BAC Information

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BAC

Clone NameB6Ng01-240O18
Chromosome2 (Build37)
Map Location 122,845,371 - 122,970,783
singlet/doubletdoublet
Overlap genenone
Upstream geneEif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240O18.bB6Ng01-240O18.g
ACCGA050966GA050967
length1,126700
definitionB6Ng01-240O18.b B6Ng01-240O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,969,650 - 122,970,783)(122,845,371 - 122,846,070)
sequence
gaattcaagacccatacataaacataatagaagcaatatacagcaaacca
ggagccaacatcaaactaaatggagagagttggatcagtcctactaaaat
cagggactaggcaaggctgcccactttctccctacctattctatatagta
cttgaagtcctagccagggcaattagagagcaaaaggagatcaaggagat
acaaattggaaaggaagaaatcaaaatatcactatttgcagatgatatag
tagtatatataagtgacccttaaaattccaccagagcacttctaaacctt
ataaacagcttcagtgcagtagctggatataaaattatttcaaacaagta
aaacatggaagaaaacaactttgaccatcaaaatgttgtggaaaaaaatt
ataacagagccaaagttctactcagatggggacagaatgggacagatatt
tcagacacagaagaactacatatccttccactctggaatgctgagataaa
ttcaagtagtttccacagcaaataaaaataaaagtaaaataaaataaaat
aaaaacagtgaaagatagaatgtaaaacagattgtgagaccaacacttag
gaaatattggcaatgataaaataactaagatcaaataagtacagaaaata
cagaagagatgatttcattatctttggtttcctctcaagtagaaaatagc
aatacaagcaatcatatattgcacagatgttgttataaagcataatttta
aatgtctttaattttgtattaacatggaggaggaaatagaatttcaccga
gaaagcagaagagaaataagtaattagtaaagattagtatatccacgtat
ctattatcaaatgaactgaagtaaataaacaaatgaattggttatgttta
aaataaatatgcccacaatattctaaataaaatgtctaatccttacaagt
catttcatttcaacctaaatcattcacccagagaaaaccacgttaaagat
actatcatttaagtgattttttaaaaaatcttcaaatatgtatataatga
tactatgtgtatcaatcattggatggtcactgatggattagtgctaggcc
acacacagagtcttctgcatgtctgt
gaattctatggaattcttgcctttggtgtgattggtcaaacctaggtcac
ctgaccatgcccaaaccagtcattatttttggataagtgttactgtacaa
actgtcggacatttgtctggatttcagaaaacagagagggtacctctgaa
aaactgggactctcttaggaagcatctaaggagagatgcatgctggataa
gaactagatgatctactaaagaggagcattcttctttactcttaggaaac
ctggaactaaaatcattaattcagctttacatacgtgctttccttcccat
tccagcccttctcttaccctcttgtggaaactgttactgctctgagggct
caataatggcccatgtatcctgtaagtgacaggttatagaagaagcactt
ttaacatgtggtgcccagtgaccctcaaaaaaagtagtcttaatgtttgc
ttgtattagatccacatgagacttaattctttgaataatatcaaattgga
aacaaattaagaaatagttttattcttttgtcataaggtttgtgtttggg
gaaattaattgaaatagaatactctcaaaaaataatttgtgtttatttat
aatgcctgctgtttacatggaccaaaattatacattttcatttgccgttc
ctctgtacttgtgtatgtgtgtgtaaatgtggtgtaggtgtgtgtatgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122969650_122970783
seq2: B6Ng01-240O18.b_46_1171 (reverse)

seq1  ACAGACATGCAGAGGACTCTGTGTGTG--CTAGCACTAAATCCCATCAAG  48
      ||||||||||||| |||||||||||||  ||||||||||   ||||||  
seq2  ACAGACATGCAGAAGACTCTGTGTGTGGCCTAGCACTAA--TCCATCA--  46

