BAC Information

Click to search

BAC

Clone NameB6Ng01-237M05
Chromosome2 (Build37)
Map Location 69,114,234 - 69,245,854
singlet/doubletdoublet
Overlap geneAbcb11, Dhrs9
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2
Downstream geneLrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237M05.bB6Ng01-237M05.g
ACCGA048634GA048635
length1,165994
definitionB6Ng01-237M05.b B6Ng01-237M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,244,690 - 69,245,854)(69,114,234 - 69,115,257)
sequence
gaattcattgttgcagaatccatgagtataagataagtacatacacagtg
gaactaccatgcctctcaggttgtgagctgctccaagaatatttccagct
tccttttcctgtgtgtattagtcagaattttactgctgtgaacagacacc
atgaccaaggcaagtcttataaaggacagcatttaattggggctggcttg
caggtctagaggtttggtctagtatcatcaaggcaagaacatggcagcat
ccaggcaggcatggtagaggagctgagagttctacatcttcatctgaagg
ctgatagcagaatactgactttcaggaagctaggactagggtattaaagc
ccactctcacagtgacacacctactccaacaaggccacatctcttaatag
ggccactccctggctcaagcatatacaaaccatcatcacactgtgctaac
tttggggcttcctctaaagaaggtcagaagttagtttaaccttgcgaaga
tttctattccatcccctttcagaaccacagacttttctcctattggaggc
taaggtaagctttcatgcttggaggaataatacttcacatcttatgacag
ctgggatgagagatgtctggaatgttgttcccttaggcttcagaatctag
aaattctagctatttaagtccaggcatacaccataccggaggaaagcccc
tctggcagggatagaatcagagggattaagaatctatttcatcagagaca
gcagctccacccatctttcttcactcccctttttagcatcctagtgtccc
agattagcctttgagtctatgctcactcacagtagctgacatctgtcaac
ccacgggtacaaaaaatgttgaacttgcaatgttgaacttgaaccccatg
cagcttccgcccatggccctcattctactgtgtgtcctccttccagtgag
ctattctgtctctcgatttttcctcctaagagaatcgccccagcttcttc
agctcttcttgcacttggacttcagctaaccctcctctcctgtggacagt
gaatgcagttattttatggagtacgctcccagaattgctcttgacatgta
agagttaagtagcctaataagactttgccaccttcctctgcagcccgttt
agttaatttaggcca
gaattcagctggaccttgtagatttaattgttaagatactttgaaaagca
aaaaccaagccacatactctcattcagtgctctttagttaaaatttctat
aaaaagcaagaaatggaaattccattagccaaattatattgttttctttt
aaatttttaattccactcaaaaggattctgatatagttactatataccca
agaaatatcagggaaatggcagatcatttcattttggggcttgaacaatg
gatcagcttctcaacacctttttttctgttttttatttttatctctttta
ctaggaaaaatataaaatggccacttttaaaagctgtactaggcaacagt
caaatgatctcaattgttttcttcctagttctatgaacataaatgaaacc
gttaattctggccccccaaagaggagatgtgtttctagtgtcaagatgca
ggtaagagtcatgcttacatcttatgttccctctttctgattcaccctga
gaaagagggctctcaggtatttacagaaatgagtttactcaacagtgaga
cctctatttgatgttaatagaacaagacaggagagagtctcaatgaccca
tctttcacagggtatcattcaagaatttgtcccaaatttctcctttgtag
actagtgcatgtaatgatgtcttaatgaattcgcaagttgggattttatt
gaggacattttgaaattacgtcatgcatatagatgtacttgtaattaaag
tattctttggcttatttgatttgatacatagagatgtgagcttcatttta
tccacagaaacctccattttttcattcaatcaaacaagcaaacaaaacct
cttgtgccctgcttataaagcacctggctatcctggtggcgacctcacca
cagatatgatggcaggagtcttaggatctaaattatagagaggaaggcat
gattcactagatcatgaggattcatgacgccatgtagggatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69244690_69245854
seq2: B6Ng01-237M05.b_41_1205 (reverse)

seq1  TGGCCTAAAATTTAACTAAACAGCCTGCAGAAGAAGGTTGGCAAAGTC-T  49
      |||||||||  |||||||||| | ||||||| ||||| |||||||||| |
seq2  TGGCCTAAA--TTAACTAAACGGGCTGCAGAGGAAGG-TGGCAAAGTCTT  47

seq1  ATTA-GCTACTT-ACTCTTACATGTTCAGAGCATTCTTGGGAGCCCTACT  97
      |||| ||||||| ||||||||||||  |||||| |  |||||| | ||||
seq2  ATTAGGCTACTTAACTCTTACATGTCAAGAGCAATTCTGGGAG-CGTACT  96

seq1  -CAT-AAATAACTGCATTCACTGTCCACAGGAGAGGAGGGTTAGCTGAAG  145
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATAACTGCATTCACTGTCCACAGGAGAGGAGGGTTAGCTGAAG  146

