BAC Information

Click to search

BAC

Clone NameB6Ng01-234C05
Chromosome2 (Build37)
Map Location 35,704,490 - 35,888,542
singlet/doubletdoublet
Overlap geneTtll11
Upstream genePsmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234C05.bB6Ng01-234C05.g
ACCGA045984GA045985
length1,153605
definitionB6Ng01-234C05.b B6Ng01-234C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,887,382 - 35,888,542)(35,704,490 - 35,705,094)
sequence
gaattccattgtttgggttggaatacactcggtagctatgtgaccctagg
caaggaaggttcttagcattactgtaccttagtttcttcacctgtgaata
aggagggaggagcacagagatggtacctactgtctggagtggccttaagt
atttggtgaattacgcaccaaatgtagcctgctgggttgacacatggcag
tagtatcctaacatgtagcactaggtacgcaccagggatctccccttgtc
ccaaactacaaggactaaataaatgtctgtcctgatgcccaccgcatgac
agacatctaggaaatcaaactcactaccacattcatctttccaaagccta
tctcccaccaaacaacaaattccttccatgtggaaacgtgcttaacttat
tcacattaaattgttttcttatagatagcaaatcctgggtgaaatgcttt
gagtataatgaaggttgtattcttaggccacgaaacaggctgtgaaaaac
tttaaaaagttgcttatatagctgagtctggtggctcattcctataatcc
cagggttgggaaggctgaggcaggaggatcactgcaaggttcaagtacaa
cctgagctgcagagtgagatcttgtttcaaaacacaatgtcaattaaaga
cagacagacagacaaccaaaaacaaaacaaaacaaaacaaacaaacaaca
aaaaaaaaaaaaccaaaactgaacgacaaaagtcgcttctaccacacggg
aaaaattcagtttgaagttgtgatgttcttatgggtccttagcatttgca
acataagtcccaagtcactgttcttggtcataatgaaaaagctaggtgtg
ttggcacgtgccttgattagttactgtactactgctgtgataaaacaccg
tggccaaggcagctcatggaagaacaggttacttgggctttcagattcag
agatgtagggtgcatcatggtgaggaggcacagcagcagcaagtggagtg
tagcggcagcaggagaggaagtgtcagttaatatcaccaccacaggcctt
gacacctgtacgatgttggaattttctgcctccaagaaattagtccatga
attttgaatttagcctcaggccagtctaaggacagccgaagatggatcaa
ttc
gaattcccattttaagcgaccaaacttacattttgttcatcagtgacaag
tgtaccaatcatgttaggattttatttatggggaataaacacaagaagtc
actaaacagaaggtcacagaagtctgggagtccggagagtcccttaaggg
tgactggggcctgactggctgtagagtgagctggaggtgaaggtgaaatg
gagggagcctcactctcagctattctagaatgaagctcccactgcacagt
gttctgggatttgcgtagattatgggtccaaacacacaaagtccccaggg
agaaagaaaggctttgtgtgttcgaggcttggccccccgggggctcagct
tcactcacacaattggagtgaaacacaggaagtgatcattctgaagacag
cacagaggtaaagtggcgctttctcagccacataaaaactaaaaccatgc
cccacagcttacaacacaccaacaaatgggaccatttgctggctggtgaa
agtctttaaagtggatttcacatcagtgagcctgggaaggtctcctgctt
cagcaagaaaatagctcgcctggggccagtcagctttggtcccgtccgtc
ccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35887382_35888542
seq2: B6Ng01-234C05.b_46_1198 (reverse)

seq1  GAATTGATCCATCTTCTGCCCTTGTCCTTAGAACTTGCCTGAGGCTAAAT  50
      |||||||||||||||| ||   ||||||||| ||| ||||||||||||||
seq2  GAATTGATCCATCTTCGGC---TGTCCTTAG-ACTGGCCTGAGGCTAAAT  46

