BAC Information

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BAC

Clone NameB6Ng01-238O09
Chromosome2 (Build37)
Map Location 112,231,182 - 112,384,058
singlet/doubletdoublet
Overlap gene2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Upstream geneLOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839
Downstream geneRyr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O09.bB6Ng01-238O09.g
ACCGA049471GA049472
length9931,077
definitionB6Ng01-238O09.b B6Ng01-238O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,383,315 - 112,384,058)(112,231,182 - 112,232,277)
sequence
gaattcctatcacactgtgtatgtcttcagaccccatcatatattctctg
caaatgcataaatccggacaaggcatgccatcctgagatcaaggcgacgg
caagcagacgctgctgagtcccagcattgcttgctctgttgtctgaggat
caggcattcccaccaggtgagctgttcttcgtccaccctgtctccagagc
cttgatttgatttcctcatgttaaaaggaaagacctgctcagaaatgggg
gcttctgtcagcaataaaatacaagtttttgacatctttgtggtaagtta
ggtggttgtaccagctagctggtaataacaaacactgaagaagatatgac
aggcgctaacaaatggtgctaggataattgggtggatctgtaaataaatg
aaagtagattcgtatagcttactttgcacacacatgcacaaaaagaaaac
aaatgacaacaaatgggagagaggtaatcctatactttgcttttcctgct
gctgtgataataaataaataaataaataaataaataaataaataaataaa
taaataaataaataaacactgaccaaactatcttggagggaaaggattta
tttcccttacacttccctggcatgatccatcactgagggaagtcagggca
ggaactcaagcagagaccatggaggaccactgtctactgacttactctcc
atggcttgctcagccttttcttatacaacctaggaccacctgcccatagg
tggcacaagccatagtgggctggatgctaccacaccaaacattaagaaaa
tgaccccacagccctgcccacaggccaatctaatggaagcaattccccag
ctgaggttccctcttcccaggtgactctcatgtatgtccggttgataaaa
aataaccaaacaccctcgtatacaggggctggcaacagtataggcgcagt
caccacagaagtcagtgtgaaatactaaagtagagctcatctc
gaattcagtcctcaggacccatatgccagctgtagctatataacaagttc
caggtcggcctgggttatataatgagactctgtttcaaaaaaaaaaaaaa
ttcccctaagatcccatttctctttgtttcagttttctcctatattaaaa
caaaggtaccgttttgtaggtttttcattcttttggagttaagtcaaggc
aaattatataaataaacatttttacttttattcatgaaaacactaaaaca
gctggttcccaagttacatggatagttaaaggtggaagctggaaaattct
gcctggttcttttgaacctggtctttaaactgcaccggtcttttaagttt
taagagagtctttagtttttactcagtaagctgtggcccatactactaca
cagtgagcagtaaggttcccagagagttgagagagcgtggaaggagccca
gaggtgtctgctgattgagctttgtaaactcccacatgccattgcataca
cagggcactgagggcatgttcagcttggtctacacagtctgatccagccc
acacagttgactactagaaccagttggtctggctttggtaatctccattc
agaacgcatgtgtgttctgggtgttttaaggaacatttcagaaactgtca
ggactcaagaatagactggtttcctaaagggaagacagtgggtctgagcc
caccgttacttctatcaagcaagtgcctgatgtatgagcatgctatagtg
aaaagccataaattctctcctctattttttcctatgtgctggggattgag
ccaaattcttgcagattttctaccactaagctacacaacagtgctatttc
ccaatttccttaaaggcagttattaagatactattctatgacttgtcact
tccatatagtagcacatcattactatagtaaagtatgtacatctctctac
ccccaattttcttatccttggagagactttcctgcttattactgaatatg
tttccttcacagttatatttttgcttattagatgtcatgaaatagcttaa
catttagttcttcacttagctcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112383315_112384058
seq2: B6Ng01-238O09.b_48_795 (reverse)

seq1  TATGGGCAGGTGGTCCTAGGTTGTATAAGAAAAGGCTGAGCAAGCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCAGGTGGTCCTAGGTTGTATAAGAAAAGGCTGAGCAAGCCATGG  50

