BAC Information

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BAC

Clone NameB6Ng01-241C12
Chromosome2 (Build37)
Map Location 85,620,361 - 85,760,007
singlet/doubletdoublet
Overlap geneOlfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1
Upstream geneUbe2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014
Downstream geneOlfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241C12.bB6Ng01-241C12.g
ACCGA051143GA051144
length1,1301,141
definitionB6Ng01-241C12.b B6Ng01-241C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,620,361 - 85,621,474)(85,758,861 - 85,760,007)
sequence
gaattcaaaactctatatcccaaagattcatgacaaaaatttttattaga
taaaataattatttacaaaaaatattttaagaattcttctttcatttttg
agtataatatatgaattaatttaaaagttatagaacattgcaatttgata
aataaatttcctaatttaacatacttttatctatgaaattgaagtttcac
caaagtaaaatccttctgttggtcaccacatgtaattgttttttgaatac
aaacaaactggctggcttaaataagaaaagtttatcttcttatagtcttg
gatgttagatgttacatttggatttatgtcaaaatgacataagcttagtc
attaaaatagaggagattgctataagaaaatgccctcacccaactggcct
gtcactccaatgtgggcagatggtcctggcgtggataataaagtatgttg
agaaagacaaaggggacaagtcagtaaacagcactcctcatggtctctgc
tacagttcctgtttcaaggttttgccctgagttcctgtcctggttaggca
tttaacttcaagttgtcaacaagttgctgcttatgtaatccttattcaat
aatatgatagcataaactagtgggtttcagtctgacacctctatacatga
atatgttgtgccttaattatgtctattttctctagctctattcctttttt
ctttttcttttttttttttttttttttttttttttttgccttttcgatac
agggttttcttccgtgtagtcctggctggtcctggaactctcctttgtac
acccaaggctagacctttgaactcagaaatccaccctggcttcttgcttc
ttgcctctccaagttgatggggattaaaggcgtgttggccacccacgccc
gcgctctagatctattcttgtgctttttctctgctccacttccctacccc
gtcttttctttttaatgggacaaaaacaagattcctgaagaacaaggcag
aagccctcatatgagactggacaaggcaccaagttaaaaggaaaggcatt
ccaaagattctaatgtacaccaagttccacaggtaagatccataaaaacc
cagataatagctaaccatatatgcgaagac
gaattcataaggataggttttatgtcatattgttggctgtgagctataaa
ttgtttcaaattaaacaagtccagtcttaataaattgaccataattggtg
agtatcaccttaactgtgtgtggaatataattttctaagtgaaaacagtg
tagtaaggtgaaatatgagtcacttgtatatgtaaaataacaatatgctg
tgctggaaatatgacacagaagttacgggctctgatgcccttactgagga
catgagcaaatttcttatcaccctcataatacccagaaaccatctgtgaa
cattatactattgaaatagacaaaggatgggtacttatcacaagagaagt
ctaaagtccacacacaaatgagacaattaaaatatgggttttacacaaaa
gtagctgtataataatatgtctaaagaattaaattactatttatttgcaa
atactagacaatggtaataaaaacataaaggagcagagggtcactgatgg
gagtgcatacccaatagcagatgaacactaaagcctcctagtggaaatgt
ggcatttccaccaagatatatatatgcataaaggttcaatcagatgatta
aaatcatttgaaagttctatcttgcagtaatgatatgagatatatctctg
aaattttacaagttagcacatatttaaaaaatcttaagaaataactgacc
tactgtggtaagaaaatttcagacacataaataaaggaacttactaccaa
agcatttgacaagtctacctttgccaaaacagctcccgtgcaccattata
gagtaatagcaatatgtctgtgcagctttagaattcattttttattcatt
catcaaagtagcataccctgctgtgatatatgtcatttctgagagacaat
taaaataaaaattgacagaaagtaatttggtaattttaaaattgttcatt
tggtttggagagcaaggtgctgtacacctatcaaccttactttcagatac
ttccttcttaacaactttccttaatgcatttttcacatcttttgttctga
agctatagatcagggttcaacatcgggccttacaagattaaagaacggcc
acactttcctggccttacagactctcagatggaagcctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85620361_85621474
seq2: B6Ng01-241C12.b_46_1175

seq1  GAATTCAAAACTCTATATCCCAAAGATTCATGACAAAAATTTTTATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTCTATATCCCAAAGATTCATGACAAAAATTTTTATTAGA  50

seq1  TAAAATAATTATTTACAAAAAATATTTTAAGAATTCTTCTTTCATTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTATTTACAAAAAATATTTTAAGAATTCTTCTTTCATTTTTG  100

