BAC Information

Click to search

BAC

Clone NameB6Ng01-232K07
Chromosome2 (Build37)
Map Location 153,267,235 - 153,409,888
singlet/doubletdoublet
Overlap gene8430427H17Rik
Upstream gene6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K07.bB6Ng01-232K07.g
ACCGA044926GA044927
length251819
definitionB6Ng01-232K07.b B6Ng01-232K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,409,638 - 153,409,888)(153,267,235 - 153,268,046)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaaa
aaaaaagtcttggtggccttgttcctattacacttgaattcagcagtgac
acattaggaattggggttaaaaggagctccacggaggctcaacacagcgc
ccgcccgcagaacccaccactgattcaggctaagggcgacaggctctact
tcgcctctgctcgcctttatctggggaggatttggggtggtgggaaggcg
g
gaattcagtgccagtgaaggccataaggcctgatctggagccacgggtgt
gggtttcagtccatggtgggggtggaaatgtacaaggatgctcttaggcc
agacaggaaacaggcagcacccccccaattctgcactgcctccaggtttt
tgggcagctggaaagaacaccagtgtggacagttgctccagccctggctc
tcaagctagcattatgtactaggatgtggcttctaggtcatctgtgagcc
cagccaggccagagaaggctcagcccctgagcggcttggggtgagtgtta
cgtatatcactcagagtataccaagaaagtgctgagacacatttgatccc
aacttaactacttcaactcatcaggcacttattaatgaaactgaaaactc
tcagtacccagagcaagcaaaggttcctggcccagttgtgatggtgttac
atgaaagacaggagatctgagtcagctcctgggcacttggagcttccaag
gttgctgtttaaggctgtacccatcaatgtccacctggccaccagaggag
gcttcctgagacacagcccacacaatcccactccttactaacagacctcc
cctgcttactagccataccagcacttcttccagggaaaaggaagggagga
aggcttgcttccattcagccaatcactcaccacacttgagtatttttccc
ccctccattcacactctcacatttgtgcttagcctgttcacattagccat
gtgcacgctcttactgtcccttgccagagtggatgcctggatgctggagt
gagcattttccacaccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153409638_153409888
seq2: B6Ng01-232K07.b_43_293 (reverse)

seq1  CCGCCTTCCCACCACCCCAAATCCTCCCCAGATAAAGGCGAGCAGAGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTCCCACCACCCCAAATCCTCCCCAGATAAAGGCGAGCAGAGGCG  50

seq1  AAGTAGAGCCTGTCGCCCTTAGCCTGAATCAGTGGTGGGTTCTGCGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGCCTGTCGCCCTTAGCCTGAATCAGTGGTGGGTTCTGCGGGCG  100

seq1  GGCGCTGTGTTGAGCCTCCGTGGAGCTCCTTTTAACCCCAATTCCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGTGTTGAGCCTCCGTGGAGCTCCTTTTAACCCCAATTCCTAATG  150

seq1  TGTCACTGCTGAATTCAAGTGTAATAGGAACAAGGCCACCAAGACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGCTGAATTCAAGTGTAATAGGAACAAGGCCACCAAGACTTTTT  200

seq1  TTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATT  250

seq1  C  251
      |
seq2  C  251

seq1: chr2_153267235_153268046
seq2: B6Ng01-232K07.g_69_887

seq1  GAATTCAGTGCCAGTGAAGGCCATAAGGCCTGATCTGGAGCCACGGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCAGTGAAGGCCATAAGGCCTGATCTGGAGCCACGGGTGT  50

seq1  GGGTTTCAGTCCATGGTGGGGGTGGAAATGTACAAGGATGCTCTTAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCAGTCCATGGTGGGGGTGGAAATGTACAAGGATGCTCTTAGGCC  100

seq1  AGACAGGAAACAGGCAGCACCCCCCCAATTCTGCACTGCCTCCAGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAACAGGCAGCACCCCCCCAATTCTGCACTGCCTCCAGGTTTT  150

seq1  TGGGCAGCTGGAAAGAACACCAGTGTGGACAGTTGCTCCAGCCCTGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCTGGAAAGAACACCAGTGTGGACAGTTGCTCCAGCCCTGGCTC  200

seq1  TCAAGCTAGCATTATGTACTAGGATGTGGCTTCTAGGTCATCTGTGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTAGCATTATGTACTAGGATGTGGCTTCTAGGTCATCTGTGAGCC  250

seq1  CAGCCAGGCCAGAGAAGGCTCAGCCCCTGAGCGGCTTGGGGTGAGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCCAGAGAAGGCTCAGCCCCTGAGCGGCTTGGGGTGAGTGTTA  300

seq1  CGTATATCACTCAGAGTATACCAAGAAAGTGCTGAGACACATTTGATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATATCACTCAGAGTATACCAAGAAAGTGCTGAGACACATTTGATCCC  350

seq1  AACTTAACTACTTCAACTCATCAGGCACTTATTAATGAAACTGAAAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTACTTCAACTCATCAGGCACTTATTAATGAAACTGAAAACTC  400

seq1  TCAGTACCCAGAGCAAGCAAAGGTTCCTGGCCCAGTTGTGATGGTGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCAGAGCAAGCAAAGGTTCCTGGCCCAGTTGTGATGGTGTTAC  450

seq1  ATGAAAGACAGGAGATCTGAGTCAGCTCCTGGGCACTTGGAGCTTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGACAGGAGATCTGAGTCAGCTCCTGGGCACTTGGAGCTTCCAAG  500

seq1  GTTGCTGTTTAAGGCTGTACCCATCAATGTCCACCTGGCCACCAGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTAAGGCTGTACCCATCAATGTCCACCTGGCCACCAGAGGAG  550

seq1  GCTTCCTGAGACACAGCCCACACAATCCCACTCCTTACTAACAGACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGAGACACAGCCCACACAATCCCACTCCTTACTAACAGACCTCC  600

seq1  CCTGCTTACTAGCCATACCAGCAC-TCTTCCAGGGAAAAGGAAGGGAGGA  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGCTTACTAGCCATACCAGCACTTCTTCCAGGGAAAAGGAAGGGAGGA  650

seq1  AGGCTTGCTTCCATTCAGCCAATCACTCACCACACTTGAGTATTTT--CC  697
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AGGCTTGCTTCCATTCAGCCAATCACTCACCACACTTGAGTATTTTTCCC  700

seq1  CCCTCCATTCACACTCTCACA-TTGTGCTTAGCCTGTTCACA-TAGCCAT  745
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  CCCTCCATTCACACTCTCACATTTGTGCTTAGCCTGTTCACATTAGCCAT  750

seq1  GTGCACGCTC-TACTGT-CCTTGCCAGAGTGGATGCCTGGATGCTGGAGT  793
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GTGCACGCTCTTACTGTCCCTTGCCAGAGTGGATGCCTGGATGCTGGAGT  800

seq1  GAGCATTTTCCACACCTTC  812
      |||||||||||||||||||
seq2  GAGCATTTTCCACACCTTC  819