seq1  AGAGTAAGTCAGTAGACAGTGGTCCTCCATGGTCTCTGCTTGAGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTCAGTAGACAGTGGTCCTCCATGGTCTCTGCTTGAGTTCCTG  100

seq1  CCCTGACTTCCCTCAGTGATGGATCATGCCAGGGAAGTGTAAGGGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTCCCTCAGTGATGGATCATGCCAGGGAAGTGTAAGGGAAATA  150

seq1  AATCCTTTCCCTCCAAGATAGTTTGGTCAGTG----TTTATTTATTTATT  196
      ||||||||||||||||||||||||||||||||    ||||||||||||||
seq2  AATCCTTTCCCTCCAAGATAGTTTGGTCAGTGTTTATTTATTTATTTATT  200

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATCACAGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATCACAGCAG  250

seq1  CAGGAAAAGCAAAGTATAGGATTACCTCTCTCCCATTTGTTGTCATTTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGCAAAGTATAGGATTACCTCTCTCCCATTTGTTGTCATTTGT  300

seq1  TTTCTTTTTGTGCATGTGTGTGCAAAGTAAGCTATACGAATCTACTTTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTGTGCATGTGTGTGCAAAGTAAGCTATACGAATCTACTTTCA  350

seq1  TTTATTTACAGATCCACCCAATTATCCTAGCACCATTTGTTAGCGCCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACAGATCCACCCAATTATCCTAGCACCATTTGTTAGCGCCTGT  400

seq1  CATATCTTCTTCAGTGTTTGTTATTACCAGCTAGCTGGTACAACCACCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCTTCAGTGTTTGTTATTACCAGCTAGCTGGTACAACCACCTA  450

seq1  ACTTACCACAAAGATGTCAAAAACTTGTATTTTATTGCTGACAGAAGCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCACAAAGATGTCAAAAACTTGTATTTTATTGCTGACAGAAGCCC  500

seq1  CCATTTCTGAGCAGGTCTTTCCTTTTAACATGAGGAAATCAAATCAAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGAGCAGGTCTTTCCTTTTAACATGAGGAAATCAAATCAAGGC  550

seq1  TCTGGAGACAGGGTGGACGAAGAACAGCTCACCTGGTGGGAATGCCTGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACAGGGTGGACGAAGAACAGCTCACCTGGTGGGAATGCCTGAT  600

seq1  CCTCAGACAACAGAGCAAGCAATGCTGGGACTCAGCAGCGTCTGCTTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACAACAGAGCAAGCAATGCTGGGACTCAGCAGCGTCTGCTTGCC  650

seq1  GTCGCCTTGATCTCAGGATGGCATGCCTTGTCCGGATTTATGCATTTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCTTGATCTCAGGATGGCATGCCTTGTCCGGATTTATGCATTTGCA  700

seq1  GAGAATATATGATGGGGTCTGAAGACATACACAGTGTGATAGGAATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATATGATGGGGTCTGAAGACATACACAGTGTGATAGGAATTC  748

seq1: chr2_112231182_112232277
seq2: B6Ng01-238O09.g_68_1144

seq1  GAATTCAGTCCTCAGGACCCATATGCCAGCTGTAGCTATATAACAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTCAGGACCCATATGCCAGCTGTAGCTATATAACAAGTTC  50

seq1  CAGGTCGGCCTGGGTTATATAATGAGACTCTGTTTCAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCGGCCTGGGTTATATAATGAGACTCTGTTTCAAAAAAAAAAAAAA  100

seq1  TTCCCCTAAGATCCCATTTCTCTTTGTTTCAGTTTTCTCCTATATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTAAGATCCCATTTCTCTTTGTTTCAGTTTTCTCCTATATTAAAA  150

seq1  CAAAGGTACCGTTTTGTAGGTTTTTCATTCTTTTGGAGTTAAGTCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTACCGTTTTGTAGGTTTTTCATTCTTTTGGAGTTAAGTCAAGGC  200

seq1  AAATTATATAAATAAACATTTTTACTTTTATTCATGAAAACACTAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATAAATAAACATTTTTACTTTTATTCATGAAAACACTAAAACA  250

