BAC Information

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BAC

Clone NameB6Ng01-232K12
Chromosome2 (Build37)
Map Location 109,338,162 - 109,518,101
singlet/doubletdoublet
Overlap geneBdnf
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneLOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K12.bB6Ng01-232K12.g
ACCGA044936GA044937
length239450
definitionB6Ng01-232K12.b B6Ng01-232K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,517,863 - 109,518,101)(109,338,162 - 109,338,616)
sequence
atcatttccacctgcgcagagttgggatgctttcgttcattaaaataatc
ttgagtcttgagttttggaaatctttccttttccccccaataacgcccct
cacccgcatcccaagccttatccggggaggggtcccaaggcaccaagcct
tactccgaaagctgcggcagggcaaagctcctggcctgaacaaagggcgg
tggaagcggtgggaatggggggttgtaagagtgtggaga
cacccaccccatcaagacactcttcaagtgcttcctctcaaatgaggtta
ctccgtgacccatctctgatgtcttacagggtcagtgcacacacatctca
tgtagtctgtttcccatgctgcctcaggttctttaagagtcttggtcctt
ggtattttcagtttttggtttttgtctttttttttttttttttttttagg
taaaaatgaactcggtatgtttaatgaagcttggcattaccaaaaccgcg
tacaaacagcaagtcccacacgagaagtcccttttgttttttgtttgttt
gtgtgtgtgtgtgtgtgtgtttgtgtttgtttttatacaaaaaattcctt
gggcaaacctccgccaggctcatgccaagagaaaacccaggccggcctgg
gatctggaaaaggttaggttgggcttttggatctgggagttgggaacgtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_109517863_109518101
seq2: B6Ng01-232K12.b_48_286 (reverse)

seq1  TCTCCACACTCTTACAACCCCCCATTCCCACCGCTTCCACCGCCCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACACTCTTACAACCCCCCATTCCCACCGCTTCCACCGCCCTTTGT  50

seq1  TCAGGCCAGGAGCTTTGCCCTGCCGCAGCTTTCGGAGTAAGGCTTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGGAGCTTTGCCCTGCCGCAGCTTTCGGAGTAAGGCTTGGTGC  100

seq1  CTTGGGACCCCTCCCCGGATAAGGCTTGGGATGCGGGTGAGGGGCGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCCCTCCCCGGATAAGGCTTGGGATGCGGGTGAGGGGCGTTAT  150

seq1  TGGGGGGAAAAGGAAAGATTTCCAAAACTCAAGACTCAAGATTATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAAAAGGAAAGATTTCCAAAACTCAAGACTCAAGATTATTTTAA  200

seq1  TGAACGAAAGCATCCCAACTCTGCGCAGGTGGAAATGAT  239
      |||||||||||||||||||||||||||||||||||||||
seq2  TGAACGAAAGCATCCCAACTCTGCGCAGGTGGAAATGAT  239

seq1: chr2_109338162_109338616
seq2: B6Ng01-232K12.g_70_524

seq1  GAATTCCACCCACCCCATCAAGACACTCTTCAAGTGCTTCCTCTCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACCCCATCAAGACACTCTTCAAGTGCTTCCTCTCAAATG  50

seq1  AGGTTACTCCGTGACCCATCTCTGATGTCTTACAGGGTCAGTGCACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTCCGTGACCCATCTCTGATGTCTTACAGGGTCAGTGCACACAC  100

seq1  ATCTCATGTAGTCTGTTTCCCATGCTGCCTCAGGTTCTTTAAGAGTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGTAGTCTGTTTCCCATGCTGCCTCAGGTTCTTTAAGAGTCTTG  150

seq1  GTCCTTGGTATTTTCAGTTTTTGGTTTTTGTCTTTTTTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGTATTTTCAGTTTTTGGTTTTTGTCTTTTTTTTTTTTTTTTTT  200

seq1  TTTAGGTAAAAATGAACTCGGTATGTTTAATGAAGCTTGGCATTACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAAAAATGAACTCGGTATGTTTAATGAAGCTTGGCATTACCAAA  250

seq1  ACCGCGTACAAACAGCAAGTCCCACACGAGAAGTCCCTTTTGTTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGTACAAACAGCAAGTCCCACACGAGAAGTCCCTTTTGTTTTTTGT  300

seq1  TTGTTTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGTTTTTATACAAAATA  350
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGTTTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGTTTTTATACAAAAAA  350

seq1  TTCCTTGGGCAAACCTCCGCCAGGCTCATGCCAAGAGAAAACCCAGGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGCAAACCTCCGCCAGGCTCATGCCAAGAGAAAACCCAGGCCG  400

seq1  GCCTGGGATCTGGAGAAGGTAAGGTTGGGCTTTTGGATCTGGGAGTTGGG  450
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  GCCTGGGATCTGGAAAAGGTTAGGTTGGGCTTTTGGATCTGGGAGTTGGG  450

seq1  AACGT  455
      |||||
seq2  AACGT  455