seq1  AGTATAATATATGAATTAATTTAAAAGTTATAGAACATTGCAATTTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATATATGAATTAATTTAAAAGTTATAGAACATTGCAATTTGATA  150

seq1  AATAAATTTCCTAATTTAACATACTTTTATCTATGAAATTGAAGTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTCCTAATTTAACATACTTTTATCTATGAAATTGAAGTTTCAC  200

seq1  CAAAGTAAAATCCTTCTGTTGGTCACCACATGTAATTGTTTTTTGAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAAATCCTTCTGTTGGTCACCACATGTAATTGTTTTTTGAATAC  250

seq1  AAACAAACTGGCTGGCTTAAATAAGAAAAGTTTATCTTCTTATAGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACTGGCTGGCTTAAATAAGAAAAGTTTATCTTCTTATAGTCTTG  300

seq1  GATGTTAGATGTTACATTTGGATTTATGTCAAAATGACATAAGCTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGATGTTACATTTGGATTTATGTCAAAATGACATAAGCTTAGTC  350

seq1  ATTAAAATAGAGGAGATTGCTATAAGAAAATGCCCTCACCCAACTGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGAGGAGATTGCTATAAGAAAATGCCCTCACCCAACTGGCCT  400

seq1  GTCACTCCAATGTGGGCAGATGGTCCTGGCGTGGATAATAAAGTATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCAATGTGGGCAGATGGTCCTGGCGTGGATAATAAAGTATGTTG  450

seq1  AGAAAGACAAAGGGGACAAGTCAGTAAACAGCACTCCTCATGGTCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAAAGGGGACAAGTCAGTAAACAGCACTCCTCATGGTCTCTGC  500

seq1  TACAGTTCCTGTTTCAAGGTTTTGCCCTGAGTTCCTGTCCTGGTTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCCTGTTTCAAGGTTTTGCCCTGAGTTCCTGTCCTGGTTAGGCA  550

seq1  TTTAACTTCAAGTTGTCAACAAGTTGCTGCTTATGTAATCCTTATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCAAGTTGTCAACAAGTTGCTGCTTATGTAATCCTTATTCAAT  600

seq1  AATATGATAGCATAAACTAGTGGGTTTCAGTCTGACACCTCTATACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATAGCATAAACTAGTGGGTTTCAGTCTGACACCTCTATACATGA  650

seq1  ATATGTTGTGCCTTAATTATGTCTATTTTCTCTAGCTCTATTCCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGTGCCTTAATTATGTCTATTTTCTCTAGCTCTATTCCTTTTTT  700

seq1  CTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTCGATAC  750
      |||||||||||| ||||||||||||||||||||||||  |||||||||||
seq2  CTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTTTTCGATAC  750

seq1  AGGGTTT--CTCCGTGTAGTCCTGGCT-GTCCTGGAACTC-CCTTTGTAC  796
      |||||||   ||||||||||||||||| |||||||||||| |||||||||
seq2  AGGGTTTTCTTCCGTGTAGTCCTGGCTGGTCCTGGAACTCTCCTTTGTAC  800

seq1  ACC--AGGCTAG--CCTTGAACTCAGAAATCCA-CCTGCCT--CTGCCTC  839
      |||  |||||||  | ||||||||||||||||| |||| ||   ||| ||
seq2  ACCCAAGGCTAGACCTTTGAACTCAGAAATCCACCCTGGCTTCTTGCTTC  850

seq1  -TGCCTC-CCAAG-TGAT-GGGATTAAAGGCGTGT--GCCA-CCACGCCC  882
       |||||| ||||| |||| ||||||||||||||||  |||| ||||||||
seq2  TTGCCTCTCCAAGTTGATGGGGATTAAAGGCGTGTTGGCCACCCACGCCC  900

seq1  G-GCTCTAGATCTATTCTTGT-CCTTTTCTCTGCTCCAC-TCCCTACCCC  929
      | ||||||||||||||||||| | ||||||||||||||| ||||||||||
seq2  GCGCTCTAGATCTATTCTTGTGCTTTTTCTCTGCTCCACTTCCCTACCCC  950

seq1  GTCTTT--CTTTTAATGGGAC-AAAACAAGATTCCTGAAG-ACAAGGCAG  975
      ||||||   |||||||||||| |||||||||||||||||| |||||||||
seq2  GTCTTTTCTTTTTAATGGGACAAAAACAAGATTCCTGAAGAACAAGGCAG  1000

