BAC Information

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BAC

Clone NameB6Ng01-235B01
Chromosome2 (Build37)
Map Location 159,839,292 - 159,975,412
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235B01.bB6Ng01-235B01.g
ACCGA046642GA046643
length1,1531,078
definitionB6Ng01-235B01.b B6Ng01-235B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,974,279 - 159,975,412)(159,839,292 - 159,840,372)
sequence
gaattcatgagaggttctgggtcatggtcctctgcttctgagcaatatgg
caccgtgctactttctatcccagggagactgctgccctcatctgtttttc
tttcctgagctctctttgtctttctctgacttctaatcaagctaacgcca
gtcttgtttcacagtcctgggaggttgttcagtccagagacaaggcccca
agacaacccttttttatttaacgcttcatgtacattttgcaaaccaaata
aggatggcagcttagttcccagtgttttggctaatgttgccttctggttt
tgacttgatattataagaagtcacaggaagtggacacagggaagcaagtc
tttgtgcttttaatgcacattccaatgagcctgtaatcatttcacattaa
aaaaatgatatctcttgtcccacaaagacttaaaattcagacaataaaac
aaatgagcaaaataaaatattcagatagatctttctagattggagggtag
aagaaatcaaatcttcaattcgctcatttgaatgtttgctgagtcatcac
ttggatataacaccccaccccccattcccaggggctgttggaaagggaac
ttactctggtctagccccatcttcatttcaggtttcctgggatgctatct
ccggtagcctcctccctgaagaagggagttctgccaggcccgccccaagc
ctccccaggccagggttggtctgcagacacatggctgggctgggcacagc
tggccccagggctcaggctgaacctgttgctgccatatgcacccggattt
ggctcctgttaaaattctctcctgtacttttcctggtaggcacacggcct
caataaccccaccttgagtcagagggatgcgcggagcgcctaggaggtgc
cgctctggctcagttgccagctctccctaccctggctttgattgtcatcg
gagctgaatccttcctctttcttccctgggggcagggtgtcaagcttctc
tcccgtgcagactccagctgccactagtctgggcaagttggaagtacccc
tcccttgggcactgtctgggtctttctcttatttctcctacctggtttgg
aagctgtggagtgtgacttctatatagcggttgccttatgtagcttagtg
ttt

gatcaggaccatcgcctgccaatgagtgactctgcctgctacatgatgaa
ttgctacaaagtctagtttaagccctctacctcttggatctctctgggga
aagctgagatggggaggaggattgcacccagcataatctgtattttttta
gatgggcagatcatagtcaaggctggctccaaggtgatattgccacccag
aatagccacaggaaaaggcaagggcagggtgcccttgtgggtctcatcaa
attaacaaatcatctcatcacctcaagccaagctcagccaggcaacatcc
ctctgtccctagggacaacccatagcgtttgaaaggcatgcatgcacgtg
cacatgtatacacacacatcacacacacacacacacacacacacacacac
acacacaccacatcacatgactctggtcacttctagttttaattgtatca
agttcataatttccagccttagcatggcagtcccttgagagggtgaggta
ggttggtctgtatggatcactgtaactggcacaaccccatccctagaggg
tacccaacaagtgcccactgacctgaaaggttcctagaatgaaatatatg
gctaactttaacctaaaagtatgagtaaagtagtgtaattaaatccttac
attctcccttttgtcccttacaaagtgaggtaaccagtagccgtaacaag
accatcaaatggtaaaatggattagttgtgtagtcactgatagacctgtc
ttcaagtcctgtctgtatgctcttccatacactaaagactctgaagacag
tgcttcgggggattctaagaccctcccaatcaatgcctattgacttaagg
tgttaagtgaacagtaagtccagtaatattttccaatcctgcttattaat
ctcctaatttgactgaatctcaggcctgggagaggtgactcttgtcctgg
aggtgttccaccagaagaggagaattagttaaaaaggtcttcagagtctc
atttagaattgacaaaggcatactagtactcttggagaggtccgaaaaaa
tgaaaatattaccagattcaatgtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159974279_159975412
seq2: B6Ng01-235B01.b_45_1197 (reverse)

seq1  -------AAACTAC-TAAGCCA--CGCTATATAGAACTCAC---TCACAG  37
             || |||| |||| ||  |||||||||||| ||||    |||||
seq2  AAACACTAAGCTACATAAGGCAACCGCTATATAGAAGTCACACTCCACAG  50

seq1  CCTCCACACGGGTAAGGAGGAATAAGAGAAAAGACCAGACAAGTGGCCCA  87
      | |||| ||  |  ||||| |||||||||||   |||||| |||| || |
seq2  CTTCCAAACCAGGTAGGAGAAATAAGAGAAAGACCCAGAC-AGTGCCCAA  99

seq1  GGGA-GGGTACTTCCAACTTGCCCAGACTAGTGGCAGCTGGAGTCTGCAC  136
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTACTTCCAACTTGCCCAGACTAGTGGCAGCTGGAGTCTGCAC  149

