BAC Information

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BAC

Clone NameB6Ng01-238N13
Chromosome2 (Build37)
Map Location 172,947,498 - 173,103,905
singlet/doubletdoublet
Overlap geneEG619800, Pck1, Zbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N13.bB6Ng01-238N13.g
ACCGA049436GA049437
length109890
definitionB6Ng01-238N13.b B6Ng01-238N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,947,498 - 172,947,605)(173,103,020 - 173,103,905)
sequence
tctttcttccagtgtcagttccctggtgctattgattgcaggcattttcc
acctggcttagcttgccttccattttttctaaatgtctggggagtggggg
tgggggggg
gaattcaaacctttaaattcctccaacttacaaaatgtttttgtaaatct
cccccaccttttgattttgcaaagcatcccgccaaccccttcccagaact
gaacagtcctgatgcagctgagccttcctttcctttgccaagatccattt
aaaactagccaatcttgaaagactgtgaggctggggccccgcactcgtgg
ggaagagacacagttgccacctgcgttagaacaagaacaaatgaatcccc
tgccctgtcctggctttaagactgagcttatagctggagcaatggctcaa
cccttaacagtactttactgttcttccagaggacctgggttcagtttcca
gcaccctcacggtggctcacaaccatctgtaactccagttcccagaggat
cgatcaatggccttctggcctttgacataaaggacacacacgtcgcatag
acacgcacaggcaaagcattcatacatatataaaaaaataaatattaaaa
acaaaaagcaagattgagctgctatttcaaaacaaatggactaagcacct
tggaacctccctctgggaggacactgggctccgcggtggctcctccagga
aggtcacggaaggttaggcagaggaacccacttcctgggctgctctgaaa
actattctctcagcttcacctattcaccagtctattaaaaataaataaca
aaaacctgtgaaagctttccccttctttaatgacaagggacacagcccct
taaagtccttggatccctcgtgggcagggacaggtactccatcaggctgt
tgcagaactttaagcttccgtcttcctgagccttcaccgctgtgctagct
gaacccgaacactttctcttgctgtaaaatgaagccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172947498_172947605
seq2: B6Ng01-238N13.b_52_160

seq1  TCTTTCTTCCAGTGTCAGTTCCCTGGTGCTA-GGATTGCAGGCATTTTCC  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TCTTTCTTCCAGTGTCAGTTCCCTGGTGCTATTGATTGCAGGCATTTTCC  50

seq1  ACCTGGCTTAGCTTGCCTTCCATTTTTTCTAAATGTCTGGGGAGTGGGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTAGCTTGCCTTCCATTTTTTCTAAATGTCTGGGGAGTGGGGG  100

seq1  TGGGGGGGG  108
      |||||||||
seq2  TGGGGGGGG  109

seq1: chr2_173103020_173103905
seq2: B6Ng01-238N13.g_72_961 (reverse)

seq1  ATTTGGCTTCATTTTACAGCCAGAGAAAGTGTTC-GGTTCAGCTAAGCAC  49
      |||||||||||||||||||| ||||||||||||| ||||||||| |||||
seq2  ATTTGGCTTCATTTTACAGCAAGAGAAAGTGTTCGGGTTCAGCT-AGCAC  49

seq1  AGCGGTGAAGGCTCAGGAAGACGGAGCCT--AAGTTCTGC-ACAGCCTGA  96
      |||||||||||||||||||||||||  ||  ||||||||| |||||||||
seq2  AGCGGTGAAGGCTCAGGAAGACGGAAGCTTAAAGTTCTGCAACAGCCTGA  99

seq1  TGGAGTACCTGTCCCTGCCCACGAGGGATCCAAGGACTTTAAGGGGCTGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACCTGTCCCTGCCCACGAGGGATCCAAGGACTTTAAGGGGCTGT  149

seq1  GTCCCTTGTCATTAAAGAAGGGGAAAGCTTTCACAGGTTTTTGTTATTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGTCATTAAAGAAGGGGAAAGCTTTCACAGGTTTTTGTTATTTA  199

seq1  TTTTTAATAGACTGGTGAATAGGTGAAGCTGAGAGAATAGTTTTCAGAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAGACTGGTGAATAGGTGAAGCTGAGAGAATAGTTTTCAGAGC  249

seq1  AGCCCAGGAAGTGGGTTCCTCTGCCTAACCTTCCGTGACCTTCCTGGAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAGTGGGTTCCTCTGCCTAACCTTCCGTGACCTTCCTGGAGG  299

seq1  AGCCACCGCGGAGCCCAGTGTCCTCCCAGAGGGAGGTTCCAAGGTGCTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCGCGGAGCCCAGTGTCCTCCCAGAGGGAGGTTCCAAGGTGCTTA  349

seq1  GTCCATTTG-TTTGAAATAGCAGCTCAATCTTGCTTTTTGTTTTTAATAT  395
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGTTTTGAAATAGCAGCTCAATCTTGCTTTTTGTTTTTAATAT  399

seq1  TTATTTTTTTATATATGTATGAATGCTTTGCCTGTGCGTGTCTATGCGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTATATATGTATGAATGCTTTGCCTGTGCGTGTCTATGCGAC  449

seq1  GTGTGTGTCCTTTATGTCAAAGGCCAGAAGGCCATTGATCGATCCTCTGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCCTTTATGTCAAAGGCCAGAAGGCCATTGATCGATCCTCTGG  499

seq1  GAACTGGAGTTACAGATGGTTGTGAGCCACCGTGAGGGTGCTGGAAACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGTTACAGATGGTTGTGAGCCACCGTGAGGGTGCTGGAAACTG  549

seq1  AACCCAGGTCCTCTGGAAGAACAGTAAAGTACTGTTAAGGGTTGAGCCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTCCTCTGGAAGAACAGTAAAGTACTGTTAAGGGTTGAGCCAT  599

seq1  TGCTCCAGCTATAAGCTCAGTCTTAAAGCCAGGACAGGGCAGGGGATTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCTATAAGCTCAGTCTTAAAGCCAGGACAGGGCAGGGGATTCA  649

seq1  TTTGTTCTTGTTCTAACGCAGGTGGCAACTGTGTCTCTTCCCCACGAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGTTCTAACGCAGGTGGCAACTGTGTCTCTTCCCCACGAGTG  699

seq1  CGGGGCCCCAGCCTCACAGTCTTTCAAGATTGGCTAGTTTTAAATGGATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCCCAGCCTCACAGTCTTTCAAGATTGGCTAGTTTTAAATGGATC  749

seq1  TTGGCAAAGGAAAGGAAGGCTCAGCTGCATCAGGACTGTTCAGTTCTGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAGGAAAGGAAGGCTCAGCTGCATCAGGACTGTTCAGTTCTGGG  799

seq1  AAGGGGTTGGCGGGATGCTTTGCAAAATCAAAAGGTGGGGGAGATTTACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTGGCGGGATGCTTTGCAAAATCAAAAGGTGGGGGAGATTTACA  849

seq1  AAAACATTTTGTAAGTTGGAGGAATTTAAAGGTTTGAATTC  886
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTGTAAGTTGGAGGAATTTAAAGGTTTGAATTC  890