BAC Information

Click to search

BAC

Clone NameB6Ng01-231K19
Chromosome2 (Build37)
Map Location 24,308,965 - 24,479,306
singlet/doubletdoublet
Overlap genePax8, LOC433410, LOC664938, Cacna1b
Upstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231K19.bB6Ng01-231K19.g
ACCGA044211GA044212
length1,081917
definitionB6Ng01-231K19.b B6Ng01-231K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,478,239 - 24,479,306)(24,308,965 - 24,309,859)
sequence
gaattccttagcctctcacactgccatcggtgctggtctgcagggatgcc
atgctctgggaagcaggcttttcctggtgtgtaacccatgtgacatgtga
ggtcctggtcctgtaattggacgtgcccggtggggctttgccagcattca
taggacaagagcctacctcctattttctgcacccctatgcccccctccat
cacaatgaagatacagaacttgggggcaagatactagggctgtgtgtccc
tcccccaaagaagggtgcttgctttagggaggaagccctgtctagttttc
ttcctatatagaggacattagtattcctggggtgcttcatggccaaccga
gtgttctcagatacctgagacccatatcctccctcagatgttctgagagc
cggagtctcttgcagctgctgagtctacccagaggaatgactcagacaca
tccctgtttcaagatgttttgtctctgaaaaacaagaaaagaaagggagc
tggccactcagagagatgggagcagcttgctctgctcacctgtcttcaag
tgtgtctccctggccccctgtttgtggttaagacctgagttaagcaagaa
catctctcttgaggagtgcctcactgggactggacctcagagaggcctct
tggctgccactccttacccaatgatccagttgcagatagaggacaggtaa
gcaaaaccatagaataggctcacccactatgttctaggctgtcccaggga
gtgacactctgccttctcctcaagccaggatcatatccccttatggcatt
atagtcagtgggcaggactcagactcctgggcctggcttctgctacagcc
tttacttggaattctgctcttctcctagccaggagaatctcagctcagat
tgaagagtgggttccgggaaggagagaatgctggcaaaacttccactcac
ccagcctttctggaccaggcacctgccgggaaccacttcttaggaacgcc
aagccaagctccagagcctaaacactaaatttcttagagtgggaatgacc
gtaacatgcctaggccctgattctgctccta
gaattcttttggatgccttcctctgatctggcctgctctgcttctccata
aacgttaaggcagttgggagaaccaacagcaattctggatcttctatggt
ctgaaactcagccagatcaaatattatctccttataggagtagaaggctt
cgcctagaagcaggggaagatgccctggctgagattagcccagagggtgg
tgtggctgagaagggttagtactatcatttcatctctggtatggaggggg
ggtgacataaatgcagatgcaggagactaatggtggataaaagggtaata
actgaacatgaatcaaaggtgacctgtgttttaccaatattggcctttaa
aagggggaaagagaaggaagaagggaggtgggttgtgctctgtatccacc
ccctttcctgagttagttactgcttaggaattatggctgcaagcaacatc
aagaaacatgcttcttcctgagccaagcagaagcgcatcttttcattaaa
ttggcttcacagcccttgaggtagaaagcacagcacctccattttatata
cagcagggtggggagcagagattgtaaggaattcgcccaaggctgcacat
tacagcagggctcaaactgaccctcaagctggagtctctacatgcaaaca
cctacacaaatactccgcacttttgtgacctctgcccaccccctggcagt
aaggatgggtccatcccaccattttagtcggaccctatctaagagtgacc
atgcccttcaacaccaccttaccaagtgttatgcggcttcccaaacccca
atctaaattatccccaggtttcccatagatccagtgtctatctattgtct
ttcacatatttgaattttctttttagtgagaaaaaaaaaatggcaattct
tttctggtccccaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24478239_24479306
seq2: B6Ng01-231K19.b_47_1127 (reverse)

seq1  TAGGAGCAG-ATCAGGGCC-AAGCATGTTACGGTCACTCCCACCCT-AGA  47
      ||||||||| ||||||||| | |||||||||||||| |||||| || |||
seq2  TAGGAGCAGAATCAGGGCCTAGGCATGTTACGGTCATTCCCACTCTAAGA  50

seq1  A--TTAGTGTTTGGGCTCTGGAGCTTGGCTTGGCG-TCCTGAG-AGTGG-  92
      |  ||||||||| |||||||||||||||||||||| |||| || ||||| 
seq2  AATTTAGTGTTTAGGCTCTGGAGCTTGGCTTGGCGTTCCTAAGAAGTGGT  100

seq1  TCCCGGCAGGTGCCTGGTCCAG-AAGGCTGGGTGGGTGGAAGTTTTGCCA  141
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TCCCGGCAGGTGCCTGGTCCAGAAAGGCTGGGTGAGTGGAAGTTTTGCCA  150

