BAC Information

Click to search

BAC

Clone NameB6Ng01-235N07
Chromosome2 (Build37)
Map Location 173,807,766 - 173,808,900
singlet/doubletsinglet
Overlap genenone
Upstream geneSpo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
Downstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235N07.bB6Ng01-235N07.g
ACCGA047207GA047208
length1,1411,172
definitionB6Ng01-235N07.b B6Ng01-235N07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcttctggtgctagaagtcaaaagtggagctccctttagccc
atgtgatccccaaataacctacacgtgcttccagaggttggaatcctgtt
tggtcttttccccttctaattgtagttacaaaaatgtgtctcagtttcct
gtttctacgtttgcttcatcctcctgcctagatagcctgttagcgttatg
atgtgtcctgagcctggcctctatattgtgaggattttaagcagcactgc
caaccaccagaggtactggcaccattgtgggctcgtgactgagaggcacc
cataacctcctgcttcttttttgatcccatttgagcttcttcagccgcct
gagtcccctcttctgttcccgcttagacctgtatcatgacagcatgcatc
tccttcaagcaacaaagagtttgctccgcaggcaagatgcttggggacca
aaggcttgggctagggcatgaacagtcagtgcaggcccatgtttcttctt
tggctagcatatgggagcctgttggacccacctctcaaatagtttagaaa
atcatccaggtacaaccatcttcaactctccccaggctgatgtgactggt
tgcttgaatgtctgtccattcctcttcaaattcctctacaccctgcgtct
cccatcctttttgctcattctttattattactaattattattattaactg
ataaaatttattttaaaaatatacaactcaaaattgactttttttaagtc
atcaaaataattttataatagataaatgcctcttaaatatacatatcttc
taaagttaaaataatatgcactcaagcagtttttaaaatctagctgggac
attaaacatgataaaaatagaaagaaaaaaaaaaaaaacctcttatgaag
tcctcttatgaaaggaaattgtgaaaagtttcctgattagacaagaaacc
aattccatctccaagggagaatttgcagcaataactgtcggcctctatag
aatggaattgcgttagtgtccttctgtttctaatttttgtaaaaatagct
tgaagcgattggtattaggtcttcttggaagctgatagaattctgcacta
acttcatcagctgccgttttggttgggaactttttaatgac
gaattcaactatttagttgaaaattttttgcatctttgttcatcagagaa
gttggttggtagtttcctttgttgctgtgtctttacttggttttgatgtg
agaataactctctgccggagatgagtttagaagtgttcctttgtattccg
tgttgtgaaacaagttaagaagagttggtatgggatcttccttgaaagtc
tgacagaattcagcagtgaggccaggaagttggggcacacagctttaact
cagcacttgggaggcagaggcaggcagatctctatgagttcaaggccagc
caagtctcctgagcaagttccaagcctgagatacacagagaaaccctgtc
tcaaacaaacaaacaaacaaacaaacaaacaaacggcagtgaataagtct
gtcctgggcttttatgagacacacttttgattacagctttgatcacattg
tttgtattgagcctctctgacttatgtctatcttctggacttaattttgg
taaattacataagtttagaaattcttttatttcttctgagttatccaact
ttttagagttcaagtttttataataatttctaataatgttgcatgttgca
ttggagtctgttgtcagaacagcttttgatctttaattttgttaatttgt
gttttatccctctttctttttatcaggtagcattgttgaagggtttgtca
atcttataaactattcagaaaaccccactgttttattagtttctttaccc
atcttttatttaatattaataacctatgatttttagctatctgctgtgtt
tggggttgggcatttcttctctagacccttgaggtacatcataaagttgt
tcactggatatctatacggttttcggtttttactatgcacacttaccact
gtaagtttcctcctaggattgccttggctttatccccaaaggttccgata
gggattgcatttcattatcagtgtctctaggtaattgggaaatttcctcc
ctgatttggttggatgaattgctatcaaggtatggtgttctctagtctct
aaggatttttatcgttcttcggtttccatgttagtttctaggtttttaat
ttactagaactggaataaacaacagttataatcctccaagtttgtgtaat
tcacgatttgtgttgtactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173807766_173808900
seq2: B6Ng01-235N07.b_48_1188

seq1  GAATTCTCTCTTCTGGTGCTAGAAGTCAAAAGTGGAGCTCCCTTTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTCTGGTGCTAGAAGTCAAAAGTGGAGCTCCCTTTAGCCC  50

seq1  ATGTGATCCCCAAATAACCTACACGTGCTTCCAGAGGTTGGAATCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCCCCAAATAACCTACACGTGCTTCCAGAGGTTGGAATCCTGTT  100

seq1  TGGTCTTTTCCCCTTCTAATTGTAGTTACAAAAATGTGTCTCAGTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTCCCCTTCTAATTGTAGTTACAAAAATGTGTCTCAGTTTCCT  150

seq1  GTTTCTACGTTTGCTTCATCCTCCTGCCTAGATAGCCTGTTAGCGTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACGTTTGCTTCATCCTCCTGCCTAGATAGCCTGTTAGCGTTATG  200

