BAC Information

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BAC

Clone NameB6Ng01-236H17
Chromosome2 (Build37)
Map Location 78,005,185 - 78,117,015
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236H17.bB6Ng01-236H17.g
ACCGA047689GA047690
length1,1271,068
definitionB6Ng01-236H17.b B6Ng01-236H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,005,185 - 78,006,311)(78,115,938 - 78,117,015)
sequence
gaattcacaagagatccatctgcctctgcccctctgagaactggaactaa
aagtgtgttccactttacctgaccagaaagactgttctaattgtaacatt
attatcaagcacaaattgcagcaaataagacataaactcttgtaaatctt
taattctagctgttgggagtcagaggcaatgggtgcgactgtggtgtgat
atgtatctttgtgagttagaggctagcctggattatctacatagtaagtt
ccaggccaacctgggctacatagtgagaccttgtataaaacagctaataa
tatgtattctcaagatgttttcatggaaacagccatgtacctgtgatgac
atatcactataaaatttgtttgaaattagaaaggcaaaaaaatgcataat
gaaaaccgtttgttactagataattaaaattgcatggctttagatctcat
agcatttcccacaaacactgcgtttcgcccttgtcctggaaacgtgcagg
ctcagcttcacctggtcagcattcttgcaaggctatgttcacccggggct
gagtggcagatggcctctgcagtcttccacggccccggtccgtcaccatc
acctttcttctctctcccagcttgccttcctggttcacgctcactcacag
acttctgttgacatttgaaattgtgatgccggacgaggtccaatcctttc
taaacacagtcaggccttttgcaggacgctttctgcttgaacacatttac
aaggcagctctgctctttaggtgacccgtgctagagctgcacactcttta
gtttcctgccgccaagctttttcttacgctgatcctcaatgtgtttctta
taactctgaatctccccgacgtctgtcttaaagtcaaaggtgtctttgct
tccgctttgtgtgcttgcatctcccaatgcacctgtcagacggtggtaaa
agcggtatgaagacagaggagctctcggcttgaccctgagcgtccttgcg
ctcggctgcatttttttcttcttcagttctctagatttataaattaaact
tcttcatttgagtcattgcaaattcatattcagtggtaataaatactaca
gaaccagcccttggtgttttcttattc

gaattcctctcaaatcaaatgattacatatgcaaacttagccctaaatag
tacatgtctataccacctctaaagcattggggacattcagtgagaagcag
cagcaggagtgtaggaaccgatgagagggacaaaggagccacgtcctaaa
caagacatgacaatctgctcacaaaatcacagcagcagtgatttttctgc
tcagatcctattgccttctccttggggctgagggagaaagtagaggcccc
agctctccttaaggacatgttgactgttaagggctggtgtgggacacttt
cttctctggtatagccacctgctagttccacatgctccagtaaacactct
tcctcatatgctcatgtgagcaaccctaataaattcaatgaatcacaaac
ccttttaaaaaccatgaaaataggagggggatttattaggggcaagcaga
catttagcagaagtgagaggggagtacgagactaacaagagtatatgatc
cagttacatcaaaacttatatgacactgtcagagaataaatgtttaaaag
aaaagactttcaaagtaaatatgacaagcaaaaggtatggcacgcacaca
ataaaatgtggaaattctctttcttacaaagaaggggtgcagaaaaccgg
ttacatagaattaaatggtggtgtagaagtacttagttcgtgggggcatt
ctaaatgcagcaataaaacagatgaaacacatagacttaaaatgggaaaa
ttcacgggtatggacaaaccataaaatgaccccatcagaagaacagtgga
aagaacggatgtggatggttaccctgggcagggctagggcaccccagagc
tggcccaacagagctggaatcctggaatccccagcacagtcaccattgct
tggcttctgctcactggcctgagggatttctttccaaggccataaaatta
aattagaattcactgcttaagcgtatgatttcctactgtttatgttggta
tcgtttacacaactgcattaatcaaaccagtatttttatttcagacagag
ccacaatattgtgtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78005185_78006311
seq2: B6Ng01-236H17.b_46_1172

seq1  GAATTCACAAGAGATCCATCTGCCTCTGCCCCTCTGAGAACTGGAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGAGATCCATCTGCCTCTGCCCCTCTGAGAACTGGAACTAA  50

seq1  AAGTGTGTTCCACTTTACCTGACCAGAAAGACTGTTCTAATTGTAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTCCACTTTACCTGACCAGAAAGACTGTTCTAATTGTAACATT  100

seq1  ATTATCAAGCACAAATTGCAGCAAATAAGACATAAACTCTTGTAAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAGCACAAATTGCAGCAAATAAGACATAAACTCTTGTAAATCTT  150

