BAC Information

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BAC

Clone NameB6Ng01-238G08
Chromosome2 (Build37)
Map Location 56,982,427 - 56,983,503
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2
Downstream geneLOC100041900, LOC100042910, Gpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238G08.bB6Ng01-238G08.g
ACCGA049103GA049104
length1,0881,127
definitionB6Ng01-238G08.b B6Ng01-238G08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagaggccgtgtgctccagctaggtcttgacagttaaacagta
atgggattccattgtaccctgaggatggagttcatgagattccaatgcct
agagcatgggccattttaggggaccatggttagctgatggaggatggagg
tgatgccattgaagcatccaagatgtcagagatagggagcaaagctgtta
tatgtcacctggtcagctttgactcttcagttttcttgtggtagtagaag
ggtttgttatccatgtagtaagaacattcccatccacgttaaaattttca
cctaaattaggaacttacattggctttagaactggcacgtgtgatcatgt
gaattctcccttcccttgcttagcagcagtaagccaaataaataaatagt
acatgtgtgcattgattttgtctaacaggtaagttctgtgcttaccatga
ctgaagtacgtaggggaataagttaggtgtatttatcagagatcatcata
gttaaacaacagaaactcacttcatttgaaagacaacaaactgactctta
taacatgtctagtgattcacctgtattgtcaggaacagcttgatccagct
ttaaaggggtttaatattctgacctcctcttcctctcttgtctaccattc
ccgtgttgaagatatgtcaatttaccctctcccatgttgaagtgtagaga
acagaacgtgatatctctctctctcatggttcctgcatgggtttaacttg
tcgatttggcttatcaagtcctggccagttgggaaatggattaagcgtta
ccttttgattcaaatgatttcgggcattggtgtagcatttgcatgatggt
gcctcacaggaacacaccttggatgctcgaatcatgaagatcatgggaac
tctttgctaaatctaaccctgggctccttcttccataattactcgtttga
gatatccagctcctgaatgacttgtttgtccctttaggtacctggatatc
ctgtgcagttcatttgtaacttctggtcgcaggccctttctaggtgcgag
aaatccttatccctgcttaaggtttctttctgagatgg
gaattctttgttcagctctgagccccatttttaatgggattatttgaatt
tctggagtccagcttcttaagctctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaattctttttcaatctgttggtagccat
tttgtcttattgacagtgtcttttgccctacagaagctttgcaattttat
aaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtac
tgtttaggaatttttcccctatgcccatatcttcgaggcttttccccact
ttctcctttataaacttcagtatctctggttttatgtggaagtctttgat
ccacttagacttgagctttgtacaaggagataaaaatggatcaattggca
ttcttctacatgataactgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccaccggatggttttagctcccttgtcaaagatcaagtg
gccataggtgtttggattcatttctgggtcttcaattctattccattgat
ctacctgtctgtcactgtaccagtaccatgcaggttttatcacaattgct
ctgtagtacagctttaggtcagggatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttctttgttattccagatga
atttcaaaaatggccctttctaactcaatgaagaattgagttggaatttt
gatggagattgcattgaatctgtagattgctttcagcaggatagccattt
ttactatattaatcctgccgatccatgagcatgggagatctttccatctt
ctgagatcttcttcaatttcattcttcagagacttgaagttcttaccata
cagatctttcacatccttagttagattcacaccaaggtaatttatatttt
tttgtgacttattattgaaggtgtgttcctaatttctttctcagtccaat
tatactttgtgtagagaaagcattgattggtttgagtattttatatcagc
tactgcactgagctcgtttatccagcttaaggagaaatttaaggtcactt
ttatattactactatatccactctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56982427_56983503
seq2: B6Ng01-238G08.b_46_1133 (reverse)

seq1  CCATC-CAGAAAGAAACTTTAAGCAGGGAAAAGGATTTCTCTGCACCTAG  49
      ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||
seq2  CCATCTCAGAAAGAAACCTTAAGCAGGGATAAGGATTTCTC-GCACCTAG  49

seq1  AAAAAGGGCCCTGGCGAAACAGAAGTACAAAATGAAACTGACAAGG--AT  97
        ||||||||   ||| | |||||||   ||||| |||||   |||  ||
seq2  --AAAGGGCC--TGCG-ACCAGAAGTTACAAATG-AACTGCACAGGATAT  93

seq1  CCAGGTTACCTAAA-GGACAAACAAGTCACTCA-GAGCT-GATA-CTCAA  143
      ||||| |||||||| |||||||||||||| ||| ||||| |||| |||||
seq2  CCAGG-TACCTAAAGGGACAAACAAGTCATTCAGGAGCTGGATATCTCAA  142

