BAC Information

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BAC

Clone NameB6Ng01-240L12
Chromosome2 (Build37)
Map Location 40,419,115 - 40,538,503
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240L12.bB6Ng01-240L12.g
ACCGA050814GA050815
length1,0881,164
definitionB6Ng01-240L12.b B6Ng01-240L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,419,115 - 40,420,207)(40,537,323 - 40,538,503)
sequence
gaattccctcaaatttatgtttttttttattgcttctatttttattttca
ggtcttgaacagttttattcatttccttcatctgtttgtttgttttggct
ttctttaagagttttattcatttcttcccattgttgctcaagatagtccc
tgttccagttgttgggggaccctcatgaagaccaagctgctcatctgcta
tgtatgtgcaggggcttaggtccagctctttagtcagagattcagtctat
gagagtccacaagggtccagcttgaccttgaaatatgttttcttgaattt
cttgaaggtatttaagattttctccaattgtttgtttgtgttttcctgga
tttctttctggagtttcaattcctccttaggggcctcaatcaacttcata
aaattggttttaagattattttttgagcttccagtgctcaatatattact
atatcaggttcttgtgttgctgtacttctctagctgttggttcatttatt
agtaaaggtgccattttctgagttcacctttgttgactggattttccccc
cttggtttctgtatcttttctgattttctggtctgaatatcctgtagttt
caatgactggtaatttctcatctccctactggcaaggctgtagaataagg
ggaacactcttctatttctactgggagtgcaaatgtctacagccactttg
gtaaccaatatgacagtatctgcgaaaacagagagtcaatctagctcaag
acccagctatactactcctggacatctacccaaataatgttgctacatcc
tacaacaactatgttcatagcaggtttatttataatagccagaaacagaa
aacaacctagatgaatgaattatgaaacaaggtactgaaagaacctagtg
gggaaacccccactcaatttctgattcggtgtgcacccaagaatcacagc
agacaaccatcttgatgtaaaagcatgaggtagtttaataatggagctct
gggctgacacatatctccacaggagaaagaggtgtcacacgaggcttgga
agctagggatttttttttagaatgggtggggcttgggg

gaattctttgtttacatctgtaccccatctttaagaattcatttggaata
acaaaaaacaaaaacaaaaaaacaaaaaaacaaaaaatgggatagaaaaa
tactattctctacaaaaacttacctctggggaaataaccatacctgacct
aaagctgtattacagagtaatcatgataatattgtaaggtattagtacag
agacaggcacatatatcaaaggaatagaattgaagacccagaaatgaacc
cagatacctatgctcacttgatctttgacaaaagagctaaaaccatccag
tcaacatgtagaggaatgcacagtgatccattcttatctctttgtataaa
gcacaagtccaagtgaatcaagaacatccacataaaaccaggtacactga
aactaatagaagagaaattggggaagattcttgaaaacatggcctcaggg
aaaaatttcttgactaatattttgatagggccctaacttacctgtgtatt
tagaccctttaattattctgaagaaatcaatcaacatgtatcttctaggt
tgttcaagaatattaacaaaaacttcatttgttagaatggtaatttcctt
agtctttctcaaatgggacatgtcactatggagtcattggttttgacctc
tttgttggcctaggaacaaatgaacaattttttatgcaattttatataac
acatgatttgatttgttttacttttctttctgcctttttggggttaagca
atacatgctatgatgttctctattcccaggcaattctcttttctgtctct
ttaactcagtttaaataatcacctttgggctggtgagatggctcagtggg
taagagcacccaactgctcttccgaaggtcaggagttcaaatcccagcaa
ccacatgggtggctcacaacccatccgcaaggagatctgactccctcttc
tggagtgtctgagacagctacagtgtacttttaaataataataaataata
ataataataataataataataatcttaaaatatataatatcacctttttt
taacatttagtgtttgtaagatagaggtaaaatggtaccaggagtttttc
tttcactccatttgtcagagcctattagcatgaatcatttgttgatatat
ctttcacaaatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40419115_40420207
seq2: B6Ng01-240L12.b_44_1131

seq1  GAATTCCCTCAAATTTATGTTTTTTTTTATTGCTTCTATTTTTATTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAAATTTATGTTTTTTTTTATTGCTTCTATTTTTATTTTCA  50

seq1  GGTCTTGAACAGTTTTATTCATTTCCTTCATCTGTTTGTTTGTTTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAACAGTTTTATTCATTTCCTTCATCTGTTTGTTTGTTTTGGCT  100

seq1  TTCTTTAAGAGTTTTATTCATTTCTTCCCATTGTTGCTCAAGATAGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGAGTTTTATTCATTTCTTCCCATTGTTGCTCAAGATAGTCCC  150