seq1  TAATTCTAGCTGTTGGGAGTCAGAGGCAATGGGTGCGACTGTGGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGCTGTTGGGAGTCAGAGGCAATGGGTGCGACTGTGGTGTGAT  200

seq1  ATGTATCTTTGTGAGTTAGAGGCTAGCCTGGATTATCTACATAGTAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTTGTGAGTTAGAGGCTAGCCTGGATTATCTACATAGTAAGTT  250

seq1  CCAGGCCAACCTGGGCTACATAGTGAGACCTTGTATAAAACAGCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAACCTGGGCTACATAGTGAGACCTTGTATAAAACAGCTAATAA  300

seq1  TATGTATTCTCAAGATGTTTTCATGGAAACAGCCATGTACCTGTGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCTCAAGATGTTTTCATGGAAACAGCCATGTACCTGTGATGAC  350

seq1  ATATCACTATAAAATTTGTTTGAAATTAGAAAGGCAAAAAAATGCATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTATAAAATTTGTTTGAAATTAGAAAGGCAAAAAAATGCATAAT  400

seq1  GAAAACCGTTTGTTACTAGATAATTAAAATTGCATGGCTTTAGATCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCGTTTGTTACTAGATAATTAAAATTGCATGGCTTTAGATCTCAT  450

seq1  AGCATTTCCCACAAACACTGCGTTTCGCCCTTGTCCTGGAAACGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCCCACAAACACTGCGTTTCGCCCTTGTCCTGGAAACGTGCAGG  500

seq1  CTCAGCTTCACCTGGTCAGCATTCTTGCAAGGCTATGTTCACCCGGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTCACCTGGTCAGCATTCTTGCAAGGCTATGTTCACCCGGGGCT  550

seq1  GAGTGGCAGATGGCCTCTGCAGTCTTCCACGGCCCCGGTCCGTCACCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCAGATGGCCTCTGCAGTCTTCCACGGCCCCGGTCCGTCACCATC  600

seq1  ACCTTTCTTCTCTCTCCCAGCTTGCCTTCCTGGTTCACGCTCACTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTCTCTCTCCCAGCTTGCCTTCCTGGTTCACGCTCACTCACAG  650

seq1  ACTTCTGTTGACATTTGAAATTGTGATGCCGGACGAGGTCCAATCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTGACATTTGAAATTGTGATGCCGGACGAGGTCCAATCCTTTC  700

seq1  TAAACACAGTCAGGCCTTTTGCAGGACGCTTTCTGCTTGAACACATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGTCAGGCCTTTTGCAGGACGCTTTCTGCTTGAACACATTTAC  750

seq1  AAGGCAGCTCTGCTCTTTAGGTGACCCGTGCTAGAGCTGCACACTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTCTGCTCTTTAGGTGACCCGTGCTAGAGCTGCACACTCTTTA  800

seq1  GTTTCCTGCCGCCAAGCTTTTTCTTACGCTGATCCTCAATGTGTTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCCGCCAAGCTTTTTCTTACGCTGATCCTCAATGTGTTTCTTA  850

seq1  TAACTCTGAATCTCCCCGACGTCTGTCTTAAAGTCAAAGGTGTCTTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGAATCTCCCCGACGTCTGTCTTAAAGTCAAAGGTGTCTTTGCT  900

seq1  TCCGCTTTGTGTGCTTGCATCTCCCAATGCACCTGTCAGACGGTGGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTTTGTGTGCTTGCATCTCCCAATGCACCTGTCAGACGGTGGTAAA  950

seq1  AGCGGTATGAAGACAGAGGAGCTCTCGGCTTGACCCTGAGCGTCCCTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCGGTATGAAGACAGAGGAGCTCTCGGCTTGACCCTGAGCGT-CCTTGC  999

seq1  GCTCGGCTGCA-TTTTTTCTTCTTCAGTTCTCTAGATTTATTAAATTAAA  1049
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GCTCGGCTGCATTTTTTTCTTCTTCAGTTCTCTAGATTTA-TAAATTAAA  1048

seq1  C-TCTTCATTTGGAGTCAATTGCAAATTCATATTCAGTTGTAATAAATAC  1098
      | ||||||||| ||||| |||||||||||||||||||| |||||||||||
seq2  CTTCTTCATTT-GAGTC-ATTGCAAATTCATATTCAGTGGTAATAAATAC  1096

seq1  TACAG-ACCAGCC--TTGTGTTTTCCTTATTC  1127
      ||||| |||||||  | ||||||| |||||||
seq2  TACAGAACCAGCCCTTGGTGTTTT-CTTATTC  1127


seq1: chr2_78115938_78117015
seq2: B6Ng01-236H17.g_61_1128 (reverse)

seq1  AAATACACAATATTGTGGCCTCTGGTCCTGAAATAAAAATACTGGTTTGA  50
      |||||||||||||||||| |||||   |||||||||||||||||||||||
seq2  AAATACACAATATTGTGG-CTCTG--TCTGAAATAAAAATACTGGTTTGA  47

