BAC Information

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BAC

Clone NameB6Ng01-239H23
Chromosome2 (Build37)
Map Location 57,459,381 - 57,460,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H23.bB6Ng01-239H23.g
ACCGA049906GA049907
length1,2181,151
definitionB6Ng01-239H23.b B6Ng01-239H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcacctgaggaatactgaatgggtgagaaacacctgaaaaaatgttcagc
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattctacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcaaggatgtggagaaagaggaacactcctcccctattggtgggattg
caagcttgtacaaccactctggaaattagtcttgcggtttctcagataat
tggacatggtactacccggaggatcctgcaatacctctcctgggcatata
tccagaagatgttccaactagtaaaaaagaaacatgctccactatgttca
tagcagccttatttataatagccagaaactggaaagaacccagatgcccc
tcaacagaggaatggatacaaaaaaatgtggtacatttacccaatgggat
actactcagctattaaaaaagaatgaatttatgaaattcctaggcaaatg
gttggacctggagggcactatcctgagtgaggtagcccaatcacaaaaga
actcaaatgatatgtactcactgataagtggatattagcccagaaactta
gaatacccaagatataagttacaatttgccaaacacatgaaactcaagaa
gaacgaaaaccaaagtgtggacactttgccccttcttagaattgggaaca
aaacacccatggaaggagttacagagacaaagtttggagctaagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataatcag
cctccaaacgctgacaccattgcacacactagcaagattgtgctgataga
accctgatatagctgtctctagtgagactacgccggggcctagcaaacac
agaagtggatgctcacagtcagctattggatggatcacagggccccccaa
tggaggagctagagaaaatacccaaggagctaaagggatctgcaacccta
taggtggaacaacattatgaactaaccagtaccccggagcttctgactct
agctgcatattgttatcaaaagatggcctagtgagccaccactgaaagag
aaggctcttgggtccttgcaactttatatgccccagttacaggacatgca
aggctaaaagctgggagtgggtgtgggtttaaggggccttgatttcatgc
actgactcactatgtact
gaattcatggcaggaagaagaaagaggctactgcaggaatcagaacttta
agacacactaatctgcaaacaacaagtgttccagttaatgtcctgggcgc
tgaaccactcgattaataattcagggagctttatgcaagtatatgtttct
catacatggttacggacatggttattgtgaaattacatgatttccccatg
gactctaaaattctatgatttgacaaccaagtaaataaagagaactttta
aaaaatgttgtgaaaatcagaaaattccttgaattctcaaaggatcgtta
ggcatttgcttctcaagctggggtggtcagggtcagcagtacaagagata
cttgatagggagagtctttagaaccaacctcaggctaagaatgcattcga
taaaatctctgggacttgtacatgtctctaagtttcaagcatctggaaaa
agaaaaaacccataaagcatctttaaacttcaacaataatgttgtaaact
taaagtcataaaactgagcatcaaatatccttgtcacctgctatggacca
ttatatatacccataatgagtggaaaaaaatctgtctaatgaaacctaag
gataaggaaaagcattcattgtcaaagtgtcttcttagctcttgttttat
atagagtatggtactgcactactcataacagcatccagctctaacttgag
cttcttcccaatgcagcttgattagtgaaagcttcaaacttggatgaaag
tgatgaagagtagtaaaagttgatggaaaaaaaattggaatttttgaacc
gactttactctaaacccacaactttaatatgctacttgcgtgcactctct
gtgctttggatactattatcgtttggaaacaaaggtacagtcatgctttc
ctctggttagaagcatttgtgaggactccttgctaaaaaggggaagtcta
aactctggtaacagtttctatgacattacttctataattcaagcttcgat
ggatacagctctcacaatggcctacctcatgtactgcttcttcttgaact
tttatccttagaccagccatttcataaatcgtctctccttcctctcgttg
tctttacacaaccctctttctctattacctggcgcatggtatctggtacc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_57459381_57460538
seq2: B6Ng01-239H23.g_65_1215

seq1  GAATTCATGGCAGGAAGAAGAAAGAGGCTACTGCAGGAATCAGAACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGGAAGAAGAAAGAGGCTACTGCAGGAATCAGAACTTTA  50

seq1  AGACACACTAATCTGCAAACAACAAGTGTTCCAGTTAATGTCCTGGGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACTAATCTGCAAACAACAAGTGTTCCAGTTAATGTCCTGGGCGC  100

seq1  TGAACCACTCGATTAATAATTCAGGGAGCTTTATGCAAGTATATGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTCGATTAATAATTCAGGGAGCTTTATGCAAGTATATGTTTCT  150

seq1  CATACATGGTTACGGACATGGTTATTGTGAAATTACATGATTTCCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGGTTACGGACATGGTTATTGTGAAATTACATGATTTCCCCATG  200