seq1  TGTTCCAGTTGTTGGGGGACCCTCATGAAGACCAAGCTGCTCATCTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGTTGTTGGGGGACCCTCATGAAGACCAAGCTGCTCATCTGCTA  200

seq1  TGTATGTGCAGGGGCTTAGGTCCAGCTCTTTAGTCAGAGATTCAGTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCAGGGGCTTAGGTCCAGCTCTTTAGTCAGAGATTCAGTCTAT  250

seq1  GAGAGTCCACAAGGGTCCAGCTTGACCTTGAAATATGTTTTCTTGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCACAAGGGTCCAGCTTGACCTTGAAATATGTTTTCTTGAATTT  300

seq1  CTTGAAGGTATTTAAGATTTTCTCCAATTGTTTGTTTGTGTTTTCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTATTTAAGATTTTCTCCAATTGTTTGTTTGTGTTTTCCTGGA  350

seq1  TTTCTTTCTGGAGTTTCAATTCCTCCTTAGGGGCCTCAATCAACTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGGAGTTTCAATTCCTCCTTAGGGGCCTCAATCAACTTCATA  400

seq1  AAATTGGTTTTAAGATTATTTTTTGAGCTTCCAGTGCTCAATATATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTTTTAAGATTATTTTTTGAGCTTCCAGTGCTCAATATATTACT  450

seq1  ATATCAGGTTCTTGTGTTGCTGTACTTCTCTAGCTGTTGGTTCATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGTTCTTGTGTTGCTGTACTTCTCTAGCTGTTGGTTCATTTATT  500

seq1  AGTAAAGGTGCCATTTTCTGAGTTCACCTTTGTTGACTGGATTTTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGTGCCATTTTCTGAGTTCACCTTTGTTGACTGGATTTTCCCCC  550

seq1  CTTGGTTTCTGTATCTTTTCTGATTTTCTGGTCTGAATATCCTGTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCTGTATCTTTTCTGATTTTCTGGTCTGAATATCCTGTAGTTT  600

seq1  CAATGACTGGTAATTTCTCATCTCCCTACTGGCAAGGCTGTAGAATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGGTAATTTCTCATCTCCCTACTGGCAAGGCTGTAGAATAAGG  650

seq1  GGAACACTCTTCTATTTCTACTGGGAGTGCAAATGTCTACAGCCACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTCTTCTATTTCTACTGGGAGTGCAAATGTCTACAGCCACTTTG  700

seq1  GTAACCAATATGACAGTATCTGCGAAAACAGAGAGTCAATCTAGCTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAATATGACAGTATCTGCGAAAACAGAGAGTCAATCTAGCTCAAG  750

seq1  ACCCAGCTATACTACTCCTGGACATCTACCCAAATAATGTTGCTACATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTATACTACTCCTGGACATCTACCCAAATAATGTTGCTACATCC  800

seq1  TACAACAACTATGTTCATAGCAGGTTTATTTATAATAGCCAGAAACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAACTATGTTCATAGCAGGTTTATTTATAATAGCCAGAAACAGAA  850

seq1  AACAACCTAGATGAATGAATTATGAAAACAAGGTACTGAAAGAACCTAGT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACAACCTAGATGAATGAATTATG-AAACAAGGTACTGAAAGAACCTAGT  899

seq1  GGGGAAACCCCCACTCAATTTCTGATTCGGTGTGCACCCAAGAATCACAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGGAAACCCCCACTCAATTTCTGATTCGGTGTGCACCCAAGAATCAC-A  948

seq1  GCAGACAACCATCTTGATGTAAAAGCATGAGGTAGTTTAATAATGGAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAACCATCTTGATGTAAAAGCATGAGGTAGTTTAATAATGGAGCT  998

seq1  CTGGGCTGACACATATCTCCCACAGGAGACAGAGGTGTCAACCACGAGGC  1050
      |||||||||||||||||| |||||||||| ||||||||||  ||||||||
seq2  CTGGGCTGACACATATCT-CCACAGGAGAAAGAGGTGTCA--CACGAGGC  1045

seq1  TTGGAAGCTAGGGATTTTTATAGAAAAGGGGTGGGGCTGGGGG  1093
      ||||||||||||||||||| |  | || |||||||||| ||||
seq2  TTGGAAGCTAGGGATTTTTTTTTAGAATGGGTGGGGCTTGGGG  1088


seq1: chr2_40537323_40538503
seq2: B6Ng01-240L12.g_65_1228 (reverse)

seq1  CAGATTT-TGAAAGATATATCCACAAATGATTCATGCTAAATAGCTCTTG  49
      ||||||| ||||||||||||| ||||||||||||||||||   |||| ||
seq2  CAGATTTGTGAAAGATATATCAACAAATGATTCATGCTAATAGGCTC-TG  49

seq1  ACAAATGGAGTGAAAGAAAAAACTCTTGTTACAATTTTAACTCTATCTTA  99
      |||||||||||||||| |||||||| || ||| |||||| ||||||||||
seq2  ACAAATGGAGTGAAAG-AAAAACTCCTGGTACCATTTTACCTCTATCTTA  98

seq1  CAAACACTAAATGTTAAAAAAAAGGTGATTATTATTATTATTTTTTAAAG  149
      ||||||||||||||| ||||||||||||    ||||| ||| |||| |||
seq2  CAAACACTAAATGTT-AAAAAAAGGTGA----TATTA-TATATTTT-AAG  141

