BAC Information

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BAC

Clone NameB6Ng01-233C21
Chromosome2 (Build37)
Map Location 37,455,792 - 37,640,506
singlet/doubletdoublet
Overlap geneStrbp, LOC639491
Upstream geneOlfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik
Downstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233C21.bB6Ng01-233C21.g
ACCGA045316GA045317
length1,1761,124
definitionB6Ng01-233C21.b B6Ng01-233C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,639,326 - 37,640,506)(37,455,792 - 37,456,903)
sequence
gaattcccatgcctctggggaaacccagagtacatgttggccctcccctg
gataggggtagagacagagggagatggagaatctccaggtgtggggattt
atgaggcaggtcctgtcagtgtaggcgtccacagcctttcccctgccacc
taagtaggttttgtcatgggggctcaggagccagctgaccccagctggag
ccctccctacttccctgtccagccagccccaggactcctccttcccatga
ccctcctgccccactcctatcctctgtgccagggagagccaggcccaggc
ggcctggaatcccaactcccccaccctgctgggagcaggagggaaatgag
tcacgcaaagctgcctgctcacatcacattcggaggactgctgcatagac
agtgctcacttgcctgctgacagacacacagacaattcccacagaagcat
acaccgattatgacacaagcaaggactcagagcacccttagagcaaccat
atatatgcaaatggctgggacaagaagtctcacctgcacagatattcaga
taccaagagggcaaagatgcagagaccggtgtcttaaccaactctcatcc
cacggtgccatctcatccctccatgtccttcctgaacttgccccccagtc
tgtatcatttgctcagagggaacttgaaactgcctcacggtttgagagca
atgcctgaattcagggttggtggagatcccagtgtctatactgcagattc
cagactgcactaaattaaacatcctttgaagatctgtccccagctgtccc
ctccctcctgacatgaggcagctctagaaagcagatgtgaggagtaggaa
gtgaccggggtgaggtgtcccctggaagagagagacatgtgtgtccatgc
cggtcgtgcttctgagcatgtgtgtctacatcattcctcctctggggaac
aaggatggcgagggactcattccccatcacaaacagggaaagattcccag
tggctagatcagatgcccagagactgaggtccaaattacatcctgagcct
tgccagggcccatcaggtgagccatacaggaatacaccggcagccttgac
catgttctagacctgagatgcctagagattaccccttgggccatcctcga
aagctaacaggcaagtgtgccctgca
gaattcagtaaaagaagatcaagatgaaaagctacatgaaaatgattgtc
tttataaatatattcagaaataaatctaacacaattaaggtcgaacatcc
aaatgtggcaatgctcctataatcccagcatttggaaggtggaagcagga
gggttactagttcaatgtcaacctccaccacacagggaattggaggaggc
cagcctgaaaaactagaagctcaatctcaaaaacaaaacaaaacaaaaca
aaacaaaaaagtaatcagagagttccaactgtgactcagtggtgtagtgt
ttgcctaatgtgcacaagatctagggtttgataccaagcaccatccaaag
aaataaggcagaaaattagtaatatatgcctctatgtgaaagagcttatt
ttttccacatctctaaggttttccatagcactcacactactttattctca
agaagaaaaatttacaagtatacctctaaggtactggaggtctcagttgt
agaatttccagtattattgcttgagtttgaagatactgtatcatttttgc
tttcattatctgatttttcatcggaactgatacattcaatatctgcatca
aaacctgttgggtatcccattgcctgtaaaacctgtacaaattccattaa
aacatttttattgggttaccaaatatgaaaaaggatagctgaaattctga
gataaaaagtttcagaatctgtaacagtttactaaaacccctatgaagaa
caagaatggtgctacaaatgtaaaagcttggttttagtccagtccacact
tcaaggtagcactacatgaaaatgggaacacatactcagagtacctagcc
taagactttaagaaatacaagcctaaaggtactgctacttcatttaatct
ggaggtgaatgaaagagaacgtacagctacagtcaagctcatccaacgaa
aaatagcacctgaaaaaaaaaaaattaaactagaaagaaagacttgaaag
cctattactattcacttcgcctttggttctcaattttttgcaactggaaa
aagatgaagattagatcagccttgaatctcttaaatctattgaccacaac
catggagaaatattaggccaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37639326_37640506
seq2: B6Ng01-233C21.b_45_1220 (reverse)