seq1  GACTCTAAAATTCTATGATTTGACAACCAAGTAAATAAAGAGAACTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAAAATTCTATGATTTGACAACCAAGTAAATAAAGAGAACTTTTA  250

seq1  AAAAATGTTGTGAAAATCAGAAAATTCCTTGAATTCTCAAAGGATCGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTGTGAAAATCAGAAAATTCCTTGAATTCTCAAAGGATCGTTA  300

seq1  GGCATTTGCTTCTCAAGCTGGGGTGGTCAGGGTCAGCAGTACAAGAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGCTTCTCAAGCTGGGGTGGTCAGGGTCAGCAGTACAAGAGATA  350

seq1  CTTGATAGGGAGAGTCTTTAGAACCAACCTCAGGCTAAGAATGCATTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGGGAGAGTCTTTAGAACCAACCTCAGGCTAAGAATGCATTCGA  400

seq1  TAAAATCTCTGGGACTTGTACATGTCTCTAAGTTTCAAGCATCTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCTGGGACTTGTACATGTCTCTAAGTTTCAAGCATCTGGAAAA  450

seq1  AGAAAAAACCCATAAAGCATCTTTAAACTTCAACAATAATGTTGTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACCCATAAAGCATCTTTAAACTTCAACAATAATGTTGTAAACT  500

seq1  TAAAGTCATAAAACTGAGCATCAAATATCCTTGTCACCTGCTATGGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCATAAAACTGAGCATCAAATATCCTTGTCACCTGCTATGGACCA  550

seq1  TTATATATACCCATAATGAGTGGAAAAAAATCTGTCTAATGAAACCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATACCCATAATGAGTGGAAAAAAATCTGTCTAATGAAACCTAAG  600

seq1  GATAAGGAAAAGCATTCATTGTCAAAGTGTCTTCTTAGCTCTTGTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGAAAAGCATTCATTGTCAAAGTGTCTTCTTAGCTCTTGTTTTAT  650

seq1  ATAGAGTATGGTACTGCACTACTCATAACAGCATCCAGCTCTAACTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATGGTACTGCACTACTCATAACAGCATCCAGCTCTAACTTGAG  700

seq1  CTTCTTCCCAATGCAGCTTGATTAGTGAAAGCTTCAAACTTGGATGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCCAATGCAGCTTGATTAGTGAAAGCTTCAAACTTGGATGAAAG  750

seq1  TGATGAAGAGTAGTAAAAGTTGATGGAAAAAAAATTGGAATTTTTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAGTAGTAAAAGTTGATGGAAAAAAAATTGGAATTTTTGAACC  800

seq1  GACTTTACTCTAAACCCACAACTTTAATATGCTACTTGCGTGCACTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACTCTAAACCCACAACTTTAATATGCTACTTGCGTGCACTCTCT  850

seq1  GTGCTTTGGATACTATTATCGTTTGGAAACAAAGGTACAGTCATGCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGGATACTATTATCGTTTGGAAACAAAGGTACAGTCATGCTTTC  900

seq1  CTCTGGTTAGAAGCATTTGTGAGGACTCCTTGCTAAAAAAGGGGAAGTCT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGGTTAGAAGCATTTGTGAGGACTCCTTGCT-AAAAAGGGGAAGTCT  949

seq1  AAACTCTGGTAAACAAGTTTCTATGACATTTACTTCTAATAATTCAAGCT  1000
      ||||||||||||   ||||||||||||| |||||||| ||||||||||||
seq2  AAACTCTGGTAA--CAGTTTCTATGACA-TTACTTCT-ATAATTCAAGCT  995

seq1  TCGATGGATACAGCTCCTCCACAATGGCCTACCTCATGTACTTGCTTCT-  1049
      ||||||||||||||||   |||||||||||||||||||||| ||||||| 
seq2  TCGATGGATACAGCTC--TCACAATGGCCTACCTCATGTAC-TGCTTCTT  1042

seq1  -CTGAACTTTTATCCTTAGACCCAAGGCATTTCATAAATCGTCT---CCT  1095
        ||||||||||||||||||||  || |||||||||||||||||   | |
seq2  CTTGAACTTTTATCCTTAGACC--AGCCATTTCATAAATCGTCTCTCCTT  1090

seq1  CCTCTCGGTTGTCTTTTTACCACAACCTCTCTTCTCTATTAACT-GCGCA  1144
      |||||| |||||||||  || ||  ||||| |||||||||| || |||||
seq2  CCTCTC-GTTGTCTTTACACAAC--CCTCT-TTCTCTATTACCTGGCGCA  1136

seq1  TGGTATCT-GTACCC  1158
      |||||||| ||||||
seq2  TGGTATCTGGTACCC  1151