BAC Information

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BAC

Clone NameB6Ng01-234N06
Chromosome2 (Build37)
Map Location 24,812,998 - 24,970,366
singlet/doubletdoublet
Overlap geneZmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1
Downstream geneNrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234N06.bB6Ng01-234N06.g
ACCGA046474GA046475
length987451
definitionB6Ng01-234N06.b B6Ng01-234N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,969,386 - 24,970,366)(24,812,998 - 24,813,454)
sequence
gaattctccaaactccagtttccaatctctctttcaaaggcagagttaag
ggtgcaccatattatctacaaagttcctaattttgagatcgatagcttac
atactatgtccatgaaaacagcaatatgtatacctggtctatatatacaa
atttgaatgtatgtgtgtgtgtttgcacctatgtgtgtatgtgaacgtgt
gtgcatctttgtacttagggacattgttatgtgtttcttacactctgact
ctgggcacagagaaaaaaggctcagacagacttgcaagtgggttgtgctg
cctagacccaactcacagcaagccacagaaggggaagtggcaagagaagc
agacagtggtacaaaatgaccaccccagctaagactgcccacacatagga
catcaatacacctcagggtggctctacagaccagggaaagtggatcctta
ctgaaatttgcaccctgctccatactctatacgaatatcaatggggatat
ctagggggccctggggtgttgagaagtttaaaggaccagcaatatgaaga
tttcctataaatcagaaagaatggatgggcaagaattaggcttacctcaa
gagaaggcccaatactttggggaaagactgatggtttgagggctgctaag
tacaggcgtgtcactgccaagcagtcccattacatgaagcgctgtcacca
gcatggacttagcatatgtgaatgtgtggcccagcattcaggcctagtga
tcagtgagggcttataatatttcagaacctgtatctacagtgaccccaga
atgctactacagaacctgtgggtcagcaggaaagacatttcccagccttc
tgtgctttgttcaccacacggatgtcccagagtttgctgtagatggtgtg
taaaggtatctgggctgctggatgggcagtggctccctgagatggggaaa
ctgatagggtgaatgggactgtgtttctgtgggcata
actctgtagaccaggctggccccgaactcaaatcctcctgcctctgcctc
ccgagtgctggggttaaaggcgtgagccaccatgctcggcactatctatg
ttctttactggaagataggattaaaaaaatgttgggagttgttgggggag
gggaggcattatgtagctctggctgttctggaacagtgttgaccaggctg
gccttgaactcaaaaagatctacctgcctttgcctccccagtgctgggat
caaaggtatgtgcgctaccacacctgactaggcttctaaaaagttttggt
ttttgtttttttgattttttttaaaaaaaaacaacttaattctgtgtttg
tttcacatcctgcacctcaatcctgcttaactctaccccctaggatttaa
catttttaatatggagtacatgcagtggtgatgggcaatcaaaacacaag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24969386_24970366
seq2: B6Ng01-234N06.b_45_1031 (reverse)

seq1  TATGCCCACAG-AACACAGT-CCATTCACCCTATCAGTT--CCCATCTCA  46
      ||||||||||| |||||||| ||||||||||||||||||  |||||||||
seq2  TATGCCCACAGAAACACAGTCCCATTCACCCTATCAGTTTCCCCATCTCA  50

seq1  -GGAGCCACTGCCCATCCAGCAGCCCAGATACCTTTACACACCATCTACA  95
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCACTGCCCATCCAGCAGCCCAGATACCTTTACACACCATCTACA  100

seq1  GCAAACTCTGGGACATCCGTGTGGTGAAC-AAGCACAGAAGGCTGGGAAA  144
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAAACTCTGGGACATCCGTGTGGTGAACAAAGCACAGAAGGCTGGGAAA  150

seq1  TGTCTTTCCTGCTGACCCACAGGTTCTGTAGTAGCATTCTGGGGTCACTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCTGCTGACCCACAGGTTCTGTAGTAGCATTCTGGGGTCACTG  200

seq1  TAGATACAGGTTCTGAAATATTATAAGCCCTCACTGATCACTAGGCCTGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGGTTCTGAAATATTATAAGCCCTCACTGATCACTAGGCCTGA  250

seq1  ATGCTGGGCCACACATTCACATATGCTAAGTCCATGCTGGTGACAGCGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGCCACACATTCACATATGCTAAGTCCATGCTGGTGACAGCGCT  300

seq1  TCATGTAATGGGACTGCTTGGCAGTGACACGCCTGTACTTAGCAGCCCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAATGGGACTGCTTGGCAGTGACACGCCTGTACTTAGCAGCCCTC  350

seq1  AAACCATCAGTCTTTCCCCAAAGTATTGGGCCTTCTCTTGAGGTAAGCCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCAGTCTTTCCCCAAAGTATTGGGCCTTCTCTTGAGGTAAGCCT  400