seq1  TCCAAGTGC-AGAAGAGCTGAAGAAGCTGGGGCGATTCTCTTAGGAGGAA  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGCAAGAAGAGCTGAAGAAGCTGGGGCGATTCTCTTAGGAGGAA  196

seq1  AAATCGAGGAGACAGAATAGCTCACTGGAAGGAGGACACACAGTAGAATG  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGA-GAGACAGAATAGCTCACTGGAAGGAGGACACACAGTAGAATG  245

seq1  AGGGCCATGGGCGGAAGCTGCATGGGGTTCAAGTTCAACATTGCAAGTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATGGGCGGAAGCTGCATGGGGTTCAAGTTCAACATTGCAAGTTC  295

seq1  AACATTTTTTGTACCCGTGGGTTGACAGATGTCAGCTACTGTGAGTGAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTGTACCCGTGGGTTGACAGATGTCAGCTACTGTGAGTGAGC  345

seq1  ATAGACTCAAAGGCTAATCTGGGACACTAGGATGCTAAAAAGGGGAGTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCAAAGGCTAATCTGGGACACTAGGATGCTAAAAAGGGGAGTGA  395

seq1  AGAAAGATGGGTGGAGCCTGCTGTCTCTGATGAAATAGATTCTTAATCCC  444
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAGATGGGTGGAG-CTGCTGTCTCTGATGAAATAGATTCTTAATCCC  444

seq1  TCTGATTCTATCCCTGCCAGAGGGGCTTTCCTCCGGTATGGTGTATGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTATCCCTGCCAGAGGGGCTTTCCTCCGGTATGGTGTATGCCT  494

seq1  GGACTTAAATAGCTAGAATTTCTAGATTCTGAAGCCTAAGGGAACAACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAAATAGCTAGAATTTCTAGATTCTGAAGCCTAAGGGAACAACAT  544

seq1  TCCAGACATCTCTCATCCCAGCTGTCATAAGATGTGAAGTATTATTCCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACATCTCTCATCCCAGCTGTCATAAGATGTGAAGTATTATTCCTC  594

seq1  CAAGCATGAAAGCTTACCTTAGCCTCCAATAGGAGAAAAGTCTGTGGTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGAAAGCTTACCTTAGCCTCCAATAGGAGAAAAGTCTGTGGTTC  644

seq1  TGAAAGGGGATGGAATAGAAATCTTCGCAAGGTTAAACTAACTTCTGACC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGATGGAATAGAAATCTTCGCAAGGTTAAACTAACTTCTGACC  694

seq1  TTCTTTAGAGGAAGCCCCAAAGTTAGCACAGTGTGATGATGGTTTGTATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAGGAAGCCCCAAAGTTAGCACAGTGTGATGATGGTTTGTATA  744

seq1  TGCTTGAGCCAGGGAGTGGCCCTATTAAGAGATGTGGCCTTGTTGGAGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGCCAGGGAGTGGCCCTATTAAGAGATGTGGCCTTGTTGGAGTA  794

seq1  GGTGTGTCACTGTGAGAGTGGGCTTTAATACCCTAGTCCTAGCTTCCTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCACTGTGAGAGTGGGCTTTAATACCCTAGTCCTAGCTTCCTGA  844

seq1  AAGTCAGTATTCTGCTATCAGCCTTCAGATGAAGATGTAGAACTCTCAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTATTCTGCTATCAGCCTTCAGATGAAGATGTAGAACTCTCAGC  894

seq1  TCCTCTACCATGCCTGCCTGGATGCTGCCATGTTCTTGCCTTGATGATAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCATGCCTGCCTGGATGCTGCCATGTTCTTGCCTTGATGATAC  944

seq1  TAGACCAAACCTCTAGACCTGCAAGCCAGCCCCAATTAAATGCTGTCCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAACCTCTAGACCTGCAAGCCAGCCCCAATTAAATGCTGTCCTT  994

seq1  TATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAATTCTGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAATTCTGA  1044

seq1  CTAATACACACAGGAAAAGGAAGCTGGAAATATTCTTGGAGCAGCTCACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACACACAGGAAAAGGAAGCTGGAAATATTCTTGGAGCAGCTCACA  1094

seq1  ACCTGAGAGGCATGGTAGTTCCACTGTGTATGTACTTATCTTATACTCAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAGGCATGGTAGTTCCACTGTGTATGTACTTATCTTATACTCAT  1144

seq1  GGATTCTGCAACAATGAATTC  1165
      |||||||||||||||||||||
seq2  GGATTCTGCAACAATGAATTC  1165

seq1: chr2_69114234_69115257
seq2: B6Ng01-237M05.g_62_1055

seq1  GAATTCAGCTGGACCTTGTAGATTTAATTGTTAAGATACTTTGAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGACCTTGTAGATTTAATTGTTAAGATACTTTGAAAAGCA  50

