BAC Information

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BAC

Clone NameB6Ng01-232K09
Chromosome2 (Build37)
Map Location 139,690,495 - 139,876,639
singlet/doubletdoublet
Overlap geneTasp1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneLOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K09.bB6Ng01-232K09.g
ACCGA044930GA044931
length1,0661,029
definitionB6Ng01-232K09.b B6Ng01-232K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,690,495 - 139,691,551)(139,875,634 - 139,876,639)
sequence
gaattcactcctagtcactcccattctcagggtgtaatagtggggtgatg
ggcgagcaactaatcaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggtttgggatcttcct
gagaagcaagcaataaagctcttgccacggaagattctggtttgttgcgt
ctttcttgccggtggagtgggacacaatatttttatatattaaaaaataa
tcaggccgggcggtggtggcacacatctttaatcccagcacttgggaggt
agagacaggtggatttctgagttcgaggccagcctggtctacagagcgag
ttccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaat
caatcaatcaatcaatcaataatcagaatcaacaaaacaacaatctagct
gacaacattcccaaattacttttgcattccaattttttaaaatgccaatg
taataagtttgtaaaaaaaaaaaaactagaaaacatgtttatctcaaaga
taaaactcagcctgcatgtaagctgtaaaaagaaaatatattgagagctg
caggagaggaatactttaccacatatgaaggcagccatgaagtaatagct
agttttcccaacagaaactagaaaagccagagggccgtgaaatgattctg
aaaaacaatagatttgcaaacctagaccaaaatattcagcaaaactatcc
ataattgaaagataaagaaaatctgtgtcaaaagcaagccaaaggaattt
tggccagctgtttagaaaacccatataggaaggaaggaattgaatgcagc
taagagtaacaaatacatcaaacaggcatgggggctaggggagaggctag
aaagtttaagcaaataaataggaaatcaccaaacacctacaaataaaata
aggaccggaaaagtataatcattatttcattaatatactggaattaggca
tgggcctcaattccaaaccaaaagaacattgggctaacagatataaaaac
aaaacattaaaacagg
gaattcaagattgatttttatgtcccagaactgaggtgtgaggtatcttc
agcaattaggtattaccagctagttacggtgggcgtgcttctggggccat
ctggccagtaactcattggggggtaacttgtgtatgatacagctatttca
tttaataactcatcttttgagagtagccttactcactcatgttggcgggg
gggactgtcattcaaacttgttttttaaagaaaaaattaaatgtatttta
attagcttacaaaatgatggggtttcatgatgcttcttcatgcattctta
cttttggttaacctaccccctgcactcccatcccctcttcaacctttagc
tcctgttctccccctccctttttcatatcttgtgttctcttggggtatca
gtatttgagttgtaagatcatagattcctgtgcagcttcttcatgtgctc
ttcatttttattagctcttctcatgcctccttgttttcctgcccacttta
ccccactatctgcttgacactgctctgcactcagtattctacctttgaat
tttcatttcacctgtattttgatatcccttctccctgagtgacttctcca
gggtaaagacacaaagtaaaagatttggagccatgtatgagagagaacat
acaatatttgtctttttgagcccggtgacctccctcagattaatttttcc
agttccatccatttgcctgaaaaatttcatgattttattcttatttacag
ctaggtaatattcccatcgtaccacatttttattatccacttgccagctg
gttgggtatctaggttgattccatttccctatgaaatagagtgtcagtga
aatatgggatatgcaagttgttgtcctgtaataagatattaatgcatggt
cctaaaataacatataaaagtcctttgggtattgtgtaatctagaaaatg
gttaattggggtcatatgggctctggtttctaatcccttggattttttat
tttcctctggttttaaaagaactatggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139690495_139691551
seq2: B6Ng01-232K09.b_41_1106

seq1  GAATTCACTCCTAGTCACTCCCATTCTCAGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCAGGGTGTAATAGTGGGGTGATG  50

seq1  GGCGAGCAACTAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCAACTAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTCTTGCCACGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTCTTGCCACGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTGGAGTGGGACACAATATTTTTATATATTAAAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTGGAGTGGGACACAATATTTTTATATATTAAAAAATAA  250

seq1  TCAGGCCGGGCGGTGGTGGCACACATCTTTAATCCCAGCACTTGGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCGGGCGGTGGTGGCACACATCTTTAATCCCAGCACTTGGGAGGT  300