seq1  AATTCTTGCCCATCCATTCTTTCTGATTTATAGGAAATCTTCATATTGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCCCATCCATTCTTTCTGATTTATAGGAAATCTTCATATTGCT  450

seq1  GGTCCTTTAAACTTCTCAACACCCCAGGGCCCCCTAGATATCCCCATTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTAAACTTCTCAACACCCCAGGGCCCCCTAGATATCCCCATTGA  500

seq1  TATTCGTATAGAGTATGGAGCAGGGTGCAAATTTCAGTAAGGATCCACTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGTATAGAGTATGGAGCAGGGTGCAAATTTCAGTAAGGATCCACTT  550

seq1  TCCCTGGTCTGTAGAGCCACCCTGAGGTGTATTGATGTCCTATGTGTGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCTGTAGAGCCACCCTGAGGTGTATTGATGTCCTATGTGTGGG  600

seq1  CAGTCTTAGCTGGGGTGGTCATTTTGTACCACTGTCTGCTTCTCTTGCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAGCTGGGGTGGTCATTTTGTACCACTGTCTGCTTCTCTTGCCA  650

seq1  CTTCCCCTTCTGTGGCTTGCTGTGAGTTGGGTCTAGGCAGCACAACCCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTCTGTGGCTTGCTGTGAGTTGGGTCTAGGCAGCACAACCCAC  700

seq1  TTGCAAGTCTGTCTGAGCCTTTTTTCTCTGTGCCCAGAGTCAGAGTGTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCTGTCTGAGCCTTTTTTCTCTGTGCCCAGAGTCAGAGTGTAA  750

seq1  GAAACACATAACAATGTCCCTAAGTACAAAGATGCACACACGTTCACATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATAACAATGTCCCTAAGTACAAAGATGCACACACGTTCACATA  800

seq1  CACACATAGGTGCAAACACACACACATACATTCAAATTTGTATATATAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGGTGCAAACACACACACATACATTCAAATTTGTATATATAGA  850

seq1  CCAGGTATACATATTGCTGTTTTCATGGACATAGTATGTAAGCTATCGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATACATATTGCTGTTTTCATGGACATAGTATGTAAGCTATCGAT  900

seq1  CTCAAAATTAGGAACTTTGTAGATAATATGGTGCACCCTTAACTCTGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAGGAACTTTGTAGATAATATGGTGCACCCTTAACTCTGCCT  950

seq1  TTGAAAGAGAGATTGGAAACTGGAGTTTGGAGAATTC  981
      |||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGAGATTGGAAACTGGAGTTTGGAGAATTC  987

seq1: chr2_24812998_24813454
seq2: B6Ng01-234N06.g_68_524

seq1  GAATTCACTCTGTAGACCAGGCTGGCCCCGAACTCAAATCCTCCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCCCGAACTCAAATCCTCCTGCCTC  50

seq1  TGCCTCCCGAGTGCTGGGGTTAAAGGCGTGAGCCACCATGCTCGGCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAGTGCTGGGGTTAAAGGCGTGAGCCACCATGCTCGGCACTA  100

seq1  TCTATGTTCTTTACTGGAAGATAGGATTAAAAAAATGTTGGGAGTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTCTTTACTGGAAGATAGGATTAAAAAAATGTTGGGAGTTGTTG  150

seq1  GGGGAGGGGAGGCATTATGTAGCTCTGGCTGTTCTGGAACAGTGTTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGAGGCATTATGTAGCTCTGGCTGTTCTGGAACAGTGTTGACC  200

seq1  AGGCTGGCCTTGAACTCAAAAAGATCTACCTGCCTTTGCCTCCCCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTCAAAAAGATCTACCTGCCTTTGCCTCCCCAGTGC  250

seq1  TGGGATCAAAGGTATGTGCGCTACCACACCTGACTAGGCTTCTAAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAAAGGTATGTGCGCTACCACACCTGACTAGGCTTCTAAAAAGT  300

seq1  TTTGGTTTTTGTTTTTTTGATTTTTTTTAAAAAAAAACAACTTAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTGTTTTTTTGATTTTTTTTAAAAAAAAACAACTTAATTCTG  350

seq1  TGTTTGTTTCACATCCTGCACCTCAATCCTGCTTAACTCTACCCCCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTCACATCCTGCACCTCAATCCTGCTTAACTCTACCCCCTAGG  400

seq1  ATTTAACATTTTTAATATGGAGTACATGCAGTGGTGATGGGCAATCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATTTTTAATATGGAGTACATGCAGTGGTGATGGGCAATCAAAA  450

seq1  CACAAGT  457
      |||||||
seq2  CACAAGT  457