seq1  GCATTCTCTCC-TCCCGGACCCCACTCT--CATCTGAGCTGAGATTCTCC  188
      ||||||||||| ||||||| ||||||||   |||||||||||||||||||
seq2  GCATTCTCTCCTTCCCGGAACCCACTCTTCAATCTGAGCTGAGATTCTCC  200

seq1  TGGCTA-GAGAAGAGCAGAAATCCAAGTAAAGGCTGTAGCAGAAGCCAGG  237
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGCTAGGAGAAGAGCAGAATTCCAAGTAAAGGCTGTAGCAGAAGCCAGG  250

seq1  CCCAGGAGTCTGAGTCCTGCCCACTGACTATAATGCCATAAGGGGATATG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCTGAGTCCTGCCCACTGACTATAATGCCATAAGGGGATATG  300

seq1  ATCCTGGC-TGAGGAAGAAGGCAGAGTGTCACTCCCTGGGACAGCCTAGA  336
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCTTGAGG-AGAAGGCAGAGTGTCACTCCCTGGGACAGCCTAGA  349

seq1  ACATAGTGGGTGAGCCTATTCTATGGTTTTGCTTACCTGTCCTCTATCTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGGGTGAGCCTATTCTATGGTTTTGCTTACCTGTCCTCTATCTG  399

seq1  CAACTGGATCATTGGGTAAGGAGTGGCAGCCAAGAGGCCTCTCTGAGGTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGATCATTGGGTAAGGAGTGGCAGCCAAGAGGCCTCTCTGAGGTC  449

seq1  CAGTCCCAGTGAGGCACTCCTCAAGAGAGATGTTCTTGCTTAACTCAGGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGTGAGGCACTCCTCAAGAGAGATGTTCTTGCTTAACTCAGGT  499

seq1  CTTAACCACAAACAGGGGGCCAGGGAGACACACTTGAAGACAGGTGAGCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCACAAACAGGGGGCCAGGGAGACACACTTGAAGACAGGTGAGCA  549

seq1  GAGCAAGCTGCTCCCATCTCTCTGAGTGGCCAGCTCCCTTTCTTTTCTTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCTGCTCCCATCTCTCTGAGTGGCCAGCTCCCTTTCTTTTCTTG  599

seq1  TTTTTCAGAGACAAAACATCTTGAAACAGGGATGTGTCTGAGTCATTCCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAGACAAAACATCTTGAAACAGGGATGTGTCTGAGTCATTCCT  649

seq1  CTGGGTAGACTCAGCAGCTGCAAGAGACTCCGGCTCTCAGAACATCTGAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGACTCAGCAGCTGCAAGAGACTCCGGCTCTCAGAACATCTGAG  699

seq1  GGAGGATATGGGTCTCAGGTATCTGAGAACACTCGGTTGGCCATGAAGCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATATGGGTCTCAGGTATCTGAGAACACTCGGTTGGCCATGAAGCA  749

seq1  CCCCAGGAATACTAATGTCCTCTATATAGGAAGAAAACTAGACAGGGCTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAATACTAATGTCCTCTATATAGGAAGAAAACTAGACAGGGCTT  799

seq1  CCTCCCTAAAGCAAGCACCCTTCTTTGGGGGAGGGACACACAGCCCTAGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAAAGCAAGCACCCTTCTTTGGGGGAGGGACACACAGCCCTAGT  849

seq1  ATCTTGCCCCCAAGTTCTGTATCTTCATTGTGATGGAGGGGGGCATAGGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCCCCAAGTTCTGTATCTTCATTGTGATGGAGGGGGGCATAGGG  899

seq1  GTGCAGAAAATAGGAGGTAGGCTCTTGTCCTATGAATGCTGGCAAAGCCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAATAGGAGGTAGGCTCTTGTCCTATGAATGCTGGCAAAGCCC  949

seq1  CACCGGGCACGTCCAATTACAGGACCAGGACCTCACATGTCACATGGGTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGCACGTCCAATTACAGGACCAGGACCTCACATGTCACATGGGTT  999

seq1  ACACACCAGGAAAAGCCTGCTTCCCAGAGCATGGCATCCCTGCAGACCAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGGAAAAGCCTGCTTCCCAGAGCATGGCATCCCTGCAGACCAG  1049

seq1  CACCGATGGCAGTGTGAGAGGCTAAGGAATTC  1068
      ||||||||||||||||||||||||||||||||
seq2  CACCGATGGCAGTGTGAGAGGCTAAGGAATTC  1081

