttttagaaactaaaattatttctagatcagaaaacattcatagaagt
ccattcttctcagatcttaccttatctagctagaagcagaaaactatgga
aaatgaggctgtcataaatcctctctctgggttgcttctctcccagtaag
aaactctgaaagtaaaactaacacatttttttttcttccaggagacttgt
atagtcaagaagaaaaatggaaaagatttctgcccatatataaacaaata
tcgctaagaatagactttcaatgagtcacctattacataggatttatatg
aagttatcttttaaggccatcaattccttactagctacctttcagataca
gtgagaagaactaaaacacagtgaactaaaatctgacaaatagttaccaa
catcatcatgatagaaaaacaaagccttgactcagtccatacagtaacgg
ttgcccttttcttcatctggctgtggtttgattgatcctgacctagaacc
attatcttaagatatgtcaagggttttgatggttcactaaggtcactttg
atatggaaatagtttcggttatttctcttaagatgttcatccaatttgtg
atacctttccatgtctttttgtattctgatgtgagagagagaaagggtgt
gggtttgggtatacagagacgagttagaggaaggtaaaatataaccagaa
tattctgtatgaaaaaaatctattttctattaaaaaaaagaggagattga
gtgctgaatgtattttttaaaatccacattactgcgttagccagtgttgc
tgcgaccaagctaccaccccctcctggctctatttttgttccatccagct
agctgaataggagcccattagaactgacctggcttctcttcctacccggc
cttctcaatgatgggcagccattacagcttactccagacttagatctgag
gaaaaggaaacacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41314673_41315691
seq2: B6Ng01-231C09.b_46_1080

seq1  GAATTCTAGAAAATAATCAAAGACATATTTGAAGAGCCTTGAGATATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAATAATCAAAGACATATTTGAAGAGCCTTGAGATATGAT  50

seq1  TTTTGTAAAAAAATATAGTTAAAAAACTGTAAATTTATATAATCACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAAAAATATAGTTAAAAAACTGTAAATTTATATAATCACAAAT  100

seq1  TTAATATCATTTATTCCTTCTACTTGGACAATCAATTGAGGAAATGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCATTTATTCCTTCTACTTGGACAATCAATTGAGGAAATGAATT  150

seq1  AAACCAGGTGATATGGTTCTTGCCTGTAAATGTGACTCTTAGAGAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGTGATATGGTTCTTGCCTGTAAATGTGACTCTTAGAGAGGACT  200

seq1  GTTGTGAGTTTCAGGGCAGACTGGATAACAGAACAAGTCCAAGAAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGTTTCAGGGCAGACTGGATAACAGAACAAGTCCAAGAAGAACA  250

seq1  AAAGCTAAAGAATAACAGTGTCGAAAGAATGAGAGACAGACAGACAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAGAATAACAGTGTCGAAAGAATGAGAGACAGACAGACAGACA  300

seq1  GATAGAAGAGGCAGGAGGGAGGGATGGAAGAAGGAGGGAAGAGAGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGAGGCAGGAGGGAGGGATGGAAGAAGGAGGGAAGAGAGAAGAG  350

seq1  GGTTGCTGAACTTTCTTTGCATCCATCTTTACAGAGAGAATTATTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGAACTTTCTTTGCATCCATCTTTACAGAGAGAATTATTAAATC  400

seq1  CCAGAAGCACATTGCCCTTGCAATTATCAGATAATCTTACAGCACACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCACATTGCCCTTGCAATTATCAGATAATCTTACAGCACACTTC  450

seq1  AATTTTTAATATCGTCAATAACTAAAATGTCTTATTATTTTAGGAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATATCGTCAATAACTAAAATGTCTTATTATTTTAGGAGCAAA  500

seq1  ACACTAAAAAGACAGTCTTTAGTTACTTGGGCCATAAATAATAAACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAAAGACAGTCTTTAGTTACTTGGGCCATAAATAATAAACAATC  550

seq1  AAAACATGATAGTTATTATACAAATATTAATATTGAACTGAAGCCACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATAGTTATTATACAAATATTAATATTGAACTGAAGCCACAGA  600