seq1  TTGACAAT-CAATGGATGATAACCACAATAGTATCAATAATATACATATT  97
       |||| || |||||  |||||  ||| |||||||| || |||||||||||
seq2  GTGACCATCCAATGATTGATA--CAC-ATAGTATC-ATTATATACATATT  92

seq1  TGAAGATTTTTTTAAAAAATCAACTTTAAATGATAGTATCTTTAACGTGG  147
      |||||| |||||||||||||||   |||||||||||||||||||||||||
seq2  TGAAGA-TTTTTTAAAAAATCA--CTTAAATGATAGTATCTTTAACGTGG  139

seq1  TTTTCTCTGGGTGAATGATTTAGGTTGAAATGAAATGACTTGTAAGGATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGGGTGAATGATTTAGGTTGAAATGAAATGACTTGTAAGGATT  189

seq1  AGACATTTTATTTAGAATATTGTGGGCATATTTATTTTAAACATAACCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTATTTAGAATATTGTGGGCATATTTATTTTAAACATAACCAA  239

seq1  TTCATTTGTTTATTTACTTCAGTTCATTTGATAATAGATACGTGGATATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTTATTTACTTCAGTTCATTTGATAATAGATACGTGGATATA  289

seq1  CTAATCTTTACTAATTACTTATTTCTCTTCTGCTTTCTCGGTGAAATTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTTACTAATTACTTATTTCTCTTCTGCTTTCTCGGTGAAATTCT  339

seq1  ATTTCCTCCTCCATGTTAATACAAAATTAAAGACATTTAAAATTATGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCTCCATGTTAATACAAAATTAAAGACATTTAAAATTATGCTT  389

seq1  TATAACAACATCTGTGCAATATATGATTGCTTGTATTGCTATTTTCTACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAACATCTGTGCAATATATGATTGCTTGTATTGCTATTTTCTACT  439

seq1  TGAGAGGAAACCAAAGATAATGAAATCATCTCTTCTGTATTTTCTGTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAAACCAAAGATAATGAAATCATCTCTTCTGTATTTTCTGTACT  489

seq1  TATTTGATCTTAGTTATTTTATCATTGCCAATATTTCCTAAGTGTTGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCTTAGTTATTTTATCATTGCCAATATTTCCTAAGTGTTGGTC  539

seq1  TCACAATCTGTTTTACATTCTATCTTTCACTGTTTTTATTTTATTTTATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCTGTTTTACATTCTATCTTTCACTGTTTTTATTTTATTTTATT  589

seq1  TTACTTTTATTTTTATTTGCTGTGGAAACTACTTGAATTTATCTCAGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTATTTTTATTTGCTGTGGAAACTACTTGAATTTATCTCAGCAT  639

seq1  TCCAGAGTGGAAGGATATGTAGTTCTTCTGTGTCTGAAATATCTGTCCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTGGAAGGATATGTAGTTCTTCTGTGTCTGAAATATCTGTCCCA  689

seq1  TTCTGTCCCCATCTGAGTAGAACTTTGGCTCTGTTATAATTTTTTTCCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCCCATCTGAGTAGAACTTTGGCTCTGTTATAATTTTTTTCCAC  739

seq1  AACATTTTGATGGTCAAAGTTGTTTTCTTCCATGTTTTACTTGTTTGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGATGGTCAAAGTTGTTTTCTTCCATGTTTTACTTGTTTGAAA  789

seq1  TAATTTTATATCCAGCTACTGCACTGAAGCTGTTTATAAGGTTTAGAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATATCCAGCTACTGCACTGAAGCTGTTTATAAGGTTTAGAAGT  839

seq1  GCTCTGGTGGAATTTTAAGGGTCACTTATATATACTACTATATCATCTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTGGAATTTTAAGGGTCACTTATATATACTACTATATCATCTGC  889

seq1  AAATAGTGATATTTTGATTTCTTCCTTTCCAATTTGTATCTCCTTGATCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGATATTTTGATTTCTTCCTTTCCAATTTGTATCTCCTTGATCT  939