seq1  AGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAG  350

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAT  400

seq1  CAATCAATCAATCAATCAATAATCAGAATCAACAAAACAACAATCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATCAATCAATCAATAATCAGAATCAACAAAACAACAATCTAGCT  450

seq1  GACAACATTCCCAAATTACTTTTGCATTCCAATTTTTTAAAATGCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATTCCCAAATTACTTTTGCATTCCAATTTTTTAAAATGCCAATG  500

seq1  TAATAAGTTTGTAAAAAAAAAAAAACTAGAAAACATGTTTATCTCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTTTGTAAAAAAAAAAAAACTAGAAAACATGTTTATCTCAAAGA  550

seq1  TAAAACTCAGCCTGCATGTAAGCTGTAAAAAGAAAATATATTGAGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAGCCTGCATGTAAGCTGTAAAAAGAAAATATATTGAGAGCTG  600

seq1  CAGGAGAGGAATACTTTACCACATATGAAGGCAGCCATGAAGTAATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGAATACTTTACCACATATGAAGGCAGCCATGAAGTAATAGCT  650

seq1  AGTTTTCCCAACAGAAACTAGAAAAGCCAGAGGGCCGTGAAATGATTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCCAACAGAAACTAGAAAAGCCAGAGGGCCGTGAAATGATTCTG  700

seq1  AAAAACAATAGATTTGCAAACCTAGACCAAAATATTCAGCAAAACTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATAGATTTGCAAACCTAGACCAAAATATTCAGCAAAACTATCC  750

seq1  ATAATTGAAAGATAAAGAAAATCTGTGTCAAAAGCAAGCCAAAGGAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGAAAGATAAAGAAAATCTGTGTCAAAAGCAAGCCAAAGGAATTT  800

seq1  TGGCCAGCTGTTTAGAAAACCCATATAGGAAGGAAGGAATTGAATGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCTGTTTAGAAAACCCATATAGGAAGGAAGGAATTGAATGCAGC  850

seq1  TAAGAGTAACAAATACATCAAACAGGCAATGGGGCTAGGGGAGAGGCTAG  900
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TAAGAGTAACAAATACATCAAACAGGCATGGGGGCTAGGGGAGAGGCTAG  900

seq1  AAAG-TTAAGCAAATAAATAGGAAAACACCAAACA-CTACAAAATAAAAA  948
      |||| |||||||||||||||||||| ||||||||| |||||||  ||| |
seq2  AAAGTTTAAGCAAATAAATAGGAAATCACCAAACACCTACAAATAAAATA  950

seq1  AAGA-CAGAAAAGTATAAACA-TATTTCATTAATATACT-GAAT--AGCA  993
      | || | ||||||||||| || ||||||||||||||||| ||||   |||
seq2  AGGACCGGAAAAGTATAATCATTATTTCATTAATATACTGGAATTAGGCA  1000

seq1  ATGGTCTCAATTCCAAAACAAAAG-ACATT-GGCTAACAGATATTAAAAA  1041
        || |||||||||||| |||||| ||||| ||||||||||||| |||| 
seq2  TGGGCCTCAATTCCAAACCAAAAGAACATTGGGCTAACAGATATAAAAAC  1050

seq1  CAAACAATAAAACAGG  1057
       ||||| |||||||||
seq2  AAAACATTAAAACAGG  1066

seq1: chr2_139875634_139876639
seq2: B6Ng01-232K09.g_70_1097 (reverse)

seq1  ACCAAAGTTC-TCTAAAAACAGAGGAAAAATAAAAATC--AAGGATTAGA  47
      |||| ||||| | ||||| ||||||||||  |||||||  | ||||||||
seq2  ACCATAGTTCTTTTAAAACCAGAGGAAAATAAAAAATCCAAGGGATTAGA  50

seq1  AAACAGA-ACCATATGACCCAACTAAACCA-TTTCTAGA-TACAC-ATAC  93
      || ||||  ||||||||||| | | ||||| |||||||| ||||| ||||
seq2  AACCAGAGCCCATATGACCCCAATTAACCATTTTCTAGATTACACAATAC  100

seq1  CCAAAGGAC-TTTATATG-TATTATAAGA-CATGCATT-ATATCTTATTA  139
      ||||||||| |||||||| |||| || || |||||||| |||||||||||
seq2  CCAAAGGACTTTTATATGTTATTTTAGGACCATGCATTAATATCTTATTA  150