seq1  TTTAAAAAATTCAATGGACTAATTTCTTTGGAGCAGAAAATTTCAACATC  100
      |    ||||||| ||||||||||||||| |  |||||||||| |||||||
seq2  T---CAAAATTC-ATGGACTAATTTCTTGGAGGCAGAAAATTCCAACATC  92

seq1  GTACA-GTGTCAA-GCCTGTGGT-GTGATTATTACTGACACTTCCTCCTC  147
      ||||| ||||||| ||||||||| |||||  | ||||||||||||| |||
seq2  GTACAGGTGTCAAGGCCTGTGGTGGTGATATTAACTGACACTTCCT-CTC  141

seq1  CTGCTGCCGCTACACCTCCACTTGCTGCTGCTGTGCCTCCTCACCATGAT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCGCTACA-CTCCACTTGCTGCTGCTGTGCCTCCTCACCATGAT  190

seq1  GCACCCCTACATCTCTGAATCTGAAAGCCCAAGTAACCTGTTCTTCCATG  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-CCCTACATCTCTGAATCTGAAAGCCCAAGTAACCTGTTCTTCCATG  239

seq1  AGCTGCCTTGGCCACGGTGTTTTATCACAGCAGTAGTACAGTAACTAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTTGGCCACGGTGTTTTATCACAGCAGTAGTACAGTAACTAATC  289

seq1  AAGGCACGTGCCAACACACCTAGCTTTTTCATTATGACCAAGAACAGTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACGTGCCAACACACCTAGCTTTTTCATTATGACCAAGAACAGTGA  339

seq1  CTTGGGACTTATGTTGCAAATGCTAAGGACCCATAAGAACATCACAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACTTATGTTGCAAATGCTAAGGACCCATAAGAACATCACAACTT  389

seq1  CAAACTGAATTTTTCCCGTGTGGTAGAAGCGACTTTTGTCGTTCAGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAATTTTTCCCGTGTGGTAGAAGCGACTTTTGTCGTTCAGTTTT  439

seq1  GGTTTTTTTTTTTTTGTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTGTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTGGT  489

seq1  TGTCTGTCTGTCTGTCTTTAATTGACATTGTGTTTTGAAACAAGATCTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTGTCTTTAATTGACATTGTGTTTTGAAACAAGATCTCA  539

seq1  CTCTGCAGCTCAGGTTGTACTTGAACCTTGCAGTGATCCTCCTGCCTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGCTCAGGTTGTACTTGAACCTTGCAGTGATCCTCCTGCCTCAG  589

seq1  CCTTCCCAACCCTGGGATTATAGGAATGAGCCACCAGACTCAGCTATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAACCCTGGGATTATAGGAATGAGCCACCAGACTCAGCTATATA  639

seq1  AGCAACTTTTTAAAGTTTTTCACAGCCTGTTTCGTGGCCTAAGAATACAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTTTTAAAGTTTTTCACAGCCTGTTTCGTGGCCTAAGAATACAA  689

seq1  CCTTCATTATACTCAAAGCATTTCACCCAGGATTTGCTATCTATAAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTATACTCAAAGCATTTCACCCAGGATTTGCTATCTATAAGAAA  739

seq1  ACAATTTAATGTGAATAAGTTAAGCACGTTTCCACATGGAAGGAATTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAATGTGAATAAGTTAAGCACGTTTCCACATGGAAGGAATTTGT  789

seq1  TGTTTGGTGGGAGATAGGCTTTGGAAAGATGAATGTGGTAGTGAGTTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGGGAGATAGGCTTTGGAAAGATGAATGTGGTAGTGAGTTTGA  839

seq1  TTTCCTAGATGTCTGTCATGCGGTGGGCATCAGGACAGACATTTATTTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGATGTCTGTCATGCGGTGGGCATCAGGACAGACATTTATTTAG  889

