BAC Information

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BAC

Clone NameB6Ng01-233N07
Chromosome2 (Build37)
Map Location 74,272,733 - 74,458,976
singlet/doubletdoublet
Overlap geneLnp, LOC100040519
Upstream geneWipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneEvx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233N07.bB6Ng01-233N07.g
ACCGA045774GA045775
length1,1021,097
definitionB6Ng01-233N07.b B6Ng01-233N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,272,733 - 74,273,827)(74,457,870 - 74,458,976)
sequence
gaattctctgaaaaacattgtgatgggtattagaaatttaaatgctagat
tacgttaatgaaatacttatctgagaaattataatttatcataatttata
aatttgtaaagttatcatttataataaattattttatttatcaggataaa
tattatattcctggtccttacacaccacaagtccaggaagacatcttgaa
tcgaagcgcttatttcttcaacgttcttttcctgaaaatgtgcataacta
agacttcccagaaagacctctccccagaagctgttaagaattaagctctt
tctttcccaaagccccggggatcgactgtccctttttgacacattttatc
agcaagtttaataaggtctacagtcacacttcagacttcagttctcaaac
atacttccctttaggtaaatgtaaagaccattccagccatgtaatcacgt
ttaaacgtcatctactttgaatatctcattatttattgaataaatgaatt
aactggtttacaaactaagcactcttccttggattgcttttaaaaccttt
tctaggtctgttataaaagattcttaagcaccatttattgttcttgcttt
cgagccccattactgaggacttaacaatctgaaatagatccaattttaga
ataagccacagctggagtagatcgtcacacaaacaggaagccctctgact
ctctggaatttactgaaagaattgagtcgaattttctaatttgggaaaat
gtaagtggcataaaccatcgtgtagcagttggtaccaactggagactact
gagcatgttgaaaaagcccatgtagctgatggatttctaactcagagtcc
tgcatgtggggtaaatagggaccgatacatatgcattctacacgtagaaa
cctgtggtccatttacaaaggacagatggaaaagaatccggcagcggcgt
gacttgggtatttttgggtacttgccagtaaacagcccactgactataac
aatctgtttgctccaggggtcaaattcttttaatagttatgcacctgaat
gtcatcaagtatatgggatagaagagctttgcattgtgtgaaagtaacaa
ga
gaattctatgtacttgaattttaaaaagacaatataatactaatactcac
tgacttagcttcattgagaaactagagactccaaacaagatgtgggttat
ttcaatggtgagtctgtctgttaaactgcagtacttggtcagacatctcc
ctcctttgactgcatttcttctacatttacagctcacagggatattatgt
tgtctatttcatgagagttctttgccctgctcttgaatgtacaagagcac
cgttcttagtacaaagcacagcggaaggctagcaagagtctgcgaccgga
agggaaggagatggttgaacctcagatccgctgcgagaggagtccaaggc
tgactgctaacagcagcccagaaaggtctgctctgttttataggaaggca
aggataaacagtgtgcgcgccatctgagagctttgccaaatgaaacacgg
gcaaatttttttttgagtttcttcgtgaatcttcctaaacccagtactca
ctgtctatacattaaagtctttggtggctgccaatacagggagttttaaa
acaggagccatgtatttgaatggtactatcaaagaaaacacgcctatatc
cctttattaccaacagctaaccgattaaatgcctctgctttttttgggtt
acttacaaaaaatttaccgcagagacttggtctgggaaatagttagtggt
aagaaaatatgagtgagagagagagagagagagagagagagagctttggc
ttgattttagtttgagcatttcaaagttggtgtttgcaaactcagaaaaa
aggggggtggggcgcttttcattaatgcacgattttggaaacagtcaact
cctagctcacaatgcatacaaatacaaaaatcctaatgggactattttct
tactaagcctgtaacagtttacattccacctaatggcctggggtattgag
caaactactcaatagagattttagctgctgcccacatattttagagcaat
tatccttcacaaatgcagaacctcctatataaaagcctacccagaattct
gtaaaaaacatactatttcccaatgccacttgaactaactaagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74272733_74273827
seq2: B6Ng01-233N07.b_47_1148

seq1  GAATTCTCTGAAAAACATTGTGATGGGTATTAGAAATTTAAATGCTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAAACATTGTGATGGGTATTAGAAATTTAAATGCTAGAT  50

seq1  TACGTTAATGAAATACTTATCTGAGAAATTATAATTTATCATAATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTAATGAAATACTTATCTGAGAAATTATAATTTATCATAATTTATA  100

seq1  AATTTGTAAAGTTATCATTTATAATAAATTATTTTATTTATCAGGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAAAGTTATCATTTATAATAAATTATTTTATTTATCAGGATAAA  150

seq1  TATTATATTCCTGGTCCTTACACACCACAAGTCCAGGAAGACATCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTCCTGGTCCTTACACACCACAAGTCCAGGAAGACATCTTGAA  200