seq1  AGGAGTAATTATGAAAGAA-GAGCCCCAGGGTAGACTTAGCAAAGGAGTC  192
      | ||||||||||| ||||| ||||||  || |||| |||||||||   ||
seq2  ACGAGTAATTATGGAAGAAGGAGCCCAGGGTTAGATTTAGCAAAGAGTTC  192

seq1  CCATGATC-TCATGATTCGAGCATCC-AGGTGTG-TCCTGTGAGGCACCA  239
      |||||||| ||||||||||||||||| ||||||| |||||||||||||||
seq2  CCATGATCTTCATGATTCGAGCATCCAAGGTGTGTTCCTGTGAGGCACCA  242

seq1  TCATGCAAATGCTACAC--ATG-CCGAATTCATTTGAATC-AAAGGTAAC  285
      |||||||||||||||||  ||| ||||| ||||||||||| |||||||||
seq2  TCATGCAAATGCTACACCAATGCCCGAAATCATTTGAATCAAAAGGTAAC  292

seq1  GCTT-ATCCATTTCCCAACTGGCCA-GACTTGAT-AGCCAAATCGACAAG  332
      |||| |||||||||||||||||||| |||||||| |||||||||||||||
seq2  GCTTAATCCATTTCCCAACTGGCCAGGACTTGATAAGCCAAATCGACAAG  342

seq1  TTAAA-CCATGCAGGAACCATGAGAGAGAGAGATATCACGTTCTGTTCTC  381
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCATGCAGGAACCATGAGAGAGAGAGATATCACGTTCTGTTCTC  392

seq1  TACACTTCAACATGGGAGAGGGTAAATTGACATATCTTCAACACGGGAAT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTCAACATGGGAGAGGGTAAATTGACATATCTTCAACACGGGAAT  442

seq1  GGTAGACAAGAGAGGAAGAGGAGGTCAGAATATTAAACCCCTTTAAAGCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAAGAGAGGAAGAGGAGGTCAGAATATTAAACCCCTTTAAAGCT  492

seq1  GGATCAAGCTGTTCCTGACAATACAGGTGAATCACTAGACATGTTATAAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGCTGTTCCTGACAATACAGGTGAATCACTAGACATGTTATAAG  542

seq1  AGTCAGTTTGTTGTCTTTCAAATGAAGTGAGTTTCTGTTGTTTAACTATG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTGTTGTCTTTCAAATGAAGTGAGTTTCTGTTGTTTAACTATG  592

seq1  ATGATCTCTGATAAATACACCTAACTTATTCCCCTACGTACTTCAGTCAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCTGATAAATACACCTAACTTATTCCCCTACGTACTTCAGTCAT  642

seq1  GGTAAGCACAGAACTTACCTGTTAGACAAAATCAATGCACACATGTACTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCACAGAACTTACCTGTTAGACAAAATCAATGCACACATGTACTA  692

seq1  TTTATTTATTTGGCTTACTGCTGCTAAGCAAGGGAAGGGAGAATTCACAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTGGCTTACTGCTGCTAAGCAAGGGAAGGGAGAATTCACAT  742

seq1  GATCACACGTGCCAGTTCTAAAGCCAATGTAAGTTCCTAATTTAGGTGAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACGTGCCAGTTCTAAAGCCAATGTAAGTTCCTAATTTAGGTGAA  792

seq1  AATTTTAACGTGGATGGGAATGTTCTTACTACATGGATAACAAACCCTTC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACGTGGATGGGAATGTTCTTACTACATGGATAACAAACCCTTC  842

seq1  TACTACCACAAGAAAACTGAAGAGTCAAAGCTGACCAGGTGACATATAAC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCACAAGAAAACTGAAGAGTCAAAGCTGACCAGGTGACATATAAC  892

seq1  AGCTTTGCTCCCTATCTCTGACATCTTGGATGCTTCAATGGCATCACCTC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCTCCCTATCTCTGACATCTTGGATGCTTCAATGGCATCACCTC  942

seq1  CATCCTCCATCAGCTAACCATGGTCCCCTAAAATGGCCCATGCTCTAGGC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCATCAGCTAACCATGGTCCCCTAAAATGGCCCATGCTCTAGGC  992

seq1  ATTGGAATCTCATGAACTCCATCCTCAGGGTACAATGGAATCCCATTACT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATCTCATGAACTCCATCCTCAGGGTACAATGGAATCCCATTACT  1042

seq1  GTTTAACTGTCAAGACCTAGCTGGAGCACACGGCCTCTGTGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTGTCAAGACCTAGCTGGAGCACACGGCCTCTGTGAATTC  1088