seq1  GCTGGTTCCCAAGTTACATGGATAGTTAAAGGTGGAAGCTGGAAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCCAAGTTACATGGATAGTTAAAGGTGGAAGCTGGAAAATTCT  300

seq1  GCCTGGTTCTTTTGAACCTGGTCTTTAAACTGCACCGGTCTTTTAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTCTTTTGAACCTGGTCTTTAAACTGCACCGGTCTTTTAAGTTT  350

seq1  TAAGAGAGTCTTTAGTTTTTACTCAGTAAGCTGTGGCCCATACTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTCTTTAGTTTTTACTCAGTAAGCTGTGGCCCATACTACTACA  400

seq1  CAGTGAGCAGTAAGGTTCCCAGAGAGTTGAGAGAGCGTGGAAGGAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCAGTAAGGTTCCCAGAGAGTTGAGAGAGCGTGGAAGGAGCCCA  450

seq1  GAGGTGTCTGCTGATTGAGCTTTGTAAACTCCCACATGCCATTGCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCTGCTGATTGAGCTTTGTAAACTCCCACATGCCATTGCATACA  500

seq1  CAGGGCACTGAGGGCATGTTCAGCTTGGTCTACACAGTCTGATCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACTGAGGGCATGTTCAGCTTGGTCTACACAGTCTGATCCAGCCC  550

seq1  ACACAGTTGACTACTAGAACCAGTTGGTCTGGCTTTGGTAATCTCCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGACTACTAGAACCAGTTGGTCTGGCTTTGGTAATCTCCATTC  600

seq1  AGAACGCATGTGTGTTCTGGGTGTTTTAAGGAACATTTCAGAAACTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCATGTGTGTTCTGGGTGTTTTAAGGAACATTTCAGAAACTGTCA  650

seq1  GGACTCAAGAATAGACTGGTTTCCTAAAGGGAAGACAGTGGGTCTGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGAATAGACTGGTTTCCTAAAGGGAAGACAGTGGGTCTGAGCC  700

seq1  CACCGTTACTTCTATCAAGCAAGTGCCTGATGTATGAGCATGCTATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTACTTCTATCAAGCAAGTGCCTGATGTATGAGCATGCTATAGTG  750

seq1  AAAAGCCATAAATTCTCTCCTCTATTTTTTCCTATGTGCTGGGGATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATAAATTCTCTCCTCTATTTTTTCCTATGTGCTGGGGATTGAG  800

seq1  CCAAATTCTTGCAGATTTTCTACCACTAAGCTACACAACAGTGCTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTTGCAGATTTTCTACCACTAAGCTACACAACAGTGCTATTTC  850

seq1  CCAATTTCCTTAAAGGCAGTTATTAAGATACTATTTCTATGACTTGTCAC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAATTTCCTTAAAGGCAGTTATTAAGATACTA-TTCTATGACTTGTCAC  899

seq1  TTCCATATAGTAGCACAATCATTACTATAGTAAAGTATGTAACATCTCTC  950
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TTCCATATAGTAGCAC-ATCATTACTATAGTAAAGTATGT-ACATCTCTC  947

seq1  TACCCCCAAAATTTTCTTATTCCTTTGGAGAGAACTTTTCCCTGCTTATT  1000
      |||||||  |||||||||||  | |||||||| |||||  ||||||||||
seq2  TACCCCC--AATTTTCTTAT--CCTTGGAGAG-ACTTT--CCTGCTTATT  990

seq1  ACTG-ATATGTTTCCTTCCACAGTTTATATTTTTGCTATTTAGAATGTCA  1049
      |||| |||||||||||| ||||| |||||||||||||  |||| ||||||
seq2  ACTGAATATGTTTCCTT-CACAG-TTATATTTTTGCTTATTAG-ATGTCA  1037

seq1  TGAAAATAGCCTTTTACATTTTAGTTTCCTTCACTTAGCTCAATATA  1096
      || |||||||  || ||| |||||||  ||||||||||||| |||||
seq2  TG-AAATAGC--TTAACA-TTTAGTT--CTTCACTTAGCTC-ATATA  1077