seq1  TCGAAGCGCTTATTTCTTCAACGTTCTTTTCCTGAAAATGTGCATAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCGCTTATTTCTTCAACGTTCTTTTCCTGAAAATGTGCATAACTA  250

seq1  AGACTTCCCAGAAAGACCTCTCCCCAGAAGCTGTTAAGAATTAAGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCAGAAAGACCTCTCCCCAGAAGCTGTTAAGAATTAAGCTCTT  300

seq1  TCTTTCCCAAAGCCCCGGGGATCGACTGTCCCTTTTTGACACATTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCAAAGCCCCGGGGATCGACTGTCCCTTTTTGACACATTTTATC  350

seq1  AGCAAGTTTAATAAGGTCTACAGTCACACTTCAGACTTCAGTTCTCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTTAATAAGGTCTACAGTCACACTTCAGACTTCAGTTCTCAAAC  400

seq1  ATACTTCCCTTTAGGTAAATGTAAAGACCATTCCAGCCATGTAATCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCCTTTAGGTAAATGTAAAGACCATTCCAGCCATGTAATCACGT  450

seq1  TTAAACGTCATCTACTTTGAATATCTCATTATTTATTGAATAAATGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGTCATCTACTTTGAATATCTCATTATTTATTGAATAAATGAATT  500

seq1  AACTGGTTTACAAACTAAGCACTCTTCCTTGGATTGCTTTTAAAACCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTACAAACTAAGCACTCTTCCTTGGATTGCTTTTAAAACCTTT  550

seq1  TCTAGGTCTGTTATAAAAGATTCTTAAGCACCATTTATTGTTCTTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCTGTTATAAAAGATTCTTAAGCACCATTTATTGTTCTTGCTTT  600

seq1  CGAGCCCCATTACTGAGGACTTAACAATCTGAAATAGATCCAATTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCCATTACTGAGGACTTAACAATCTGAAATAGATCCAATTTTAGA  650

seq1  ATAAGCCACAGCTGGAGTAGATCGTCACACAAACAGGAAGCCCTCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCACAGCTGGAGTAGATCGTCACACAAACAGGAAGCCCTCTGACT  700

seq1  CTCTGGAATTTACTGAAAGAATTGAGTCGAATTTTCTAATTTGGGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATTTACTGAAAGAATTGAGTCGAATTTTCTAATTTGGGAAAAT  750

seq1  GTAAGTGGCATAAACCATCGTGTAGCAGTTGGTACCAACTGGAGACTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGGCATAAACCATCGTGTAGCAGTTGGTACCAACTGGAGACTACT  800

seq1  GAGCATGTTG-AAAAGCCCATGTAGCTGATGGATTTCTAACTCAGAGTCC  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGTTGAAAAAGCCCATGTAGCTGATGGATTTCTAACTCAGAGTCC  850

seq1  TGCATGTGGGGTAAATA-GGACCGATACATATGCATTTCTACACGTAGAA  898
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TGCATGTGGGGTAAATAGGGACCGATACATATGCA-TTCTACACGTAGAA  899

seq1  ACCTGTGGTCCATTTACAAAGGACAGATGGAAAAGAATCCGGCAGCGGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGTCCATTTACAAAGGACAGATGGAAAAGAATCCGGCAGCGGCG  949

seq1  TGACTTGGGTATTTTT-GGTACTTGCCAGTAAACAGCCCACTGACTATAA  997
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGACTTGGGTATTTTTGGGTACTTGCCAGTAAACAGCCCACTGACTATAA  999

seq1  CAATCTGTTTGCTCCAGGGGTCAAATTCTTTT-ATAGTTATGCA-CTG-A  1044
      |||||||||||||||||||||||||||||||| ||||||||||| ||| |
seq2  CAATCTGTTTGCTCCAGGGGTCAAATTCTTTTAATAGTTATGCACCTGAA  1049

seq1  TGTCATCGAGTATATGGGATAG-AGAGTTTTGCA-TGTGTGAAGTAAACA  1092
      ||||||| |||||||||||||| |||| |||||| ||||||||   ||||
seq2  TGTCATCAAGTATATGGGATAGAAGAGCTTTGCATTGTGTGAAAGTAACA  1099

seq1  AGA  1095
      |||
seq2  AGA  1102

seq1: chr2_74457870_74458976
seq2: B6Ng01-233N07.g_68_1164 (reverse)

seq1  AACTCTTAGTAGGTTCAAGGTGGGAATTTGGGGAATAGTATGTTTTTTTA  50
      ||||||||||  |||||| |||| |  ||||| ||||||||| |||||||
seq2  AACTCTTAGTTAGTTCAA-GTGGCA--TTGGGAAATAGTATG-TTTTTTA  46

