BAC Information

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BAC

Clone NameB6Ng01-232J02
Chromosome2 (Build37)
Map Location 28,584,592 - 28,687,528
singlet/doubletdoublet
Overlap gene1190002A17Rik, LOC665643, Gtf3c4
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik
Downstream geneDdx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232J02.bB6Ng01-232J02.g
ACCGA044870GA044871
length413262
definitionB6Ng01-232J02.b B6Ng01-232J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,687,110 - 28,687,528)(28,584,592 - 28,584,853)
sequence
tgaaagccaaaaaatttagaccaagaagtaatttaaatttgtgaattaag
ctggatatggtagtgcatgcctccaatacataagaggcagaggcaggaag
atctctgagtttgaggctagccagggctacgtagtgagaccctctcaaac
acaaacacacacaaatgtgtaagttatatatgaagaattgaaatgactag
ctcaaattagcagttaagatgccctttgagatttgggtgagttaattaac
caaattactaaatcttgtaaactgccagaagaggtaaagcataaatacat
taaaacctgggaaggacatgagttattaataaaagaagtggcttaagggt
tggtgtatatataccccatgcctataaggcagtatggtgtgtgtgtggcc
ggggggggggggg
taggaaagccagggctacacagagaaaccttgtctcaaaaaaccagagac
caaaccaaaaggaaaaagaaaggggggggggagagaagaagaaaagaaaa
aagaaaagaaaagaaagaaaaagaaaggggggctctaagctgaaaaaccg
actcttgtactagagatcgctgtaattgggctcatgattattccccaatg
cccatcataggaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28687110_28687528
seq2: B6Ng01-232J02.b_46_464 (reverse)

seq1  CCCCCCCCCCCCCGGCCACACACACACCATACTGCCTTATAGGCATGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCGGCCACACACACACCATACTGCCTTATAGGCATGGGG  50

seq1  TATATATACACCAACCCTTAAGCCACTTCTTTTATTAATAACTCATGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACCAACCCTTAAGCCACTTCTTTTATTAATAACTCATGTCC  100

seq1  TTCCCAGGTTTTAATGTATTTATGCTTTACCTCTTCTGGCAGTTTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTTTTAATGTATTTATGCTTTACCTCTTCTGGCAGTTTACAAG  150

seq1  ATTTAGTAATTTGGTTAATTAACTCACCCAAATCTCAAAGGGCATCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAATTTGGTTAATTAACTCACCCAAATCTCAAAGGGCATCTTAA  200

seq1  CTGCTAATTTGAGCTAGTCATTTCAATTCTTCATATATAACTTACACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATTTGAGCTAGTCATTTCAATTCTTCATATATAACTTACACATT  250

seq1  TGTGTGTGTTTGTGTTTGAGAGGGTCTCACTACGTAGCCCTGGCTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTTGTGTTTGAGAGGGTCTCACTACGTAGCCCTGGCTAGCCT  300

seq1  CAAACTCAGAGATCTTCCTGCCTCTGCCTCTTATGTATTGGAGGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAGATCTTCCTGCCTCTGCCTCTTATGTATTGGAGGCATGCA  350

seq1  CTACCATATCCAGCTTAATTCACAAATTTAAATTACTTCTTGGTCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATCCAGCTTAATTCACAAATTTAAATTACTTCTTGGTCTAAAT  400

seq1  TTTTTGGCTTTCAGAATTC  419
      |||||||||||||||||||
seq2  TTTTTGGCTTTCAGAATTC  419

seq1: chr2_28584592_28584853
seq2: B6Ng01-232J02.g_75_336

seq1  TAGGAAAGCCAGGGCTACACAGAGAAACCTTGTCTCAAAAAACCAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGCCAGGGCTACACAGAGAAACCTTGTCTCAAAAAACCAGAGAC  50

seq1  CAAACCAAAAGGAAAAAGAAAGGGGGGGGGGAGAGAAGAAGAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAAGGAAAAAGAAAGGGGGGGGGGAGAGAAGAAGAAAAGAAAA  100

seq1  AAGAAAAGAAAAGAAAGAAAAAGAAAGGGGGGCTCTAAGCTGAAAAACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAGAAAAAGAAAGGGGGGCTCTAAGCTGAAAAACCG  150

seq1  ACTCTTGTACTAGAGATCGCTGTAATTGGGCTCATGATTATTCCCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTACTAGAGATCGCTGTAATTGGGCTCATGATTATTCCCCAATG  200

seq1  CCCATCATAGGAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATAGGAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTG  262
      ||||||||||||
seq2  TGTGTGTGTGTG  262