BAC Information

Click to search

BAC

Clone NameB6Ng01-233O13
Chromosome2 (Build37)
Map Location 115,102,614 - 115,103,739
singlet/doubletsinglet
Overlap genenone
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233O13.bB6Ng01-233O13.g
ACCGA045830GA045831
length1,2001,112
definitionB6Ng01-233O13.b B6Ng01-233O13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcatt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
tgatctttcacttctttagttagagtcactctgagatattttatattatt
tgtgactattgagagggtattgtttccctatttcctttcttcagctgttt
tttctttgtgtagagaaggccattacttgtttgagtaattttatatcagc
tacttcacccgaagctggttatcagttaggagtctctggtgagattttag
ggttcattaatattacatatcatatcactggcaagggatattggactccg
tcatggattcactgatcccttgtgtgacgagtgactctgggcctaactct

gaattcactcactctttcgaatattttggtgtgtggtagtgaaaagcgct
tgctcaatacataactgttcaaatcatgggggtttcctctctccacgtgt
gtcgctgttgttggtacctcactacaatgatgagaacttgcaaatattta
cacaggaacctggttaggatttctacagcaaaagcttcttgtcttcgtca
ttcctacagcctcctcaacgggggtagaacacagcaatttggccttatgt
ttcctattttccagatcaatctgtttttcttaattttaatttataatcag
cacagctgaagcttcctaatcatgtcagacatgccaatcctcccagaagc
aaatctgatttagcatcaaggagcctggcttgtgttcacagaggggaact
tccttcccctgctctcctgaagtttttggctgtgcgcattcatatagctg
agattcaaaccagtttcctaatactcactagacagcagtctctttttgta
gatgcatgagattcctcaggagagtggagtgcatgctcagagaaatggcc
gtggggtttcctgtttatattttggtggagaacaagagaaagaagtacac
acacaagaaaaactaccttggaaaaagtctggaatgaaacagaaactgcc
gctttgagggcagaaatgcatttaccctcaggtttcagagtgatgtactg
aagggaaggagtgtaagcttaccctcctatctagttttgcatcaaagaac
agtttaacctaatagacagatagggctggtcctgtcttaagggatatgca
gttttccaggaaggcactttactggtatttgggacctataaaatggagcg
gacgagctttcgttgctggctgcaagctggagcttgtgtcagcttcacta
ggcacacaagctctgattttgtatcattaaagactcattatcttctttta
acttctgttgaagcattcatccatagatctagctagtactgaaacataga
cgtcctagcactgcgatatgcccctcctctccccagcttaagagtcttta
agatggattggcttcacagtgcagaatccaagctactgtgcagaacgtat
gaaggttatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115102614_115103739
seq2: B6Ng01-233O13.g_67_1178 (reverse)

seq1  GAAATAACCTTTCATATGTTCTTGCACAGTAGCTTTTGGATTCTGCACTG  50
      ||||||||| |||||| |||| |||||||||||  |||||||||||||||
seq2  GAAATAACC-TTCATACGTTC-TGCACAGTAGC--TTGGATTCTGCACTG  46

seq1  TGAAAGCCAATCCATCCTTTAAAGACTCTTTAAGCTTGGGGAGAGAGGGG  100
      || |||||||||||||  |||||||||| |||||| |||||||||  |||
seq2  TG-AAGCCAATCCATC--TTAAAGACTC-TTAAGC-TGGGGAGAGGAGGG  91

seq1  GCATTATCGCAGTGCTAGGAACGTCTATTGTTTCAGTACTAGCTAGATCT  150
      ||| ||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GCA-TATCGCAGTGCTAGG-ACGTCTA-TGTTTCAGTACTAGCTAGATCT  138

seq1  ATGGATGAATGCTTTCAACAGAAGTTAAAAG-AGATAATGAGTCTTTAAT  199
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  ATGGATGAATGC-TTCAACAGAAGTTAAAAGAAGATAATGAGTCTTTAAT  187

seq1  GATACAAAATCAGAGCCTTGTGTGCCTAGTGAAGCCTGACACAAGCTCCA  249
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  GATACAAAATCAGAG-CTTGTGTGCCTAGTGAAG-CTGACACAAGCTCCA  235