seq1  AAAACCAAGCCACATACTCTCATTCAGTGCTCTTTAGTTAAAATTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGCCACATACTCTCATTCAGTGCTCTTTAGTTAAAATTTCTAT  100

seq1  AAAAAGCAAGAAATGGAAATTCCATTAGCCAAATTATATTGTTTTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAGAAATGGAAATTCCATTAGCCAAATTATATTGTTTTCTTTT  150

seq1  AAATTTTTAATTCCACTCAAAAGGATTCTGATATAGTTACTATATACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAATTCCACTCAAAAGGATTCTGATATAGTTACTATATACCCA  200

seq1  AGAAATATCAGGGAAATGGCAGATCATTTCATTTTGGGGCTTGAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCAGGGAAATGGCAGATCATTTCATTTTGGGGCTTGAACAATG  250

seq1  GATCAGCTTCTCAACACCTTTTTTTCTGTTTTTTATTTTTATCTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTTCTCAACACCTTTTTTTCTGTTTTTTATTTTTATCTCTTTTA  300

seq1  CTAGGAAAAATATAAAATGGCCACTTTTAAAAGCTGTACTAGGCAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAAATATAAAATGGCCACTTTTAAAAGCTGTACTAGGCAACAGT  350

seq1  CAAATGATCTCAATTGTTTTCTTCCTAGTTCTATGAACATAAATGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATCTCAATTGTTTTCTTCCTAGTTCTATGAACATAAATGAAACC  400

seq1  GTTAATTCTGGCCCCCCAAAGAGGAGATGTGTTTCTAGTGTCAAGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCTGGCCCCCCAAAGAGGAGATGTGTTTCTAGTGTCAAGATGCA  450

seq1  GGTAAGAGTCATGCTTACATCTTATGTTCCCTCTTTCTGATTCACCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGTCATGCTTACATCTTATGTTCCCTCTTTCTGATTCACCCTGA  500

seq1  GAAAGAGGGCTCTCAGGTATTTACAGAAATGAGTTTACTCAACAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGGCTCTCAGGTATTTACAGAAATGAGTTTACTCAACAGTGAGA  550

seq1  CCTCTATTTGATGTTAATAGAACAAGACAGGAGAGAGTCTCAATGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTGATGTTAATAGAACAAGACAGGAGAGAGTCTCAATGACCCA  600

seq1  TCTTTCACAGGGTATCATTCAAGAATTTGTCCCAAATTTCTCCTTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACAGGGTATCATTCAAGAATTTGTCCCAAATTTCTCCTTTGTAG  650

seq1  ACTAGTGCATGTAATGATGTCTTAATGAATTCGCAAGTTGGGATTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCATGTAATGATGTCTTAATGAATTCGCAAGTTGGGATTTTATT  700

seq1  GAGGACATTTTGAAATTACGTCATGCATAATAGATGTACTTGTAATTAAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGACATTTTGAAATTACGTCATGCAT-ATAGATGTACTTGTAATTAAA  749

seq1  GTATTCTTTGGCTTATTTGATTTGATACATAGAAGAATGTGAGCTTCATT  800
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  GTATTCTTTGGCTTATTTGATTTGATACATAGA--GATGTGAGCTTCATT  797

seq1  TTAATCACAGAAA-CTCCATTTTTTCATTCCAAATCAAACAAGCAAACAA  849
      |||  |||||||| ||||||||||||||||  |||||||||||||||| |
seq2  TTATCCACAGAAACCTCCATTTTTTCATTC--AATCAAACAAGCAAAC-A  844

seq1  AAACCTCTTGTTGCCCTGCTTAATAAAGGCACTGGGCTAATCCT-GTGGC  898
      |||||||||| |||||||||| ||||| ||||  |||| ||||| |||||
seq2  AAACCTCTTG-TGCCCTGCTT-ATAAA-GCACCTGGCT-ATCCTGGTGGC  890

seq1  GA-CTCAACACAGATATGAAGGGCCAGGGAGTCTAAGGAGTCTAAAATTT  947
      || |||| ||||||||||| ||  || ||||||| |||| |||||| | |
seq2  GACCTCACCACAGATATGATGG--CA-GGAGTCTTAGGA-TCTAAATTAT  936

seq1  AATAAGAGAAGAGAGCATGGATTCCAAACTTAAGAATTCCATGAAGGAGT  997
          ||||| ||  |||| |||||   |||  |||    |||| ||||  
seq2  ----AGAGAGGAAGGCAT-GATTC---ACT--AGA---TCATG-AGGA--  970

seq1  TTCAATGAACGCCATGTAGGGGATCAA  1024
      ||| ||| |||||||||| ||||||||
seq2  TTC-ATG-ACGCCATGTA-GGGATCAA  994