BAC Information

Click to search

BAC

Clone NameB6Ng01-238A07
Chromosome2 (Build37)
Map Location 42,340,961 - 42,469,352
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A07.bB6Ng01-238A07.g
ACCGA048824GA048825
length1,145537
definitionB6Ng01-238A07.b B6Ng01-238A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,340,961 - 42,342,107)(42,468,816 - 42,469,352)
sequence
gaattcctcttctggctttgctcaatgatggactaaaaacggtatggtaa
aataaaccctttcttccccaagttatttgggtcatggtgtttaatgaaag
caggagaaaacctaactaagacagtaaatgagaatgtttgattaaggtaa
cagagaaattttaatatgtttgcatggacaaatgtattccttttgtttga
ataattcgatatctgaagtaatatgaatttctgtgtaccattatctattt
agaaattattcttaagtagttaataactgccattctaattatatctatga
atatattctatactcacgattcttctaagtttatggttttattaaattca
ctttttttttcttttaaacgggcttagtgtccctgactaaccttgaaatc
cttgaactcctggtcttcctccttccattacctacagctgtggttattca
ttgacaccgtcacagcttcccttatacaggaagccttactatatttgcat
tagtttggatactaagtaatcgtgggcttgacagagtaacttttcattac
ttttcacatcattcatattttctacttagtatttactatatagcagaaac
acttctccttcagttatgtgttggttgatctgttttgatttctttcattg
agagtcctagagatttagtcaagagcttggtagaccacagattattactt
attcacaacgcttgatcaaagcttacagaaacatttcgaaaattagttct
ttacagatccccttttctctttaaaaagaaaaatagactgtacatttcac
tgatatttcatgagggctatgaggttttctgtggttccttgaagtgaaaa
tttacaggtgttattttcaagcttgcattctcatattagttatatgacta
ttagaactcaaaactagtgcagacagtgcactgacaatctgttacactgt
gatgagttcagtttggtgaacaagttgagcggttaaaacattgggttctg
gtatttctgacttgaaacaaaaatggaactatattgaactgtcttaacaa
ttaattttgccaagaggacaatgatattctatctttagttttcaacttaa
tggaaaatagttcctcaatctagaaatgcatttaaagtaataatt

tttgtttagtgctgtccccattttttcataatgttatttggttctctgga
gtctaacttcatgatcgaagagctaggggaagaactgaaggagctgaagg
ggatcacaatgccatgggaagaacaatattagctagctgggccacccaga
gctcccagggactaaaccaccaaccgaagtttatacatggaggaagccat
ggctccaaatatgtgtctagcagaggatggccttatcagacatcagtagg
aggggagggccttggttctaagtagatttgatgccccagcataacggatg
ctagaacagtgaggcaaaagtgggtgagtgggtggaggagaacactcata
gaggcaaatgttaggagggaggggtataggatggggctttttggagggat
aaccaggaaaatgggatatttttctgaaatggaaaccaataaaataatta
ggctaaaaaaatgaatatttttcttatttgcccctttgctaagagagcag
gtaatttatagagattacttggtaatttaaggccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42340961_42342107
seq2: B6Ng01-238A07.b_48_1192

seq1  GAATTCCTCTTCTGGCTTTGCTCAATGATGGACTAAAAACGGTATGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTGGCTTTGCTCAATGATGGACTAAAAACGGTATGGTAA  50

seq1  AATAAACCCTTTCTTCCCCAAGTTATTTGGGTCATGGTGTTTAATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTCTTCCCCAAGTTATTTGGGTCATGGTGTTTAATGAAAG  100

seq1  CAGGAGAAAACCTAACTAAGACAGTAAATGAGAATGTTTGATTAAGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAAACCTAACTAAGACAGTAAATGAGAATGTTTGATTAAGGTAA  150

seq1  CAGAGAAATTTTAATATGTTTGCATGGACAAATGTATTCCTTTTGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATTTTAATATGTTTGCATGGACAAATGTATTCCTTTTGTTTGA  200

seq1  ATAATTCGATATCTGAAGTAATATGAATTTCTGTGTACCATTATCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCGATATCTGAAGTAATATGAATTTCTGTGTACCATTATCTATTT  250

seq1  AGAAATTATTCTTAAGTAGTTAATAACTGCCATTCTAATTATATCTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTCTTAAGTAGTTAATAACTGCCATTCTAATTATATCTATGA  300

seq1  ATATATTCTATACTCACGATTCTTCTAAGTTTATGGTTTTATTAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTATACTCACGATTCTTCTAAGTTTATGGTTTTATTAAATTCA  350

seq1  CTTTTTTTTTCTTTTAAACGGGCTTAGTGTCCCTGACTAACCTTGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTCTTTTAAACGGGCTTAGTGTCCCTGACTAACCTTGAAATC  400

seq1  CTTGAACTCCTGGTCTTCCTCCTTCCATTACCTACAGCTGTGGTTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCCTGGTCTTCCTCCTTCCATTACCTACAGCTGTGGTTATTCA  450

seq1  TTGACACCGTCACAGCTTCCCTTATACAGGAAGCCTTACTATATTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCGTCACAGCTTCCCTTATACAGGAAGCCTTACTATATTTGCAT  500

seq1  TAGTTTGGATACTAAGTAATCGTGGGCTTGACAGAGTAACTTTTCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGATACTAAGTAATCGTGGGCTTGACAGAGTAACTTTTCATTAC  550

seq1  TTTTCACATCATTCATATTTTCTACTTAGTATTTACTATATAGCAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATCATTCATATTTTCTACTTAGTATTTACTATATAGCAGAAAC  600