seq1  GGGAGAGAAGC-TGACACCCTG-CCCCAGGGAAG-AAGAGG-AGGATTCA  182
      ||||||||||| |||||||||| ||||||||||| |||||| ||||||||
seq2  GGGAGAGAAGCTTGACACCCTGCCCCCAGGGAAGAAAGAGGAAGGATTCA  199

seq1  GCTCCGATGACAATCAAAGCCAGGGTAGGGAGAGCTGGC-ACTGAGCCAG  231
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTCCGATGACAATCAAAGCCAGGGTAGGGAGAGCTGGCAACTGAGCCAG  249

seq1  AGCGGCACCTCCTAGGCGCTCCGCGCATCCCTCTGACTCAAGGTGGGGTT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCACCTCCTAGGCGCTCCGCGCATCCCTCTGACTCAAGGTGGGGTT  299

seq1  ATTGAGGCCGTGTGCCTACCAGG-AAAGTACAGGAGAGAATTTTAACAGG  330
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTGAGGCCGTGTGCCTACCAGGAAAAGTACAGGAGAGAATTTTAACAGG  349

seq1  AGCCAAATCCGGGTGCATATGGCAGCAACAGGTTCAGCCTGAGCCCTGGG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATCCGGGTGCATATGGCAGCAACAGGTTCAGCCTGAGCCCTGGG  399

seq1  GCCAGCTGTGCCCAGCCCAGCCATGTGTCTGCAGACCAACCCTGGCCTGG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTGCCCAGCCCAGCCATGTGTCTGCAGACCAACCCTGGCCTGG  449

seq1  GGAGGCTTGGGGCGGGCCTGGCAGAACTCCCTTCTTCAGGGAGGAGGCTA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTGGGGCGGGCCTGGCAGAACTCCCTTCTTCAGGGAGGAGGCTA  499

seq1  CCGGAGATAGCATCCCAGGAAACCTGAAATGAAGATGGGGCTAGACCAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGATAGCATCCCAGGAAACCTGAAATGAAGATGGGGCTAGACCAGA  549

seq1  GTAAGTTCCCTTTCCAACAGCCCCTGGGAATGGGGGGTGGGGTGTTATAT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTCCCTTTCCAACAGCCCCTGGGAATGGGGGGTGGGGTGTTATAT  599

seq1  CCAAGTGATGACTCAGCAAACATTCAAATGAGCGAATTGAAGATTTGATT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGATGACTCAGCAAACATTCAAATGAGCGAATTGAAGATTTGATT  649

seq1  TCTTCTACCCTCCAATCTAGAAAGATCTATCTGAATATTTTATTTTGCTC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACCCTCCAATCTAGAAAGATCTATCTGAATATTTTATTTTGCTC  699

seq1  ATTTGTTTTATTGTCTGAATTTTAAGTCTTTGTGGGACAAGAGATATCAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTATTGTCTGAATTTTAAGTCTTTGTGGGACAAGAGATATCAT  749

seq1  TTTTTTAATGTGAAATGATTACAGGCTCATTGGAATGTGCATTAAAAGCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGTGAAATGATTACAGGCTCATTGGAATGTGCATTAAAAGCA  799

seq1  CAAAGACTTGCTTCCCTGTGTCCACTTCCTGTGACTTCTTATAATATCAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTGCTTCCCTGTGTCCACTTCCTGTGACTTCTTATAATATCAA  849

seq1  GTCAAAACCAGAAGGCAACATTAGCCAAAACACTGGGAACTAAGCTGCCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACCAGAAGGCAACATTAGCCAAAACACTGGGAACTAAGCTGCCA  899

seq1  TCCTTATTTGGTTTGCAAAATGTACATGAAGCGTTAAATAAAAAAGGGTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTTGGTTTGCAAAATGTACATGAAGCGTTAAATAAAAAAGGGTT  949

seq1  GTCTTGGGGCCTTGTCTCTGGACTGAACAACCTCCCAGGACTGTGAAACA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGGCCTTGTCTCTGGACTGAACAACCTCCCAGGACTGTGAAACA  999

seq1  AGACTGGCGTTAGCTTGATTAGAAGTCAGAGAAAGACAAAGAGAGCTCAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCGTTAGCTTGATTAGAAGTCAGAGAAAGACAAAGAGAGCTCAG  1049

seq1  GAAAGAAAAACAGATGAGGGCAGCAGTCTCCCTGGGATAGAAAGTAGCAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAACAGATGAGGGCAGCAGTCTCCCTGGGATAGAAAGTAGCAC  1099

seq1  GGTGCCATATTGCTCAGAAGCAGAGGACCATGACCCAGAACCTCTCATGA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATATTGCTCAGAAGCAGAGGACCATGACCCAGAACCTCTCATGA  1149

seq1  ATTC  1134
      ||||
seq2  ATTC  1153


seq1: chr2_159839292_159840372
seq2: B6Ng01-235B01.g_74_1151

seq1  GATCAGGACCATCGCCTGCCAATGAGTGACTCTGCCTGCTACATGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGACCATCGCCTGCCAATGAGTGACTCTGCCTGCTACATGATGAA  50

