BAC Information

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BAC

Clone NameB6Ng01-237P06
Chromosome2 (Build37)
Map Location 8,232,310 - 8,337,793
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream geneLOC100040710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P06.bB6Ng01-237P06.g
ACCGA048777GA048778
length1,0771,132
definitionB6Ng01-237P06.b B6Ng01-237P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,232,310 - 8,233,386)(8,336,644 - 8,337,793)
sequence
gaattctttcttgttcttttattagtctgcttgaagctagtatgtacttt
gtcagtttctcactatccttctcacacagtgtattctccttccccaactc
tcaccgaccaactccacacccctctttctcctctctctccctcccccctt
ccccttcctttttctgtctccctccccctcctgccctccctttcctctcc
cctctctctctctccatacagcaagtagacaaaaactcagagttttaaaa
agacatgaaatccacacacatagacatgtgcacacacacacacacccctt
taaaaaatcagaaattttaataaccaggtaaaagttctgtaagataaaag
aaaaaagtaagttattacttgaacaaagtaatgtaagccaaaagtactac
aaaattaccatggtgtttatttgtgttggccatcagctgctgcacatggg
ggataccctcaagtttgtttaatatatacagcaaattgaaaaaaattttc
ttggatagaggtggaagtcagtgtccacagggaagctatcttgcttaaac
ctgtgcagactgactactggcttccacagatgtgtccggaaaacactgtt
tcattggtgttgatctcctctatcttgacaatctttccatgttgttctct
atatagttccttaagcccaaaaatggatgattacatcacattttggaata
agtattccccccctctcaatctgtacatttttcagttgtggctctttatg
ttagtatcttctctgataatggctaactgtgtcactgaaattttggtaga
gtagaatattattagaaatcattttcctattttgtttagaaacatttttt
tatttgcctagacaaatggtctatttagtttcaggttctgagcaactcaa
gcagtgtcagcatgaattgcatctcatagtgtggggctgcatttgagaga
gttatgtcactattgcacacatgtaccatgtagtctgggtctctttatag
atcataggatttgtatgtatgtgttgttaccattctctctgattgtatac
agaatatccaccccatattgtgaatac

gaattccaggaagtatggagggtgttcaggaaacgatgaagcaaactcac
agaacaccagagagaactatttggcagtttagcagagcactatctagtct
ccaatttgagctataaccacaacaaggggcagggggatgtaagtccctct
ccttaggctttgacgcttttttggctgctcatgaggtgagatggataaca
cattgctgtttttgttgatcaccagtgttcagaatttaaactttgactat
aatataaattgaaggagattgacttttccatactaaaaagcatttgaagc
ataatgcctcccaaaaatatttctgatgatacacaagaggaggtctcact
caagtctgtactgaatgctagcttacagaatggtgagccatgaacttttt
aactcttagtctatctgtgaacttaaactacagtgctcatgtcaaggacc
aagtcagactcagaatgatacccaatttgggaatccaattcttatgcacc
attccagttttagtatctgatgcaaaaaataagcaaaaaattcactgata
taaagatttagataaggctgaaatctatcgttgccttccatccaaggtgg
ttctataatgaggtaagtttttcaagaggaaattagatttaaaaaaaaga
agaaggaagaggaggaggaggaggctgcataagtacacagagaaaatttc
agagctgagtgagccttattttcaaaattaaatagaaaggtggctgggag
aatggcccagggagaaaggcccttgccacaaattcttagtgccttaagtt
cagttctcagttccataaagtgaaaagaaaaaagaaaaaagaaaaagaaa
agaatatccacagctacctattattacaacaactaatcttgcaacaaata
aaaaaaaaaacagagatgtacaaaaatatacatagggactgaaagtagga
gatagaagatgctgcagacctcaccagctggcttagctccagattgactg
acaaccctgtttcaagagactaggagacaaagcagtagagaaagacactc
actctacttttcctcatatgtgcatctggtatcacatacctcatatgcat
ataaaccacatgcaatctgaccacacaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_8232310_8233386
seq2: B6Ng01-237P06.b_46_1122

seq1  GAATTCTTTCTTGTTCTTTTATTAGTCTGCTTGAAGCTAGTATGTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGTTCTTTTATTAGTCTGCTTGAAGCTAGTATGTACTTT  50

seq1  GTCAGTTTCTCACTATCCTTCTCACACAGTGTATTCTCCTTCCCCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCTCACTATCCTTCTCACACAGTGTATTCTCCTTCCCCAACTC  100

seq1  TCACCGACCAACTCCACACCCCTCTTTCTCCTCTCTCTCCCTCCCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGACCAACTCCACACCCCTCTTTCTCCTCTCTCTCCCTCCCCCCTT  150

seq1  CCCCTTCCTTTTTCTGTCTCCCTCCCCCTCCTGCCCTCCCTTTCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTTTTTCTGTCTCCCTCCCCCTCCTGCCCTCCCTTTCCTCTCC  200