seq1  TGCAGGGCACACCTGCCTGGTTTGGCTTTCTGGAGGAT-GCCCAGAGGGT  49
      |||||||||||| ||||||  || ||||||  |||||| |||||  ||||
seq2  TGCAGGGCACACTTGCCTG--TTAGCTTTC--GAGGATGGCCCAAGGGGT  46

seq1  TATCTCTA-GCATTCCTTCAGTCTAG-ACATGTGTCAA-GCTGCC-GTGT  95
       ||||||| ||||  ||   |||||| ||||| ||||| |||||| ||||
seq2  AATCTCTAGGCAT--CTCAGGTCTAGAACATG-GTCAAGGCTGCCGGTGT  93

seq1  ATTCCCTGTATGGCTCACCTGATGGGCCCTGGCAAGGCTCAGGATGTAAT  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATT-CCTGTATGGCTCACCTGATGGGCCCTGGCAAGGCTCAGGATGTAAT  142

seq1  TTGGACCTCAGTCCTCTGGGCATCCTGAATTCTAGCCCACTGGGATTCTT  195
      |||||||||||| |||||||||| ||||  ||||| ||||||||| ||||
seq2  TTGGACCTCAGT-CTCTGGGCAT-CTGA--TCTAG-CCACTGGGAATCTT  187

seq1  T-CCTGTTTGTGATGGGGAATGAGTCCCTCGCCATCCTTGTTCCCAAGA-  243
      | ||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  TCCCTGTTTGTGATGGGGAATGAGTCCCTCGCCATCCTTGTTCCCCAGAG  237

seq1  GAGGAATGATGTAGACACACATGCTCAGAAGCACGACCGGCATGGACACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGATGTAGACACACATGCTCAGAAGCACGACCGGCATGGACACA  287

seq1  CATGTCTCTCTCTTCCAGGGGACACCTCACCCCGGTCACTTCCTACTCCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCTCTCTTCCAGGGGACACCTCACCCCGGTCACTTCCTACTCCT  337

seq1  -ACATCTGCTTTCTAGAGCTGCCTCATGTCAGGAGGGAGGGGACAGCTGG  392
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGCTTTCTAGAGCTGCCTCATGTCAGGAGGGAGGGGACAGCTGG  387

seq1  GGACAGATCTTCAAAGGATGTTTAATTTAGTGCAGTCTGGAATCTGCAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATCTTCAAAGGATGTTTAATTTAGTGCAGTCTGGAATCTGCAGT  437

seq1  ATAGACACTGGGATCTCCACCAACCCTGAATTCAGGCATTGCTCTCAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACTGGGATCTCCACCAACCCTGAATTCAGGCATTGCTCTCAAAC  487

seq1  CGTGAGGCAGTTTCAAGTTCCCTCTGAGCAAATGATACAGACTGGGGGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGCAGTTTCAAGTTCCCTCTGAGCAAATGATACAGACTGGGGGGC  537

seq1  AAGTTCAGGAAGGACATGGAGGGATGAGATGGCACCGTGGGATGAGAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGGAAGGACATGGAGGGATGAGATGGCACCGTGGGATGAGAGTT  587

seq1  GGTTAAGACACCGGTCTCTGCATCTTTGCCCTCTTGGTATCTGAATATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGACACCGGTCTCTGCATCTTTGCCCTCTTGGTATCTGAATATCT  637