seq1  CCTTTTGCTCTCTAATTGCCCTGGCTAGGACTTCAAGTACTATATAGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTCTCTAATTGCCCTGGCTAGGACTTCAAGTACTATATAGAAT  989

seq1  AGGTAGGGAGAAAGTGGGCAGCCTTGCCTAGTCCCTGATTTTAGTAGGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGAGAAAGTGGGCAGCCTTGCCTAGTCCCTGATTTTAGTAGGAC  1039

seq1  TGATCCAACTCTCTCCATTTAGTTTGATGTTGGCTCCTGGTTTGCTGTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAACTCTCTCCATTTAGTTTGATGTTGGCTCCTGGTTTGCTGTAT  1089

seq1  ATTGCTTCTATTATGTTTATGTATGGGTCTTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTATTATGTTTATGTATGGGTCTTGAATTC  1126

seq1: chr2_122845371_122846070
seq2: B6Ng01-240O18.g_67_766

seq1  GAATTCTATGGAATTCTTGCCTTTGGTGTGATTGGTCAAACCTAGGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGAATTCTTGCCTTTGGTGTGATTGGTCAAACCTAGGTCAC  50

seq1  CTGACCATGCCCAAACCAGTCATTATTTTTGGATAAGTGTTACTGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGCCCAAACCAGTCATTATTTTTGGATAAGTGTTACTGTACAA  100

seq1  ACTGTCGGACATTTGTCTGGATTTCAGAAAACAGAGAGGGTACCTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGGACATTTGTCTGGATTTCAGAAAACAGAGAGGGTACCTCTGAA  150

seq1  AAACTGGGACTCTCTTAGGAAGCATCTAAGGAGAGATGCATGCTGGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGACTCTCTTAGGAAGCATCTAAGGAGAGATGCATGCTGGATAA  200

seq1  GAACTAGATGATCTACTAAAGAGGAGCATTCTTCTTTACTCTTAGGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGATGATCTACTAAAGAGGAGCATTCTTCTTTACTCTTAGGAAAC  250

seq1  CTGGAACTAAAATCATTAATTCAGCTTTACATACGTGCTTTCCTTCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTAAAATCATTAATTCAGCTTTACATACGTGCTTTCCTTCCCAT  300

seq1  TCCAGCCCTTCTCTTACCCTCTTGTGGAAACTGTTACTGCTCTGAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTTCTCTTACCCTCTTGTGGAAACTGTTACTGCTCTGAGGGCT  350

seq1  CAATAATGGCCCATGTATCCTGTAAGTGACAGGTTATAGAAGAAGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGGCCCATGTATCCTGTAAGTGACAGGTTATAGAAGAAGCACTT  400

seq1  TTAACATGTGGTGCCCAGTGACCCTCAAAAAAAGTAGTCTTAATGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGTGGTGCCCAGTGACCCTCAAAAAAAGTAGTCTTAATGTTTGC  450

seq1  TTGTATTAGATCCACATGAGACTTAATTCTTTGAATAATATCAAATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAGATCCACATGAGACTTAATTCTTTGAATAATATCAAATTGGA  500

seq1  AACAAATTAAGAAATAGTTTTATTCTTTTGTCATAAGGTTTGTGTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTAAGAAATAGTTTTATTCTTTTGTCATAAGGTTTGTGTTTGGG  550

seq1  GAAATTAATTGAAATAGAATACTCTCAAAAAATAATTTGTGTTTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTGAAATAGAATACTCTCAAAAAATAATTTGTGTTTATTTAT  600

seq1  AATGCCTGCTGTTTACATGGACCAAAATTATACATTTTCATTTGCCGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGCTGTTTACATGGACCAAAATTATACATTTTCATTTGCCGTTC  650

seq1  CTCTGTACTTGTGTATGTGTGTGTAAATGTGGTGTAGGTGTGTGTATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACTTGTGTATGTGTGTGTAAATGTGGTGTAGGTGTGTGTATGTG  700