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT  199
      | |||||   |||||   |||||  | |  |||||||||   ||||||| 
seq2  A-TTATT--ATTATT--ATTATTATTATTATTATTTATT--ATTATTTA-  183

seq1  TTAAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGAT  249
        |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  --AAAGTACACTGTAGCTGT-CTCAGACACTCCAGAAGAGGGAGTCAGAT  230

seq1  CTCCTTGCGGAT-GGTTGTGAGCCA-CCATGTGGTTGCTGGGATTTGAAC  297
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CTCCTTGCGGATGGGTTGTGAGCCACCCATGTGGTTGCTGGGATTTGAAC  280

seq1  TCCTGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTC  330

seq1  ACCAGCCCAAAGGTGATTATTTAAACTGAGTTAAAGAGACAGAAAAGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCAAAGGTGATTATTTAAACTGAGTTAAAGAGACAGAAAAGAGA  380

seq1  ATTGCCTGGGAATAGAGAACATCATAGCATGTATTGCTTAACCCCAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGGGAATAGAGAACATCATAGCATGTATTGCTTAACCCCAAAAA  430

seq1  GGCAGAAAGAAAAGTAAAACAAATCAAATCATGTGTTATATAAAATTGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGAAAAGTAAAACAAATCAAATCATGTGTTATATAAAATTGCA  480

seq1  TAAAAAATTGTTCATTTGTTCCTAGGCCAACAAAGAGGTCAAAACCAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTGTTCATTTGTTCCTAGGCCAACAAAGAGGTCAAAACCAATG  530

seq1  ACTCCATAGTGACATGTCCCATTTGAGAAAGACTAAGGAAATTACCATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAGTGACATGTCCCATTTGAGAAAGACTAAGGAAATTACCATTC  580

seq1  TAACAAATGAAGTTTTTGTTAATATTCTTGAACAACCTAGAAGATACATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGAAGTTTTTGTTAATATTCTTGAACAACCTAGAAGATACATG  630

seq1  TTGATTGATTTCTTCAGAATAATTAAAGGGTCTAAATACACAGGTAAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATTTCTTCAGAATAATTAAAGGGTCTAAATACACAGGTAAGTT  680

seq1  AGGGCCCTATCAAAATATTAGTCAAGAAATTTTTCCCTGAGGCCATGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTATCAAAATATTAGTCAAGAAATTTTTCCCTGAGGCCATGTTT  730

seq1  TCAAGAATCTTCCCCAATTTCTCTTCTATTAGTTTCAGTGTACCTGGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATCTTCCCCAATTTCTCTTCTATTAGTTTCAGTGTACCTGGTTT  780

seq1  TATGTGGATGTTCTTGATTCACTTGGACTTGTGCTTTATACAAAGAGATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGATGTTCTTGATTCACTTGGACTTGTGCTTTATACAAAGAGATA  830

seq1  AGAATGGATCACTGTGCATTCCTCTACATGTTGACTGGATGGTTTTAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATCACTGTGCATTCCTCTACATGTTGACTGGATGGTTTTAGCT  880

seq1  CTTTTGTCAAAGATCAAGTGAGCATAGGTATCTGGGTTCATTTCTGGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCAAAGATCAAGTGAGCATAGGTATCTGGGTTCATTTCTGGGTC  930

seq1  TTCAATTCTATTCCTTTGATATATGTGCCTGTCTCTGTACTAATACCTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTATTCCTTTGATATATGTGCCTGTCTCTGTACTAATACCTTA  980

seq1  CAATATTATCATGATTACTCTGTAATACAGCTTTAGGTCAGGTATGGTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATCATGATTACTCTGTAATACAGCTTTAGGTCAGGTATGGTTA  1030

seq1  TTTCCCCAGAGGTAAGTTTTTGTAGAGAATAGTATTTTTCTATCCCATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGAGGTAAGTTTTTGTAGAGAATAGTATTTTTCTATCCCATTT  1080

seq1  TTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTTGTTATTCCAAATGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTTGTTATTCCAAATGAATTC  1130

seq1  TTAAAGATGGGGTACAGATGTAAACAAAGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  TTAAAGATGGGGTACAGATGTAAACAAAGAATTC  1164


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