seq1  CCTCTCTCTCTCTCCATACAGCAAGTAGACAAAAACTCAGAGTTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCCATACAGCAAGTAGACAAAAACTCAGAGTTTTAAAA  250

seq1  AGACATGAAATCCACACACATAGACATGTGCACACACACACACACCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAATCCACACACATAGACATGTGCACACACACACACACCCCTT  300

seq1  TAAAAAATCAGAAATTTTAATAACCAGGTAAAAGTTCTGTAAGATAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCAGAAATTTTAATAACCAGGTAAAAGTTCTGTAAGATAAAAG  350

seq1  AAAAAAGTAAGTTATTACTTGAACAAAGTAATGTAAGCCAAAAGTACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAAGTTATTACTTGAACAAAGTAATGTAAGCCAAAAGTACTAC  400

seq1  AAAATTACCATGGTGTTTATTTGTGTTGGCCATCAGCTGCTGCACATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCATGGTGTTTATTTGTGTTGGCCATCAGCTGCTGCACATGGG  450

seq1  GGATACCCTCAAGTTTGTTTAATATATACAGCAAATTGAAAAAAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTCAAGTTTGTTTAATATATACAGCAAATTGAAAAAAATTTTC  500

seq1  TTGGATAGAGGTGGAAGTCAGTGTCCACAGGGAAGCTATCTTGCTTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGAGGTGGAAGTCAGTGTCCACAGGGAAGCTATCTTGCTTAAAC  550

seq1  CTGTGCAGACTGACTACTGGCTTCCACAGATGTGTCCGGAAAACACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGACTGACTACTGGCTTCCACAGATGTGTCCGGAAAACACTGTT  600

seq1  TCATTGGTGTTGATCTCCTCTATCTTGACAATCTTTCCATGTTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTGTTGATCTCCTCTATCTTGACAATCTTTCCATGTTGTTCTCT  650

seq1  ATATAGTTCCTTAAGCCCAAAAATGGATGATTACATCACATTTTGGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCCTTAAGCCCAAAAATGGATGATTACATCACATTTTGGAATA  700

seq1  AGTATTCCCCCCCTCTCAATCTGTACATTTTTCAGTTGTGGCTCTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCCCCCCTCTCAATCTGTACATTTTTCAGTTGTGGCTCTTTATG  750

seq1  TTAGTATCTTCTCTGATAATGGCTAACTGTGTCACTGAAATTTTGGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTTCTCTGATAATGGCTAACTGTGTCACTGAAATTTTGGTAGA  800

seq1  GTAGAATATTATTAGAAATCATTTTCCTATTTTGTTTAGAAACA-TTTTT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTAGAATATTATTAGAAATCATTTTCCTATTTTGTTTAGAAACATTTTTT  850

seq1  TATTTGCCTAGACAAATGGTCTATTTAGTTTCAGGTTCTGAGCAACTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCTAGACAAATGGTCTATTTAGTTTCAGGTTCTGAGCAACTCAA  900

seq1  GCAGTGTCAGCATGAATTGCATCTCATAGTGT-GGGCTGCATTTGAGAGA  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAGTGTCAGCATGAATTGCATCTCATAGTGTGGGGCTGCATTTGAGAGA  950

seq1  GTTATGTCACTATTGCACACATGTACCATGTAGTCT-GGTCTCCTTTATA  997
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GTTATGTCACTATTGCACACATGTACCATGTAGTCTGGGTCT-CTTTATA  999

seq1  GATCATAGGATTTGTATGTATGTTGGTGTTTACCATTCTCCTCTGATTGT  1047
      |||||||||||||||||||||||  ||  |||||||||| ||||||||||
seq2  GATCATAGGATTTGTATGTATGT--GTTGTTACCATTCT-CTCTGATTGT  1046

seq1  ATACAGAATAT-CACCCCATATTGTGAATAC  1077
      ||||||||||| |||||||||||||||||||
seq2  ATACAGAATATCCACCCCATATTGTGAATAC  1077


seq1: chr2_8336644_8337793
seq2: B6Ng01-237P06.g_65_1196 (reverse)

seq1  TGCCTGTGTGTGG-CAGTATGTGCATGTGTGTTATATGCATATGA-GTAT  48
      ||||| ||||||| ||| || ||||||||  |||||||||||||| ||||
seq2  TGCCT-TGTGTGGTCAG-AT-TGCATGTGGTTTATATGCATATGAGGTAT  47

seq1  GTGGATACCCAAGATGCACATATGGAAGGAAAAGTAGGAAGTTGAGTGTC  98
      || ||||||  |||||||||||||  |||||||||||  || ||||||||
seq2  GT-GATACC--AGATGCACATATG--AGGAAAAGTAG--AG-TGAGTGTC  89

seq1  TTTCTCTACTGCTTTGTCTCTTAGTCTCTTGAAACAGGGTTTGTCAGTCA  148
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TTTCTCTACTGCTTTGTCTCCTAGTCTCTTGAAACAGGG-TTGTCAGTCA  138