seq1  TTAAATGCCAGTTGGTTGTAAACGATAACCCACATAAACAGTAGGAAATC  100
      || |||| ||||||  |||||||||| ||| |||||||||||||||||||
seq2  TT-AATG-CAGTTG--TGTAAACGAT-ACCAACATAAACAGTAGGAAATC  92

seq1  ATTACGCTTAAGCAGTGAATTCTAATTTAATTTTATGGCCTTTGGAAAGA  150
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  A-TACGCTTAAGCAGTGAATTCTAATTTAATTTTATGGCC-TTGGAAAGA  140

seq1  AATCCCTCAGGCCAGTGAGCAGAAGCCAAGCAATGGTGACTGTGCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCAGGCCAGTGAGCAGAAGCCAAGCAATGGTGACTGTGCTGGGG  190

seq1  ATTCCAGGATTCCAGCTCTGTTGGGCCAGCTCTGGGGTGCCCTAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGATTCCAGCTCTGTTGGGCCAGCTCTGGGGTGCCCTAGCCCTG  240

seq1  CCCAGGGTAACCATCCACATCCGTTCTTTCCACTGTTCTTCTGATGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTAACCATCCACATCCGTTCTTTCCACTGTTCTTCTGATGGGGT  290

seq1  CATTTTATGGTTTGTCCATACCCGTGAATTTTCCCATTTTAAGTCTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGGTTTGTCCATACCCGTGAATTTTCCCATTTTAAGTCTATGT  340

seq1  GTTTCATCTGTTTTATTGCTGCATTTAGAATGCCCCCACGAACTAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTGTTTTATTGCTGCATTTAGAATGCCCCCACGAACTAAGTAC  390

seq1  TTCTACACCACCATTTAATTCTATGTAACCGGTTTTCTGCACCCCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACCACCATTTAATTCTATGTAACCGGTTTTCTGCACCCCTTCTT  440

seq1  TGTAAGAAAGAGAATTTCCACATTTTATTGTGTGCGTGCCATACCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAAGAGAATTTCCACATTTTATTGTGTGCGTGCCATACCTTTTG  490

seq1  CTTGTCATATTTACTTTGAAAGTCTTTTCTTTTAAACATTTATTCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATATTTACTTTGAAAGTCTTTTCTTTTAAACATTTATTCTCTGA  540

seq1  CAGTGTCATATAAGTTTTGATGTAACTGGATCATATACTCTTGTTAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATATAAGTTTTGATGTAACTGGATCATATACTCTTGTTAGTCT  590

seq1  CGTACTCCCCTCTCACTTCTGCTAAATGTCTGCTTGCCCCTAATAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCCCCTCTCACTTCTGCTAAATGTCTGCTTGCCCCTAATAAATCC  640

seq1  CCCTCCTATTTTCATGGTTTTTAAAAGGGTTTGTGATTCATTGAATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTATTTTCATGGTTTTTAAAAGGGTTTGTGATTCATTGAATTTAT  690

seq1  TAGGGTTGCTCACATGAGCATATGAGGAAGAGTGTTTACTGGAGCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGCTCACATGAGCATATGAGGAAGAGTGTTTACTGGAGCATGTG  740

seq1  GAACTAGCAGGTGGCTATACCAGAGAAGAAAGTGTCCCACACCAGCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCAGGTGGCTATACCAGAGAAGAAAGTGTCCCACACCAGCCCTT  790

seq1  AACAGTCAACATGTCCTTAAGGAGAGCTGGGGCCTCTACTTTCTCCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAACATGTCCTTAAGGAGAGCTGGGGCCTCTACTTTCTCCCTCA  840

seq1  GCCCCAAGGAGAAGGCAATAGGATCTGAGCAGAAAAATCACTGCTGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGGAGAAGGCAATAGGATCTGAGCAGAAAAATCACTGCTGCTGT  890

seq1  GATTTTGTGAGCAGATTGTCATGTCTTGTTTAGGACGTGGCTCCTTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTGAGCAGATTGTCATGTCTTGTTTAGGACGTGGCTCCTTTGTC  940

seq1  CCTCTCATCGGTTCCTACACTCCTGCTGCTGCTTCTCACTGAATGTCCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCGGTTCCTACACTCCTGCTGCTGCTTCTCACTGAATGTCCCC  990

seq1  AATGCTTTAGAGGTGGTATAGACATGTACTATTTAGGGCTAAGTTTGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTAGAGGTGGTATAGACATGTACTATTTAGGGCTAAGTTTGCAT  1040

seq1  ATGTAATCATTTGATTTGAGAGGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  ATGTAATCATTTGATTTGAGAGGAATTC  1068


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