seq1  TTGCTACAAAGTCTAGTTTAAGCCCTCTACCTCTTGGATCTCTCTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAAAGTCTAGTTTAAGCCCTCTACCTCTTGGATCTCTCTGGGGA  100

seq1  AAGCTGAGATGGGGAGGAGGATTGCACCCAGCATAATCTGTATTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGATGGGGAGGAGGATTGCACCCAGCATAATCTGTATTTTTTTA  150

seq1  GATGGGCAGATCATAGTCAAGGCTGGCTCCAAGGTGATATTGCCACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAGATCATAGTCAAGGCTGGCTCCAAGGTGATATTGCCACCCAG  200

seq1  AATAGCCACAGGAAAAGGCAAGGGCAGGGTGCCCTTGTGGGTCTCATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCACAGGAAAAGGCAAGGGCAGGGTGCCCTTGTGGGTCTCATCAA  250

seq1  ATTAACAAATCATCTCATCACCTCAAGCCAAGCTCAGCCAGGCAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAATCATCTCATCACCTCAAGCCAAGCTCAGCCAGGCAACATCC  300

seq1  CTCTGTCCCTAGGGACAACCCATAGCGTTTGAAAGGCATGCATGCACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTAGGGACAACCCATAGCGTTTGAAAGGCATGCATGCACGTG  350

seq1  CACATGTATACACACACATCACACACACACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATACACACACATCACACACACACACACACACACACACACACAC  400

seq1  ACACACACCACATCACATGACTCTGGTCACTTCTAGTTTTAATTGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCACATCACATGACTCTGGTCACTTCTAGTTTTAATTGTATCA  450

seq1  AGTTCATAATTTCCAGCCTTAGCATGGCAGTCCCTTGAGAGGGTGAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAATTTCCAGCCTTAGCATGGCAGTCCCTTGAGAGGGTGAGGTA  500

seq1  GGTTGGTCTGTATGGATCACTGTAACTGGCACAACCCCATCCCTAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCTGTATGGATCACTGTAACTGGCACAACCCCATCCCTAGAGGG  550

seq1  TACCCAACAAGTGCCCACTGACCTGAAAGGTTCCTAGAATGAAATATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACAAGTGCCCACTGACCTGAAAGGTTCCTAGAATGAAATATATG  600

seq1  GCTAACTTTAACCTAAAAGTATGAGTAAAGTAGTGTAATTAAATCCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTTAACCTAAAAGTATGAGTAAAGTAGTGTAATTAAATCCTTAC  650

seq1  ATTCTCCCTTTTGTCCCTTACAAAGTGAGGTAACCAGTAGCCGTAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCTTTTGTCCCTTACAAAGTGAGGTAACCAGTAGCCGTAACAAG  700

seq1  ACCATCAAATGGTAAAATGGATTAGTTGTGTAGTCACTGATAGACCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAATGGTAAAATGGATTAGTTGTGTAGTCACTGATAGACCTGTC  750

seq1  TTCAAGTCCTGTCTGTATGCTCTTCCATACACTAAAGACTCTGAAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCCTGTCTGTATGCTCTTCCATACACTAAAGACTCTGAAGACAG  800

seq1  TGCTTCGGGGGATTCTAAGACCCTCCCAATCAATGCCTATTGACTTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGGGGGATTCTAAGACCCTCCCAATCAATGCCTATTGACTTAAGG  850

seq1  TGTTAAGTGAACAGTAAGTCCAGTAATATTTTCCAATCCTGCTTATTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTGAACAGTAAGTCCAGTAATATTTTCCAATCCTGCTTATTAAT  900

seq1  CTCCTAATTTGACTGAAATCTCA-GCCTGGGAGAGGTGACTCTTGTCCTG  949
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  CTCCTAATTTGACTG-AATCTCAGGCCTGGGAGAGGTGACTCTTGTCCTG  949

seq1  GAGGTGTTCCACCAGAAAGAGAAGAAAATTAGTTAAAAAGGTC-TCAGAG  998
      ||||||||||||||||   ||| || ||||||||||||||||| ||||||
seq2  GAGGTGTTCCACCAGA---AGAGGAGAATTAGTTAAAAAGGTCTTCAGAG  996

seq1  TCTCATTTAG-ATTGACAAAGGCATAACTAGTAACTCT--GAGAAGT-CG  1044
      |||||||||| |||||||||||||| |||||| |||||  |||| || ||
seq2  TCTCATTTAGAATTGACAAAGGCAT-ACTAGT-ACTCTTGGAGAGGTCCG  1044

seq1  AAAAAATGAAAAATATTAACAGATTTCAAATGTGATG  1081
      |||||||| ||||||||| ||||||   |||||||||
seq2  AAAAAATG-AAAATATTACCAGATT--CAATGTGATG  1078


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