seq1  GTGCAGGTGAGACTTCTTGTCCCAGCCATTTGCATATATATGGTTGCTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTGAGACTTCTTGTCCCAGCCATTTGCATATATATGGTTGCTCT  687

seq1  AAGGGTGCTCTGAGTCCTTGCTTGTGTCATAATCGGTGTATGCTTCTGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCTCTGAGTCCTTGCTTGTGTCATAATCGGTGTATGCTTCTGTG  737

seq1  GGAATTGTCTGTGTGTCTGTCAGCAGGCAAGTGAGCACTGTCTATGCAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTCTGTGTGTCTGTCAGCAGGCAAGTGAGCACTGTCTATGCAGC  787

seq1  AGTCCTCCGAATGTGATGTGAGCAGGCAGCTTTGCGTGACTCATTTCCCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCGAATGTGATGTGAGCAGGCAGCTTTGCGTGACTCATTTCCCT  837

seq1  CCTGCTCCCAGCAGGGTGGGGGAGTTGGGATTCCAGGCCGCCTGGGCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCAGCAGGGTGGGGGAGTTGGGATTCCAGGCCGCCTGGGCCTG  887

seq1  GCTCTCCCTGGCACAGAGGATAGGAGTGGGGCAGGAGGGTCATGGGAAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTGGCACAGAGGATAGGAGTGGGGCAGGAGGGTCATGGGAAGG  937

seq1  AGGAGTCCTGGGGCTGGCTGGACAGGGAAGTAGGGAGGGCTCCAGCTGGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCCTGGGGCTGGCTGGACAGGGAAGTAGGGAGGGCTCCAGCTGGG  987

seq1  GTCAGCTGGCTCCTGAGCCCCCATGACAAAACCTACTTAGGTGGCAGGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGGCTCCTGAGCCCCCATGACAAAACCTACTTAGGTGGCAGGGG  1037

seq1  AAAGGCTGTGGACGCCTACACTGACAGGACCTGCCTCATAAATCCCCACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTGGACGCCTACACTGACAGGACCTGCCTCATAAATCCCCACA  1087

seq1  CCTGGAGATTCTCCATCTCCCTCTGTCTCTACCCCTATCCAGGGGAGGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGATTCTCCATCTCCCTCTGTCTCTACCCCTATCCAGGGGAGGGC  1137

seq1  CAACATGTACTCTGGGTTTCCCCAGAGGCATGGGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTACTCTGGGTTTCCCCAGAGGCATGGGAATTC  1176

seq1: chr2_37455792_37456903
seq2: B6Ng01-233C21.g_66_1189

seq1  GAATTCAGTAAAAGAAGATCAAGATGAAAAGCTACATGAAAATGATTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAGAAGATCAAGATGAAAAGCTACATGAAAATGATTGTC  50

seq1  TTTATAAATATATTCAGAAATAAATCTAACACAATTAAGGTCGAACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATATATTCAGAAATAAATCTAACACAATTAAGGTCGAACATCC  100

seq1  AAATGTGGCAATGCTCCTATAATCCCAGCATTTGGAAGGTGGAAGCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGCAATGCTCCTATAATCCCAGCATTTGGAAGGTGGAAGCAGGA  150

seq1  GGGTTACTAGTTCAATGTCAACCTCCACCACACAGGGAATTGGAGGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTAGTTCAATGTCAACCTCCACCACACAGGGAATTGGAGGAGGC  200

seq1  CAGCCTGAAAAACTAGAAGCTCAATCTCAAAAACAAAACAAAACAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAAAACTAGAAGCTCAATCTCAAAAACAAAACAAAACAAAACA  250

seq1  AAACAAAAAAGTAATCAGAGAGTTCCAACTGTGACTCAGTGGTGTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGTAATCAGAGAGTTCCAACTGTGACTCAGTGGTGTAGTGT  300