seq1  CA-GACA--CACTTGCATAT-CCATA-TTCACTGACACTCTA-TTCATA-  182
      || ||||   |||||||||| ||||| ||||||||||||||| |||||| 
seq2  CAGGACAACAACTTGCATATCCCATATTTCACTGACACTCTATTTCATAG  200

seq1  GGAAATGGAATCAACCTAGATA-CCAAACAGCTGGCAAGTGGATAAT-AA  230
      |||||||||||||||||||||| |||| ||||||||||||||||||| ||
seq2  GGAAATGGAATCAACCTAGATACCCAACCAGCTGGCAAGTGGATAATAAA  250

seq1  AATGTGGTACGAT-GGAATATTACCTAGCTGTAAATAAGAATAAAATCAT  279
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTACGATGGGAATATTACCTAGCTGTAAATAAGAATAAAATCAT  300

seq1  GAAA-TTTTCAGGCAAATGGATGGAACTGGAAAAATTAATCTGAGGGAGG  328
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTCAGGCAAATGGATGGAACTGGAAAAATTAATCTGAGGGAGG  350

seq1  TCACCGGGCTCAAAAAGACAAATATTGTATGTTCTCTCTCATACATGGCT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGGCTCAAAAAGACAAATATTGTATGTTCTCTCTCATACATGGCT  400

seq1  CCAAATCTTTTACTTTGTGTCTTTACCCTGGAGAAGTCACTCAGGGAGAA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTTTACTTTGTGTCTTTACCCTGGAGAAGTCACTCAGGGAGAA  450

seq1  GGGATATCAAAATACAGGTGAAATGAAAATTCAAAGGTAGAATACTGAGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATCAAAATACAGGTGAAATGAAAATTCAAAGGTAGAATACTGAGT  500

seq1  GCAGAGCAGTGTCAAGCAGATAGTGGGGTAAAGTGGGCAGGAAAACAAGG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGTGTCAAGCAGATAGTGGGGTAAAGTGGGCAGGAAAACAAGG  550

seq1  AGGCATGAGAAGAGCTAATAAAAATGAAGAGCACATGAAGAAGCTGCACA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAGAAGAGCTAATAAAAATGAAGAGCACATGAAGAAGCTGCACA  600

seq1  GGAATCTATGATCTTACAACTCAAATACTGATACCCCAAGAGAACACAAG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTATGATCTTACAACTCAAATACTGATACCCCAAGAGAACACAAG  650

seq1  ATATGAAAAAGGGAGGGGGAGAACAGGAGCTAAAGGTTGAAGAGGGGATG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAAGGGAGGGGGAGAACAGGAGCTAAAGGTTGAAGAGGGGATG  700

seq1  GGAGTGCAGGGGGTAGGTTAACCAAAAGTAAGAATGCATGAAGAAGCATC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCAGGGGGTAGGTTAACCAAAAGTAAGAATGCATGAAGAAGCATC  750

seq1  ATGAAACCCCATCATTTTGTAAGCTAATTAAAATACATTTAATTTTTTCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCCCATCATTTTGTAAGCTAATTAAAATACATTTAATTTTTTCT  800

seq1  TTAAAAAACAAGTTTGAATGACAGTCCCCCCCGCCAACATGAGTGAGTAA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACAAGTTTGAATGACAGTCCCCCCCGCCAACATGAGTGAGTAA  850

seq1  GGCTACTCTCAAAAGATGAGTTATTAAATGAAATAGCTGTATCATACACA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTCTCAAAAGATGAGTTATTAAATGAAATAGCTGTATCATACACA  900

seq1  AGTTACCCCCCAATGAGTTACTGGCCAGATGGCCCCAGAAGCACGCCCAC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCCCCAATGAGTTACTGGCCAGATGGCCCCAGAAGCACGCCCAC  950

seq1  CGTAACTAGCTGGTAATACCTAATTGCTGAAGATACCTCACACCTCAGTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTAGCTGGTAATACCTAATTGCTGAAGATACCTCACACCTCAGTT  1000

seq1  CTGGGACATAAAAATCAATCTTGAATTC  1006
      ||||||||||||||||||||||||||||
seq2  CTGGGACATAAAAATCAATCTTGAATTC  1028