seq1  TGGGGTTATCACACTGCGTGCCAGAAGGGTTGTATTGCCATGGAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTATCACACTGCGTGCCAGAAGGGTTGTATTGCCATGGAGAGCAC  650

seq1  TGTAGGGGAGAGAAGCTCTCCACAATGGTGCTAAATACTATAAAATCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGAGAGAAGCTCTCCACAATGGTGCTAAATACTATAAAATCCTA  700

seq1  CATATTGTCTTATAAATCTCAGATCAGAAG-AAATAACCTAGAGTTTCTT  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATATTGTCTTATAAATCTCAGATCAGAAGAAAATAACCTAGAGTTTCTT  750

seq1  ATCAACTTATTCCATTTTCTGAGAAGTGCA-TTTAAC-TTTTTATATACA  797
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  ATCAACTTATTCCATTTTCTGAGAAGTGCATTTTAACTTTTTTATATACA  800

seq1  TAAAA-TTATGGAGCATGTTTAAAGCTAAGGTAGCAAA-TCATACAAGCA  845
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAAATTTATGGAGCATGTTTAAAGCTAAGGTAGCAAATTCATACAAGCA  850

seq1  ATGACTTCAATTTCTAAACTAAGAGGATAATGAAAAATATCTCATACTTT  895
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTAATTTCTAAACTAAGAGGATAATGAAAAATATCTCATACTTT  900

seq1  TTTCTAGTAGAGATTGTAGAAAT-GTTTTATGTAGC-TTCTATATATATT  943
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  TTTCTAGTAGAGATTGTAGAAATGGTTTTATGTAGCTTTCTATATATATT  950

seq1  CCATGGTTAT-GGGAC-AAATATGT-AAAACTTT--CCTGAACATTAGGG  988
      |||||||||| ||||| |||||||| ||||||||  | ||||||||||||
seq2  CCATGGTTATGGGGACAAAATATGTAAAAACTTTTCCTTGAACATTAGGG  1000

seq1  CA--CCCTTTCT-GTG-TTCACAACATGTGCATCA  1019
      ||  || ||||| ||| || |||||||||||||||
seq2  CAACCCTTTTCTGGTGTTTTACAACATGTGCATCA  1035


seq1: chr2_41427914_41429082
seq2: B6Ng01-231C09.g_67_1233 (reverse)

seq1  GAGTGTGTTTCCTTTTTCCTCAGATTCTAGGGTCTTGGGAGTAGGCTGGT  50
      |||||||||||| ||||||||||| ||||  ||||  |||||| ||| ||
seq2  GAGTGTGTTTCC-TTTTCCTCAGA-TCTA-AGTCT--GGAGTAAGCT-GT  44

seq1  AAT-GCTGCCAATCATGGAGAAAGGCGGGTAGGAAAGAGAAGCCAGGTCA  99
      ||| |||||| ||||| ||||| | |||||||| ||||||||||||||||
seq2  AATGGCTGCCCATCATTGAGAAGGCCGGGTAGG-AAGAGAAGCCAGGTCA  93

seq1  GTTCTAAT-GGCTCCTATTCAGCTAAGCTGGATGGAAC-AAAATAGAGCC  147
      |||||||| ||||||||||||||| ||||||||||||| |||||||||||
seq2  GTTCTAATGGGCTCCTATTCAGCT-AGCTGGATGGAACAAAAATAGAGCC  142

seq1  AGGAGGGGGTGGTAGCTTGGTCGCAGC-ACACTGGCTAACGCAGTAATGT  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGAGGGGGTGGTAGCTTGGTCGCAGCAACACTGGCTAACGCAGTAATGT  192

seq1  -GATTTT-AAAAATACATTCAGCACTCAATCTCCTCTTTTTTTTAATAGA  244
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAAAAAATACATTCAGCACTCAATCTCCTCTTTTTTTTAATAGA  242

