BAC Information

Click to search

BAC

Clone NameB6Ng01-233O04
Chromosome2 (Build37)
Map Location 163,134,838 - 163,135,969
singlet/doubletsinglet
Overlap geneLOC269389
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
Downstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233O04.bB6Ng01-233O04.g
ACCGA045814GA045815
length1,1211,170
definitionB6Ng01-233O04.b B6Ng01-233O04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgccacaagtagctgagaagaaagctataagatgccttaacaag
ctacagccagtttgcactagaggaaatcatgccaatttctcgtttaaaac
ttaaaagctaggaatggtagtgcacacctataattcaagaggctgaggag
tgatgacagagagtttaaagtcacctggactgtatggtaagaccctgcct
aaaagaagaacaaacaaacagaaatccacaaagaagaaatggcgtgtata
tattgtaggtagacagcgggagctgcttagggacttaaaacttgccacac
agttaaggaagctggcttgctgagcctgtatgtcgggtttgtgactgatg
tgctaacgcagatcccaatgtattgagaagagcgttggggaccagcattc
gcccatacgctgtttgcatgatgcgcatctgaaaccgtgtgggatgagaa
caaaaccgtatggaaaccatgacaacggctgatagaaaaggatggaaggc
agagacagtcaccggagccaagatgctttcttgaataagatgcagctgtc
atgaagacagggcattctgggatgtctaagcactgagcgacttcacatgg
cgtacctgaagcaaacccgttcacgccaaatgccccgaagaactgatgga
gaactgatagaaacacggggcggatggagggctttagctcagttttctct
gtctcacagctgatgtcaaaacaggacattcaatagacacggaggttttt
ttttttttatatgtagcacagtgaatattatttcaattagtttttttttt
tccagtgctaggaatcaaacccagagcatcatgcatgcagggcaagctct
ctaccctgagctactctctcacccccccaagcccacattattttagtttt
acatgaaaaaaaaaattgttttttgcaagatgtgttttctgtcctaagtg
aagccttgacatgttccaaaaaatgaaactggaggatcatgtcccgacag
caataacataggaccacagtcattaaacactcttccctgaagtaaagaac
aactcagtctcatcttgaggaacatgtcagccatagcctgagcttttctc
aggaaagccatccgtgagatc
gaattcatttctgggctttcttcgttgttttttttttttcaaattaataa
cattttaattaattcttttacacagtgtattttgaacacattcacccttt
acctccccagctcctccctggggagctgtccaccttctcacccctcccaa
tcccataccttcactttaaacaaaactacccaccaagttcattttgttct
tctcttatgctcaggagtgaaggaccattcactagagtgttgttgaccca
ccaggagccatacccgtaaagaaaactgactcttcctcctctagaagcca
tcaactgtcaagagttcagtcaggagtaggaacttgtgacctcctcccac
tccatgttaaagtgttaactggcttgtcttttgtttgtttgggttttggt
tttcaagacagggtctctccacatagctctgattgtcctgggactctgta
gaccaggctagcctcgaactcagagattctcctagcctttttctttgtca
caagccatctaggaaaggctatggcaagcaagtgagttttttggagacgg
cccaccattttgaatggctgcgatgggtgcgctctgagatgcaaggtcct
aagagacttagggtcctaagcaatcccgggattgcttcttgctgctggta
tcactttactgtaaatattatgtagcctagtgattccctgccatcagtcc
accctactgggcagatctcctgcagaatcggtctgaagatgtactttcat
gtagtaatgctctatagacaaatggatgatttcataatccctaataatga
ttttacagaactcctaaattgatgtaagtaatctcaagccctctgtagaa
gaaaagctgcaaacagagctctgtaaaccttcatggttttcccattccac
taggaaaagaaggcagcctttggaacaggtttataatcagaaaacattcc
ttctaggtagggatgaggctactatctggtactaaaggtcataactggga
tgggcatttatacaggtgtaaggacagaataatgacgactagtctattct
attcagactccaatacgagacacaagcagattgattgttctccggacaaa
cgatgctaacctatgaactgaaggttgtgccttggcttgtgtaatggtct
ctaggtggtgttaagagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163134838_163135969
seq2: B6Ng01-233O04.b_46_1166

seq1  GAATTCCGCCACAAGTAGCTGAGAAGAAAGCTATAAGATGCCTTAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCCACAAGTAGCTGAGAAGAAAGCTATAAGATGCCTTAACAAG  50

seq1  CTACAGCCAGTTTGCACTAGAGGAAATCATGCCAATTTCTCGTTTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCAGTTTGCACTAGAGGAAATCATGCCAATTTCTCGTTTAAAAC  100

seq1  TTAAAAGCTAGGAATGGTAGTGCACACCTATAATTCAAGAGGCTGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCTAGGAATGGTAGTGCACACCTATAATTCAAGAGGCTGAGGAG  150