seq1  ACTTCTCCTTCAGTTATGTGTTGGTTGATCTGTTTTGATTTCTTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTCAGTTATGTGTTGGTTGATCTGTTTTGATTTCTTTCATTG  650

seq1  AGAGTCCTAGAGATTTAGTCAAGAGCTTGGTAGACCACAGATTATTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTAGAGATTTAGTCAAGAGCTTGGTAGACCACAGATTATTACTT  700

seq1  ATTCACAACGCTTGATCAAAGCTTACAGAAACATTTCGAAAATTAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACGCTTGATCAAAGCTTACAGAAACATTTCGAAAATTAGTTCT  750

seq1  TTACAGATCCCCTTTTCTCTTTAAAAAGAAAAATAGACTGTACATTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATCCCCTTTTCTCTTTAAAAAGAAAAATAGACTGTACATTTCAC  800

seq1  TGATATTTCATGAGGGCTATGAGGTTTTCTGTGGTTCCTTGAAGTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTCATGAGGGCTATGAGGTTTTCTGTGGTTCCTTGAAGTGAAAA  850

seq1  TTTACAGGTGTTATTTTCAAGCTTGCATTCTCAATATTAGTTATATGACT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTACAGGTGTTATTTTCAAGCTTGCATTCTC-ATATTAGTTATATGACT  899

seq1  ATTAGAACTCAAAACTAGTGCAGGACAGTGCACTGACAATCTGTTACACT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTAGAACTCAAAACTAGTGCA-GACAGTGCACTGACAATCTGTTACACT  948

seq1  GTGATGAGTTCAGTTTTGGTGAACAAGTTGAGCGGTTAAAACATT-GGTT  999
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GTGATGAGTTCAG-TTTGGTGAACAAGTTGAGCGGTTAAAACATTGGGTT  997

seq1  CTGGGTATTCTGACTTGAAACAAAAATGGAACTATATTGAACTGTCTTAA  1049
      ||||   ||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGTATTTCTGACTTGAAACAAAAATGGAACTATATTGAACTGTCTT-A  1046

seq1  ACATTTAAATTTTTGCCAGGAAGGACAATGAATATTCTATCTTTAGTTTT  1099
      ||| ||||  |||||||| | ||||||||| ||||||||||||||| |||
seq2  ACAATTAA--TTTTGCCAAG-AGGACAATG-ATATTCTATCTTTAG-TTT  1091

seq1  TCAACTTATATGAAATAT-GTTCCTCAATCTAG-AATGCATT-----TTA  1142
      |||||||| ||| || || |||||||||||||| ||||||||     | |
seq2  TCAACTTA-ATGGAAAATAGTTCCTCAATCTAGAAATGCATTTAAAGTAA  1140

seq1  TAATT  1147
      |||||
seq2  TAATT  1145


seq1: chr2_42468816_42469352
seq2: B6Ng01-238A07.g_67_609 (reverse)

seq1  ATTGGCCTT-AATTACCAAGT-ATCTCTAT-AATTACCTGCTCTCTTAGC  47
      ||||||||| ||||||||||| |||||||| |||||||||||||||||||
seq2  ATTGGCCTTAAATTACCAAGTAATCTCTATAAATTACCTGCTCTCTTAGC  50

seq1  AAAGGGGCAAATAAGAAAAATATTCATTTTTTTAG-CTAATTATTTTATT  96
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGGGGCAAATAAGAAAAATATTCATTTTTTTAGCCTAATTATTTTATT  100

seq1  GGTTTACATTTCAG-ATGATATCCCA-TTTCCTGGTTATCCCTCCAAAAA  144
      ||||| |||||||| |  |||||||| |||||||||||||||||||||||
seq2  GGTTTCCATTTCAGAAAAATATCCCATTTTCCTGGTTATCCCTCCAAAAA  150

seq1  GCCCCATCCTATACCCCTCCCTCCTAACATTTGCCTCTATGAGTGTTCTC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCCTATACCCCTCCCTCCTAACATTTGCCTCTATGAGTGTTCTC  200

seq1  CTCCACCCACTCACCCACTTTTGCCTCACTGTTCTAGCATCCGTTATGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCACTCACCCACTTTTGCCTCACTGTTCTAGCATCCGTTATGCT  250

seq1  GGGGCATCAAATCTACTTAGAACCAAGGCCCTCCCCTCCTACTGATGTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATCAAATCTACTTAGAACCAAGGCCCTCCCCTCCTACTGATGTCT  300

seq1  GATAAGGCCATCCTCTGCTAGACACATATTTGGAGCCATGGCTTCCTCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGCCATCCTCTGCTAGACACATATTTGGAGCCATGGCTTCCTCCA  350

seq1  TGTATAAACTTCGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGTGGCCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAACTTCGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGTGGCCCA  400

seq1  GCTAGCTAATATTGTTCTTCCCATGGCATTGTGATCCCCTTCAGCTCCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTAATATTGTTCTTCCCATGGCATTGTGATCCCCTTCAGCTCCTT  450

seq1  CAGTTCTTCCCCTAGCTCTTCGATCATGAAGTTAGACTCCAGAGAACCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCCCCTAGCTCTTCGATCATGAAGTTAGACTCCAGAGAACCAA  500

seq1  ATAACATTATGAAAAAATGGGGACAGCACTAAACAAAGAATTC  537
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTATGAAAAAATGGGGACAGCACTAAACAAAGAATTC  543


| Home | SequenceCutter | Blast | Download |