seq1  AAATAGATTTTTTTCATACAGAATATTCTGGTTATATTTTACCTTCCTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTTTTTTCATACAGAATATTCTGGTTATATTTTACCTTCCTCT  292

seq1  AACTCGTCTCTGTATACCCAAACCCACACCCTTTCTCTCTCTCACATCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGTCTCTGTATACCCAAACCCACACCCTTTCTCTCTCTCACATCAG  342

seq1  AATACAAAAAGACATGGAAAGGTATCACAAATTGGATGAACATCTTAAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAAAGACATGGAAAGGTATCACAAATTGGATGAACATCTTAAGA  392

seq1  GAAATAACCGAAACTATTTCCATATCAAAGTGACCTTAGTGAACCATCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACCGAAACTATTTCCATATCAAAGTGACCTTAGTGAACCATCAA  442

seq1  AACCCTTGACATATCTTAAGATAATGGTTCTAGGTCAGGATCAATCAAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGACATATCTTAAGATAATGGTTCTAGGTCAGGATCAATCAAAC  492

seq1  CACAGCCAGATGAAGAAAAGGGCAACCGTTACTGTATGGACTGAGTCAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAGATGAAGAAAAGGGCAACCGTTACTGTATGGACTGAGTCAAG  542

seq1  GCTTTGTTTTTCTATCATGATGATGTTGGTAACTATTTGTCAGATTTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTTCTATCATGATGATGTTGGTAACTATTTGTCAGATTTTAG  592

seq1  TTCACTGTGTTTTAGTTCTTCTCACTGTATCTGAAAGGTAGCTAGTAAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTGTTTTAGTTCTTCTCACTGTATCTGAAAGGTAGCTAGTAAGG  642

seq1  AATTGATGGCCTTAAAAGATAACTTCATATAAATCCTATGTAATAGGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGGCCTTAAAAGATAACTTCATATAAATCCTATGTAATAGGTGA  692

seq1  CTCATTGAAAGTCTATTCTTAGCGATATTTGTTTATATATGGGCAGAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAAAGTCTATTCTTAGCGATATTTGTTTATATATGGGCAGAAAT  742

seq1  CTTTTCCATTTTTCTTCTTGACTATACAAGTCTCCTGGAAGAAAAAAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATTTTTCTTCTTGACTATACAAGTCTCCTGGAAGAAAAAAAAA  792

seq1  TGTGTTAGTTTTACTTTCAGAGTTTCTTACTGGGAGAGAAGCAACCCAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGTTTTACTTTCAGAGTTTCTTACTGGGAGAGAAGCAACCCAGA  842

seq1  GAGAGGATTTATGACAGCCTCATTTTCCATAGTTTTCTGCTTCTAGCTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATTTATGACAGCCTCATTTTCCATAGTTTTCTGCTTCTAGCTAG  892

seq1  ATAAGGTAAGATCTGAGAAGAATGGACTTCTATGAATGTTTTCTGATCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTAAGATCTGAGAAGAATGGACTTCTATGAATGTTTTCTGATCTA  942

seq1  GAAATAATTTTAGTTTCTAAAAGCCTCAATAGCAAATATGGATTCATGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTTAGTTTCTAAAAGCCTCAATAGCAAATATGGATTCATGTA  992

seq1  GGTCTCCAGGCCACAGTTAGAAGCTTTTTATTAACAAAACAAAACAAAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCAGGCCACAGTTAGAAGCTTTTTATTAACAAAACAAAACAAAGC  1042

seq1  AAATAAGTAGCAGAAAATTGCCTACCTGTGTGCGAGTAACCTCTAGATGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAGCAGAAAATTGCCTACCTGTGTGCGAGTAACCTCTAGATGG  1092

seq1  CAGATCCTGAAATAATGACTTAATGTCAAGATCAATCAAACCATAACCAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTGAAATAATGACTTAATGTCAAGATCAATCAAACCATAACCAA  1142

seq1  CCTGAACCTACTACCATGGGAATTC  1169
      |||||||||||||||||||||||||
seq2  CCTGAACCTACTACCATGGGAATTC  1167


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