seq1  CAGGAAATACTGGGTAGGCTTTTTATATAGGGGGTTCTGCATTTGTGAAA  100
      |||  ||| |||||||||| ||||||||||| ||||||||||||||| ||
seq2  CAG--AATTCTGGGTAGGC-TTTTATATAGGAGGTTCTGCATTTGTG-AA  92

seq1  GGATAATTTGCTCTAAAATATGTGGGCAAGCAGCCTAAAATCTCTAATTG  150
      |||||| |||||||||||||||||||| ||||| ||||||||||| ||||
seq2  GGATAA-TTGCTCTAAAATATGTGGGC-AGCAG-CTAAAATCTCT-ATTG  138

seq1  AGTAGTTTGCTCATAACCCCAGGCCATTAGGT-GAATGTAAACTGTTACA  199
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  AGTAGTTTGCTCAATACCCCAGGCCATTAGGTGGAATGTAAACTGTTACA  188

seq1  GGCTTAGTAAGAAAATAGTCCCATTAGGATTTTTGTATTTGTATGCATTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTAAGAAAATAGTCCCATTAGGATTTTTGTATTTGTATGCATTG  238

seq1  TGAGCTAGGAG-TGACTGTTTCCAAAATCGTGCATTAATGAAAAGCGCCC  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGGAGTTGACTGTTTCCAAAATCGTGCATTAATGAAAAGCGCCC  288

seq1  CACCCCCCTTTTTTCTGAGTTTGCAAACACCAACTTTGAAATGCTCAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCTTTTTTCTGAGTTTGCAAACACCAACTTTGAAATGCTCAAAC  338

seq1  TAAAATCAAGCCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAGCCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCA  388

seq1  TATTTTCTTACCACTAACTATTTCCCAGACCAAGTCTCTGCGGTAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTACCACTAACTATTTCCCAGACCAAGTCTCTGCGGTAAATTT  438

seq1  TTTGTAAGTAACCCAAAAAAAGCAGAGGCATTTAATCGGTTAGCTGTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGTAACCCAAAAAAAGCAGAGGCATTTAATCGGTTAGCTGTTGG  488

seq1  TAATAAAGGGATATAGGCGTGTTTTCTTTGATAGTACCATTCAAATACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGGGATATAGGCGTGTTTTCTTTGATAGTACCATTCAAATACAT  538

seq1  GGCTCCTGTTTTAAAACTCCCTGTATTGGCAGCCACCAAAGACTTTAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTTTTAAAACTCCCTGTATTGGCAGCCACCAAAGACTTTAATG  588

seq1  TATAGACAGTGAGTACTGGGTTTAGGAAGATTCACGAAGAAACTCAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGTGAGTACTGGGTTTAGGAAGATTCACGAAGAAACTCAAAAA  638

seq1  AAAATTTGCCCGTGTTTCATTTGGCAAAGCTCTCAGATGGCGCGCACACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCCCGTGTTTCATTTGGCAAAGCTCTCAGATGGCGCGCACACT  688

seq1  GTTTATCCTTGCCTTCCTATAAAACAGAGCAGACCTTTCTGGGCTGCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCTTGCCTTCCTATAAAACAGAGCAGACCTTTCTGGGCTGCTGT  738

seq1  TAGCAGTCAGCCTTGGACTCCTCTCGCAGCGGATCTGAGGTTCAACCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCAGCCTTGGACTCCTCTCGCAGCGGATCTGAGGTTCAACCATC  788

seq1  TCCTTCCCTTCCGGTCGCAGACTCTTGCTAGCCTTCCGCTGTGCTTTGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTTCCGGTCGCAGACTCTTGCTAGCCTTCCGCTGTGCTTTGTA  838

seq1  CTAAGAACGGTGCTCTTGTACATTCAAGAGCAGGGCAAAGAACTCTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACGGTGCTCTTGTACATTCAAGAGCAGGGCAAAGAACTCTCATG  888

seq1  AAATAGACAACATAATATCCCTGTGAGCTGTAAATGTAGAAGAAATGCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACAACATAATATCCCTGTGAGCTGTAAATGTAGAAGAAATGCAG  938

seq1  TCAAAGGAGGGAGATGTCTGACCAAGTACTGCAGTTTAACAGACAGACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGGGAGATGTCTGACCAAGTACTGCAGTTTAACAGACAGACTC  988

seq1  ACCATTGAAATAACCCACATCTTGTTTGGAGTCTCTAGTTTCTCAATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGAAATAACCCACATCTTGTTTGGAGTCTCTAGTTTCTCAATGAA  1038

seq1  GCTAAGTCAGTGAGTATTAGTATTATATTGTCTTTTTAAAATTCAAGTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCAGTGAGTATTAGTATTATATTGTCTTTTTAAAATTCAAGTAC  1088

seq1  ATAGAATTC  1107
      |||||||||
seq2  ATAGAATTC  1097