seq1  ATCTTGGAGCTAAGCCAGCTGGTTGAGGTCTGCCAGCATCCTTCTATCTC  198
      ||| |||||||||||||||||| ||||||||| |||||| ||||||||||
seq2  ATC-TGGAGCTAAGCCAGCTGG-TGAGGTCTG-CAGCAT-CTTCTATCTC  184

seq1  CTACTTTTCAGTTCCTATGTATATTTTTGTACATTCTCTGTTTTTTTTTT  248
      |||| ||||||| |||||||||||||||||||| |||||| |||||||||
seq2  CTAC-TTTCAGTCCCTATGTATATTTTTGTACA-TCTCTG-TTTTTTTTT  231

seq1  TTATTTTGTTTGCAAGATTAGTTTGTTGTAAT-ATAGGTAGCTGTGGATA  297
      ||||||   |||||||||||| |||||||||| |||||||||||||||||
seq2  TTATTT--GTTGCAAGATTAG-TTGTTGTAATAATAGGTAGCTGTGGATA  278

seq1  TTCTTTTCTTTTTCTTTTTTCTTTTTTCTTTTCACTTTATGGAACTGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTCTTTTTTCTTTTTTCTTTTCACTTTATGGAACTGAGA  328

seq1  ACTGAACTTAAGGCACTAAGAATTTGTGGCAAGGGCC-TTCTCCCTGGGC  396
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTGAACTTAAGGCACTAAGAATTTGTGGCAAGGGCCTTTCTCCCTGGGC  378

seq1  CATTCTCCCAGCCACCTTTCTATTTAATTTTGAAAATAAGGCTCACTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCCAGCCACCTTTCTATTTAATTTTGAAAATAAGGCTCACTCAG  428

seq1  CTCTGAAATTTTCTCTGTGTACTTATGCAGCCTCCTCCTCCTCCTCTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATTTTCTCTGTGTACTTATGCAGCCTCCTCCTCCTCCTCTTCC  478

seq1  TTCTTCTTTTTTTTAAATCTAATTTCCTCTTGAAAAACTTACCTCATTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTTTTTAAATCTAATTTCCTCTTGAAAAACTTACCTCATTAT  528

seq1  AGAACCACCTTGGATGGAAGGCAACGATAGATTTCAGCCTTATCTAAATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCTTGGATGGAAGGCAACGATAGATTTCAGCCTTATCTAAATC  578

seq1  TTTATATCAGTGAATTTTTTGCTTATTTTTTGCATCAGATACTAAAACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCAGTGAATTTTTTGCTTATTTTTTGCATCAGATACTAAAACTG  628

seq1  GAATGGTGCATAAGAATTGGATTCCCAAATTGGGTATCATTCTGAGTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGCATAAGAATTGGATTCCCAAATTGGGTATCATTCTGAGTCTG  678

seq1  ACTTGGTCCTTGACATGAGCACTGTAGTTTAAGTTCACAGATAGACTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCCTTGACATGAGCACTGTAGTTTAAGTTCACAGATAGACTAAG  728

seq1  AGTTAAAAAGTTCATGGCTCACCATTCTGTAAGCTAGCATTCAGTACAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGTTCATGGCTCACCATTCTGTAAGCTAGCATTCAGTACAGA  778

seq1  CTTGAGTGAGACCTCCTCTTGTGTATCATCAGAAATATTTTTGGGAGGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGAGACCTCCTCTTGTGTATCATCAGAAATATTTTTGGGAGGCA  828

seq1  TTATGCTTCAAATGCTTTTTAGTATGGAAAAGTCAATCTCCTTCAATTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTCAAATGCTTTTTAGTATGGAAAAGTCAATCTCCTTCAATTTA  878

seq1  TATTATAGTCAAAGTTTAAATTCTGAACACTGGTGATCAACAAAAACAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGTCAAAGTTTAAATTCTGAACACTGGTGATCAACAAAAACAGC  928

seq1  AATGTGTTATCCATCTCACCTCATGAGCAGCCAAAAAAGCGTCAAAGCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTATCCATCTCACCTCATGAGCAGCCAAAAAAGCGTCAAAGCCT  978

seq1  AAGGAGAGGGACTTACATCCCCCTGCCCCTTGTTGTGGTTATAGCTCAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGGACTTACATCCCCCTGCCCCTTGTTGTGGTTATAGCTCAAA  1028

seq1  TTGGAGACTAGATAGTGCTCTGCTAAACTGCCAAATAGTTCTCTCTGGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTAGATAGTGCTCTGCTAAACTGCCAAATAGTTCTCTCTGGTG  1078

seq1  TTCTGTGAGTTTGCTTCATCGTTTCCTGAACACCCTCCATACTTCCTGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGTTTGCTTCATCGTTTCCTGAACACCCTCCATACTTCCTGGA  1128

seq1  ATTC  1150
      ||||
seq2  ATTC  1132


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