seq1  TTGCCTAATGTGCACAAGATCTAGGGTTTGATACCAAGCACCATCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAATGTGCACAAGATCTAGGGTTTGATACCAAGCACCATCCAAAG  350

seq1  AAATAAGGCAGAAAATTAGTAATATATGCCTCTATGTGAAAGAGCTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGCAGAAAATTAGTAATATATGCCTCTATGTGAAAGAGCTTATT  400

seq1  TTTTCCACATCTCTAAGGTTTTCCATAGCACTCACACTACTTTATTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATCTCTAAGGTTTTCCATAGCACTCACACTACTTTATTCTCA  450

seq1  AGAAGAAAAATTTACAAGTATACCTCTAAGGTACTGGAGGTCTCAGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAATTTACAAGTATACCTCTAAGGTACTGGAGGTCTCAGTTGT  500

seq1  AGAATTTCCAGTATTATTGCTTGAGTTTGAAGATACTGTATCATTTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCCAGTATTATTGCTTGAGTTTGAAGATACTGTATCATTTTTGC  550

seq1  TTTCATTATCTGATTTTTCATCGGAACTGATACATTCAATATCTGCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATCTGATTTTTCATCGGAACTGATACATTCAATATCTGCATCA  600

seq1  AAACCTGTTGGGTATCCCATTGCCTGTAAAACCTGTACAAATTCCATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTGGGTATCCCATTGCCTGTAAAACCTGTACAAATTCCATTAA  650

seq1  AACATTTTTATTGGGTTACCAAATATGAAAAAGGATAGCTGAAATTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTATTGGGTTACCAAATATGAAAAAGGATAGCTGAAATTCTGA  700

seq1  GATAAAAAGTTTCAGAATCTGTAACAGTTTACTAAAACCCCTATGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAGTTTCAGAATCTGTAACAGTTTACTAAAACCCCTATGAAGAA  750

seq1  CAAGAATGGTGCTACAAATGTAAAAGCTTGG-TTTAGTCCAGTCCACACT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAGAATGGTGCTACAAATGTAAAAGCTTGGTTTTAGTCCAGTCCACACT  800

seq1  TCAAGGTAGCACTACATGAAAATGGGAACACATACTCAGAGTACCTAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAGCACTACATGAAAATGGGAACACATACTCAGAGTACCTAGCC  850

seq1  TAAAGAC-TTAAGAAATACAAGCCTAAAGGTACTGCTACTTCATTTAATC  898
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAGACTTTAAGAAATACAAGCCTAAAGGTACTGCTACTTCATTTAATC  899

seq1  TGGAGGTGAATGAAAGAGAACGTACAGC-ACAGTCAAGCTCATCCAACGA  947
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGAGGTGAATGAAAGAGAACGTACAGCTACAGTCAAGCTCATCCAACGA  949

seq1  AAAATAGCACCTGAAAAAAAAAAAATTAAACTAGAAAG-AAGACTTGAAA  996
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAATAGCACCTGAAAAAAAAAAAATTAAACTAGAAAGAAAGACTTGAAA  999

seq1  GCCTAATACTA-TCAC-TCGCCTTTGGTCTTCAA-TTTTTGCAACTGG-A  1042
      ||||| ||||| |||| |||||||||||  |||| ||||||||||||| |
seq2  GCCTATTACTATTCACTTCGCCTTTGGTTCTCAATTTTTTGCAACTGGAA  1049

seq1  AAAGATGAAGATTAGATCAGC--TG-ATCTCTAAAATCTA-TGA-CACAA  1087
      |||||||||||||||||||||  || |||||| ||||||| ||| |||||
seq2  AAAGATGAAGATTAGATCAGCCTTGAATCTCTTAAATCTATTGACCACAA  1099

seq1  CCATGAAGAAAAATTAGGCAAAGAA  1112
      ||||| ||||| ||||||| |||||
seq2  CCATGGAGAAATATTAGGCCAAGAA  1124