seq1: chr2_24308965_24309859
seq2: B6Ng01-231K19.g_69_985

seq1  GAATTCTTTTGGATGCCTTCCTCTGATCTGGCCTGCTCTGCTTCTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGATGCCTTCCTCTGATCTGGCCTGCTCTGCTTCTCCATA  50

seq1  AACGTTAAGGCAGTTGGGAGAACCAACAGCAATTCTGGATCTTCTATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTAAGGCAGTTGGGAGAACCAACAGCAATTCTGGATCTTCTATGGT  100

seq1  CTGAAACTCAGCCAGATCAAATATTATCTCCTTATAGGAGTAGAAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCAGCCAGATCAAATATTATCTCCTTATAGGAGTAGAAGGCTT  150

seq1  CGCCTAGAAGCAGGGGAAGATGCCCTGGCTGAGATTAGCCCAGAGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGAAGCAGGGGAAGATGCCCTGGCTGAGATTAGCCCAGAGGGTGG  200

seq1  TGTGGCTGAGAAGGGTTAGTACTATCATTTCATCTCTGGTATGGAGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGAGAAGGGTTAGTACTATCATTTCATCTCTGGTATGGAGGGGG  250

seq1  GGTGACATAAATGCAGATGCAGGAGACTAATGGTGGATAAAAGGGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATAAATGCAGATGCAGGAGACTAATGGTGGATAAAAGGGTAATA  300

seq1  ACTGAACATGAATCAAAGGTGACCTGTGTTTTACCAATATTGGCCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATGAATCAAAGGTGACCTGTGTTTTACCAATATTGGCCTTTAA  350

seq1  AAGGGGGAAAGAGAAGGAAGAAGGGAGGTGGGTTGTGCTCTGTATCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAAGAGAAGGAAGAAGGGAGGTGGGTTGTGCTCTGTATCCACC  400

seq1  CCCTTTCCTGAGTTAGTTACTGCTTAGGAATTATGGCTGCAAGCAACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTGAGTTAGTTACTGCTTAGGAATTATGGCTGCAAGCAACATC  450

seq1  AAGAAACATGCTTCTTCCTGAGCCAAGCAGAAGCGCATCTTTTCATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATGCTTCTTCCTGAGCCAAGCAGAAGCGCATCTTTTCATTAAA  500

seq1  TTGGCTTCACAGCCCTTGAGGTAGAAAGCACAGCACCTCCATTTTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCACAGCCCTTGAGGTAGAAAGCACAGCACCTCCATTTTATATA  550

seq1  CAGCAGGGTGGGGAGCAGAGATTGTAAGGAATTCGCCCAAGGCTGCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTGGGGAGCAGAGATTGTAAGGAATTCGCCCAAGGCTGCACAT  600

seq1  TACAGCAGGGCTCAAACTGACCCTCAAGCTGGAGTCTCTACATGC-AACA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACAGCAGGGCTCAAACTGACCCTCAAGCTGGAGTCTCTACATGCAAACA  650

seq1  CCTACACAAATACTCCGCAC-TTTGTGACCTCTGCC--ACCCCTGGCAGT  696
      |||||||||||||||||||| |||||||||||||||   |||||||||||
seq2  CCTACACAAATACTCCGCACTTTTGTGACCTCTGCCCACCCCCTGGCAGT  700

seq1  AA-GATGG--TCATCCCAC--ATTTAGTCGGACCCTATCTAAGAGTGACC  741
      || |||||   ||||||||   ||||||||||||||||||||||||||||
seq2  AAGGATGGGTCCATCCCACCATTTTAGTCGGACCCTATCTAAGAGTGACC  750

seq1  ATG-CCTTCAACACCACC-TACCAAGTG-TATGCGGC-TCCCAAA-CCCA  786
      ||| |||||||||||||| ||||||||| |||||||| ||||||| ||||
seq2  ATGCCCTTCAACACCACCTTACCAAGTGTTATGCGGCTTCCCAAACCCCA  800

seq1  ATCTAAAATTATCCCCAGGTTTCCCATAGAT-CAGTGTCTATCTA-TGTC  834
      |||| |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ATCT-AAATTATCCCCAGGTTTCCCATAGATCCAGTGTCTATCTATTGTC  849

seq1  -TTCAC-TATTTG-ATTTTCTTTTTAGTGAGAAAAAAAA---TGCAATTC  878
       ||||| |||||| |||||||||||||||||||||||||    |||||||
seq2  TTTCACATATTTGAATTTTCTTTTTAGTGAGAAAAAAAAAATGGCAATTC  899

seq1  TTTTCT-GTCCCCGACTC  895
      |||||| |||||| ||||
seq2  TTTTCTGGTCCCCAACTC  917