seq1  TGATGACAGAGAGTTTAAAGTCACCTGGACTGTATGGTAAGACCCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGAGAGTTTAAAGTCACCTGGACTGTATGGTAAGACCCTGCCT  200

seq1  AAAAGAAGAACAAACAAACAGAAATCCACAAAGAAGAAATGGCGTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAACAAACAAACAGAAATCCACAAAGAAGAAATGGCGTGTATA  250

seq1  TATTGTAGGTAGACAGCGGGAGCTGCTTAGGGACTTAAAACTTGCCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGTAGACAGCGGGAGCTGCTTAGGGACTTAAAACTTGCCACAC  300

seq1  AGTTAAGGAAGCTGGCTTGCTGAGCCTGTATGTCGGGTTTGTGACTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGAAGCTGGCTTGCTGAGCCTGTATGTCGGGTTTGTGACTGATG  350

seq1  TGCTAACGCAGATCCCAATGTATTGAGAAGAGCGTTGGGGACCAGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACGCAGATCCCAATGTATTGAGAAGAGCGTTGGGGACCAGCATTC  400

seq1  GCCCATACGCTGTTTGCATGATGCGCATCTGAAACCGTGTGGGATGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATACGCTGTTTGCATGATGCGCATCTGAAACCGTGTGGGATGAGAA  450

seq1  CAAAACCGTATGGAAACCATGACAACGGCTGATAGAAAAGGATGGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCGTATGGAAACCATGACAACGGCTGATAGAAAAGGATGGAAGGC  500

seq1  AGAGACAGTCACCGGAGCCAAGATGCTTTCTTGAATAAGATGCAGCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTCACCGGAGCCAAGATGCTTTCTTGAATAAGATGCAGCTGTC  550

seq1  ATGAAGACAGGGCATTCTGGGATGTCTAAGCACTGAGCGACTTCACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAGGGCATTCTGGGATGTCTAAGCACTGAGCGACTTCACATGG  600

seq1  CGTACCTGAAGCAAACCCGTTCACGCCAAATGCCCCGAAGAACTGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTGAAGCAAACCCGTTCACGCCAAATGCCCCGAAGAACTGATGGA  650

seq1  GAACTGATAGAAACACGGGGCGGATGGAGGGCTTTAGCTCAGTTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATAGAAACACGGGGCGGATGGAGGGCTTTAGCTCAGTTTTCTCT  700

seq1  GTCTCACAGCTGATGTCAAAACAGGACATTCAATAGACACGGAGG-TTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTCACAGCTGATGTCAAAACAGGACATTCAATAGACACGGAGGTTTTT  750

seq1  TTTTTTTTATATGTAGCACAGTGAATATTATTTCAATTAG-TTTTTTTTT  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTTTATATGTAGCACAGTGAATATTATTTCAATTAGTTTTTTTTTT  800

seq1  TCCAGTGCTAGGAATCAAACCCAGAGCATCATGCATGCAGGGCAAGCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTAGGAATCAAACCCAGAGCATCATGCATGCAGGGCAAGCTCT  850

seq1  CTACCCTGAGCTACTCTCTCA-CCCCCCAAGCCCACATTATTTTAGTTTT  897
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTACCCTGAGCTACTCTCTCACCCCCCCAAGCCCACATTATTTTAGTTTT  900

seq1  ACATGAAAAAAAAAATTGTTTTTTGCAAGATGTGTTTTCTGTCCTAAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAAAAAAAATTGTTTTTTGCAAGATGTGTTTTCTGTCCTAAGTG  950

seq1  AAGCCTTGACATG-TCCCAAAAATGAAACTGGAGGATTCATGTTCCCCGA  996
      ||||||||||||| ||| |||||||||||||||||| ||||||  |||||
seq2  AAGCCTTGACATGTTCCAAAAAATGAAACTGGAGGA-TCATGT--CCCGA  997

seq1  CAGCAATAACAATAGGA-CACAGTCCATTAAAACACTCTTCCCTGAGAGT  1045
      |||||||||| |||||| |||||| |||| |||||||||||||||| |||
seq2  CAGCAATAAC-ATAGGACCACAGT-CATT-AAACACTCTTCCCTGA-AGT  1043

seq1  AAAAGACAAACTCCAGTCTTCATCTTTGAGGAACATGGCCAGGGCATAG-  1094
       |||||  |||| ||||| ||||| |||||||||||| |   | ||||| 
seq2  -AAAGAACAACT-CAGTC-TCATC-TTGAGGAACATGTC--AGCCATAGC  1087

seq1  CTGAGCTTTTCCTCAAGGAAAG-CATCCCCGTGGAGATC  1132
      |||||||||| ||| ||||||| |||  |||| ||||||
seq2  CTGAGCTTTT-CTC-AGGAAAGCCAT--CCGT-GAGATC  1121