seq1  GCTTGCAGCCAGCAACGAAAGCTCGTCCGCTCCATTTTATAGGTCCCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGCCAGCAACGAAAGCTCGTCCGCTCCATTTTATAGGTCCCAAA  285

seq1  TACCAGTAAAGTGCCTTCCTGGAAAACTGCATATCCCTTAAGACAGGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTAAAGTGCCTTCCTGGAAAACTGCATATCCCTTAAGACAGGACC  335

seq1  AGCCCTATCTGTCTATTAGGTTAAACTGTTCTTTGATGCAAAACTAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATCTGTCTATTAGGTTAAACTGTTCTTTGATGCAAAACTAGATA  385

seq1  GGAGGGTAAGCTTACACTCCTTCCCTTCAGTACATCACTCTGAAACCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAAGCTTACACTCCTTCCCTTCAGTACATCACTCTGAAACCTGA  435

seq1  GGGTAAATGCATTTCTGCCCTCAAAGCGGCAGTTTCTGTTTCATTCCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATGCATTTCTGCCCTCAAAGCGGCAGTTTCTGTTTCATTCCAGA  485

seq1  CTTTTTCCAAGGTAGTTTTTCTTGTGTGTGTACTTCTTTCTCTTGTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCAAGGTAGTTTTTCTTGTGTGTGTACTTCTTTCTCTTGTTCTC  535

seq1  CACCAAAATATAAACAGGAAACCCCACGGCCATTTCTCTGAGCATGCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAATATAAACAGGAAACCCCACGGCCATTTCTCTGAGCATGCACT  585

seq1  CCACTCTCCTGAGGAATCTCATGCATCTACAAAAAGAGACTGCTGTCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCCTGAGGAATCTCATGCATCTACAAAAAGAGACTGCTGTCTAG  635

seq1  TGAGTATTAGGAAACTGGTTTGAATCTCAGCTATATGAATGCGCACAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTAGGAAACTGGTTTGAATCTCAGCTATATGAATGCGCACAGCC  685

seq1  AAAAACTTCAGGAGAGCAGGGGAAGGAAGTTCCCCTCTGTGAACACAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCAGGAGAGCAGGGGAAGGAAGTTCCCCTCTGTGAACACAAGC  735

seq1  CAGGCTCCTTGATGCTAAATCAGATTTGCTTCTGGGAGGATTGGCATGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTTGATGCTAAATCAGATTTGCTTCTGGGAGGATTGGCATGTC  785

seq1  TGACATGATTAGGAAGCTTCAGCTGTGCTGATTATAAATTAAAATTAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGATTAGGAAGCTTCAGCTGTGCTGATTATAAATTAAAATTAAGA  835

seq1  AAAACAGATTGATCTGGAAAATAGGAAACATAAGGCCAAATTGCTGTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTGATCTGGAAAATAGGAAACATAAGGCCAAATTGCTGTGTT  885

seq1  CTACCCCCGTTGAGGAGGCTGTAGGAATGACGAAGACAAGAAGCTTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCGTTGAGGAGGCTGTAGGAATGACGAAGACAAGAAGCTTTTGC  935

seq1  TGTAGAAATCCTAACCAGGTTCCTGTGTAAATATTTGCAAGTTCTCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATCCTAACCAGGTTCCTGTGTAAATATTTGCAAGTTCTCATCA  985

seq1  TTGTAGTGAGGTACCAACAACAGCGACACACGTGGAGAGAGGAAACCCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGAGGTACCAACAACAGCGACACACGTGGAGAGAGGAAACCCCC  1035

seq1  ATGATTTGAACAGTTATGTATTGAGCAAGCGCTTTTCACTACCACACACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGAACAGTTATGTATTGAGCAAGCGCTTTTCACTACCACACACC  1085

seq1  AAAATATTCGAAAGAGTGAGTGAATTC  1126
      |||||||||||||||||||||||||||
seq2  AAAATATTCGAAAGAGTGAGTGAATTC  1112