seq1  TCCTTGTAGTTTGGGACAAGGGGAGATCCCTGGTGCGTACCTAGTGCTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAGTTTGGGACAAGGGGAGATCCCTGGTGCGTACCTAGTGCTAC  939

seq1  ATGTTAGGATACTACTGCCATGTGTCAACCCAGCAGGCTACATTTGGTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGATACTACTGCCATGTGTCAACCCAGCAGGCTACATTTGGTGC  989

seq1  GTAATTCACCAAATACTTAAGGCCACTCCAGACAGTAGGTACCATCTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCACCAAATACTTAAGGCCACTCCAGACAGTAGGTACCATCTCTG  1039

seq1  TGCTCCTCCCTCCTTATTCACAGGTGAAGAAACTAAGGTACAGTAATGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCCCTCCTTATTCACAGGTGAAGAAACTAAGGTACAGTAATGCT  1089

seq1  AAGAACCTTCCTTGCCTAGGGTCACATAGCTACCGAGTGTATTCCAACCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTTCCTTGCCTAGGGTCACATAGCTACCGAGTGTATTCCAACCC  1139

seq1  AAACAATGGAATTC  1161
      ||||||||||||||
seq2  AAACAATGGAATTC  1153

seq1: chr2_35704490_35705094
seq2: B6Ng01-234C05.g_69_673

seq1  GAATTCCCATTTTAAGCGACCAAACTTACATTTTGTTCATCAGTGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTAAGCGACCAAACTTACATTTTGTTCATCAGTGACAAG  50

seq1  TGTACCAATCATGTTAGGATTTTATTTATGGGGAATAAACACAAGAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAATCATGTTAGGATTTTATTTATGGGGAATAAACACAAGAAGTC  100

seq1  ACTAAACAGAAGGTCACAGAAGTCTGGGAGTCCGGAGAGTCCCTTAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGAAGGTCACAGAAGTCTGGGAGTCCGGAGAGTCCCTTAAGGG  150

seq1  TGACTGGGGCCTGACTGGCTGTAGAGTGAGCTGGAGGTGAAGGTGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGGCCTGACTGGCTGTAGAGTGAGCTGGAGGTGAAGGTGAAATG  200

seq1  GAGGGAGCCTCACTCTCAGCTATTCTAGAATGAAGCTCCCACTGCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCCTCACTCTCAGCTATTCTAGAATGAAGCTCCCACTGCACAGT  250

seq1  GTTCTGGGATTTGCGTAGATTATGGGTCCAAACACACAAAGTCCCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGATTTGCGTAGATTATGGGTCCAAACACACAAAGTCCCCAGGG  300

seq1  AGAAAGAAAGGCTTTGTGTGTTCGAGGCTTGGCCCCCCGGGGGCTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGGCTTTGTGTGTTCGAGGCTTGGCCCCCCGGGGGCTCAGCT  350

seq1  TCACTCACACAATTGGAGTGAAACACAGGAAGTGATCATTCTGAAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACACAATTGGAGTGAAACACAGGAAGTGATCATTCTGAAGACAG  400

seq1  CACAGAGGTAAAGTGGCGCTTTCTCAGCCACATAAAAACTAAAACCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTAAAGTGGCGCTTTCTCAGCCACATAAAAACTAAAACCATGC  450

seq1  CCCACAGCTTACAACACACCAACAAATGGGACCATTTGCTGGCTGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTTACAACACACCAACAAATGGGACCATTTGCTGGCTGGTGAA  500

seq1  AGTCTTTAAAGTGGATTTCACATCAGTGAGCCTGGGAAGGTCTCCTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAAAGTGGATTTCACATCAGTGAGCCTGGGAAGGTCTCCTGCTT  550

seq1  CAGCAAGAAAATAGCTCGCCTGGGGCCAGTCAGCTTTGGTCCCGTCCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAAAATAGCTCGCCTGGGGCCAGTCAGCTTTGGTCCCGTCCGTC  600

seq1  CCCCC  605
      |||||
seq2  CCCCC  605