seq1  ATGTGTCCTGAGCCTGGCCTCTATATTGTGAGGATTTTAAGCAGCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTGAGCCTGGCCTCTATATTGTGAGGATTTTAAGCAGCACTGC  250

seq1  CAACCACCAGAGGTACTGGCACCATTGTGGGCTCGTGACTGAGAGGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCAGAGGTACTGGCACCATTGTGGGCTCGTGACTGAGAGGCACC  300

seq1  CATAACCTCCTGCTTCTTTTTTGATCCCATTTGAGCTTCTTCAGCCGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTCCTGCTTCTTTTTTGATCCCATTTGAGCTTCTTCAGCCGCCT  350

seq1  GAGTCCCCTCTTCTGTTCCCGCTTAGACCTGTATCATGACAGCATGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCTCTTCTGTTCCCGCTTAGACCTGTATCATGACAGCATGCATC  400

seq1  TCCTTCAAGCAACAAAGAGTTTGCTCCGCAGGCAAGATGCTTGGGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGCAACAAAGAGTTTGCTCCGCAGGCAAGATGCTTGGGGACCA  450

seq1  AAGGCTTGGGCTAGGGCATGAACAGTCAGTGCAGGCCCATGTTTCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGGGCTAGGGCATGAACAGTCAGTGCAGGCCCATGTTTCTTCTT  500

seq1  TGGCTAGCATATGGGAGCCTGTTGGACCCACCTCTCAAATAGTTTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCATATGGGAGCCTGTTGGACCCACCTCTCAAATAGTTTAGAAA  550

seq1  ATCATCCAGGTACAACCATCTTCAACTCTCCCCAGGCTGATGTGACTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAGGTACAACCATCTTCAACTCTCCCCAGGCTGATGTGACTGGT  600

seq1  TGCTTGAATGTCTGTCCATTCCTCTTCAAATTCCTCTACACCCTGCGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAATGTCTGTCCATTCCTCTTCAAATTCCTCTACACCCTGCGTCT  650

seq1  CCCATCC-TTTTGCTCATTCTTTATTATTACTAATTATTATTATTAACTG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTTTTGCTCATTCTTTATTATTACTAATTATTATTATTAACTG  700

seq1  ATAAAATTTA-TTTAAAAATATACAACTCAAAATTGACTTTTTTTAAGTC  748
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTATTTTAAAAATATACAACTCAAAATTGACTTTTTTTAAGTC  750

seq1  ATCAAAATAA-TTTATAATAGATAAATGCCTCTTAAATATACATATCTTC  797
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAATTTTATAATAGATAAATGCCTCTTAAATATACATATCTTC  800

seq1  TAAAGTTAAAAATAATATGCACTCAAGCAGTTTTTAAAATCTAGCTGGAA  847
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGTT-AAAATAATATGCACTCAAGCAGTTTTTAAAATCTAGCTGGGA  849

seq1  CATTAAACATGATAAAAATAGAAAG-AAAAAAAAAAAAACCTCTTATGAA  896
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATTAAACATGATAAAAATAGAAAGAAAAAAAAAAAAAACCTCTTATGAA  899

seq1  GTCCTC-TATGAAAGGAAATTGTGAAAAG-TTCCTGATTAGAC-AGAAAC  943
      |||||| |||||||||||||||||||||| ||||||||||||| ||||||
seq2  GTCCTCTTATGAAAGGAAATTGTGAAAAGTTTCCTGATTAGACAAGAAAC  949

seq1  C-ATTCCATCTCCAAGGGAGAATTTGCAGC-ATAACTGT-GGCTTC-ATA  989
      | |||||||||||||||||||||||||||| |||||||| ||| || |||
seq2  CAATTCCATCTCCAAGGGAGAATTTGCAGCAATAACTGTCGGCCTCTATA  999

seq1  GAAT-GAATTG-GGTAGTGTTCCTTCTGTTTCTA--TTTTGT-AGAATAG  1034
      |||| |||||| | ||||| ||||||||||||||  |||||| | |||||
seq2  GAATGGAATTGCGTTAGTG-TCCTTCTGTTTCTAATTTTTGTAAAAATAG  1048

seq1  TTTGAAGCGTATTGGTATTAGGTCTTCTTTGAAGGTTTGATAGAATTCTG  1084
       |||||||| ||||||||||||||||||| ||||   |||||||||||||
seq2  CTTGAAGCG-ATTGGTATTAGGTCTTCTTGGAAG--CTGATAGAATTCTG  1095

seq1  CACTAAATTCATCTGGCCCTGGCCTTTTTTGGTTGGGAAATTTTTAATGA  1134
      |||||| |||||| |   |||  |  ||||||||||||| ||||||||||
seq2  CACTAACTTCATCAG---CTG--CCGTTTTGGTTGGGAACTTTTTAATGA  1140

seq1  C  1135
      |
seq2  C  1141