seq1  AAGCCCTCATATGGAGACTGGACAAGGCAACCCAG-TAAAAGGAAAAGCA  1024
      |||||||||||| ||||||||||||||| ||| || |||||||||| |||
seq2  AAGCCCTCATAT-GAGACTGGACAAGGC-ACCAAGTTAAAAGGAAAGGCA  1048

seq1  TTTCAAAGAATTTCCAAATGTACACCAGTTTCCACAGTTAGGATTCCCAT  1074
      || ||||||   | | |||||||||||  |||||||| || |||  ||||
seq2  TTCCAAAGA---TTCTAATGTACACCAAGTTCCACAGGTAAGAT--CCAT  1093

seq1  AAAACACCAAGATAATAGCCATAACATATATGCAGAAGAC  1114
      |||| ||| |||||||||| | | ||||||||| ||||||
seq2  AAAA-ACCCAGATAATAGCTA-ACCATATATGC-GAAGAC  1130

seq1: chr2_85758861_85760007
seq2: B6Ng01-241C12.g_66_1206 (reverse)

seq1  CTCAGGCCTCCATCTGAGAAGTCTGTAGAGCAGGGGAAAATTGTGGCGGT  50
      ||||||| |||||||||| ||||||||  ||  ||  ||| |||||| ||
seq2  CTCAGGCTTCCATCTGAG-AGTCTGTAAGGCCAGG--AAAGTGTGGCCGT  47

seq1  CTTTTATATCTTTGTAA-GCCCGATGTTGAACCCCTTGATCTATAGCCTC  99
        |||| ||| |||||| ||||||||||||||||  ||||||||||| ||
seq2  TCTTTA-ATC-TTGTAAGGCCCGATGTTGAACCC--TGATCTATAGCTTC  93

seq1  AGAAACAAAGATGTGAAAAATGCAATAAGGAAAGTTGTTAAGAAGGAAGT  149
      ||||  |||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAACAAAAGATGTGAAAAATGCATTAAGGAAAGTTGTTAAGAAGGAAGT  143

seq1  ATTCTTGAAGTAA-GTTGATAGGTGTACAGCACCTTTGCTCTCCAAACC-  197
      | |||  |||||| |||||||||||||||||||| |||||||||||||| 
seq2  A-TCTGAAAGTAAGGTTGATAGGTGTACAGCACC-TTGCTCTCCAAACCA  191

seq1  AATGAAC-ATTTTAAAATTACCAAATTACTTTCTGTCAATTTTTATTTTA  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAATTTTAAAATTACCAAATTACTTTCTGTCAATTTTTATTTTA  241

seq1  ATTTGTCTCTCAGAAATGACATATATCACAGCAGGGTATGCTACCTTGAT  296
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  A-TTGTCTCTCAGAAATGACATATATCACAGCAGGGTATGCTACTTTGAT  290

seq1  GAATGAATAAAAAATGAATTCTAAAGCTGCACAGACATATTGCTATTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAAAAAATGAATTCTAAAGCTGCACAGACATATTGCTATTACT  340

seq1  CTATAATGGTGCACGGGAGCTGTTTTGGCAAAGGTAGACTTGTCAAATGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGGTGCACGGGAGCTGTTTTGGCAAAGGTAGACTTGTCAAATGC  390

seq1  TTTGGTAGTAAGTTCCTTTATTTATGTGTCTGAAATTTTCTTACCACAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGTAAGTTCCTTTATTTATGTGTCTGAAATTTTCTTACCACAGT  440

seq1  AGGTCAGTTATTTCTTAAGATTTTTTAAATATGTGCTAACTTGTAAAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTTATTTCTTAAGATTTTTTAAATATGTGCTAACTTGTAAAATT  490

seq1  TCAGAGATATATCTCATATCATTACTGCAAGATAGAACTTTCAAATGATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATATATCTCATATCATTACTGCAAGATAGAACTTTCAAATGATT  540

seq1  TTAATCATCTGATTGAACCTTTATGCATATATATATCTTGGTGGAAATGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATCTGATTGAACCTTTATGCATATATATATCTTGGTGGAAATGC  590

seq1  CACATTTCCACTAGGAGGCTTTAGTGTTCATCTGCTATTGGGTATGCACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCACTAGGAGGCTTTAGTGTTCATCTGCTATTGGGTATGCACT  640

seq1  CCCATCAGTGACCCTCTGCTCCTTTATGTTTTTATTACCATTGTCTAGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGTGACCCTCTGCTCCTTTATGTTTTTATTACCATTGTCTAGTA  690

seq1  TTTGCAAATAAATAGTAATTTAATTCTTTAGACATATTATTATACAGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATAAATAGTAATTTAATTCTTTAGACATATTATTATACAGCTA  740

seq1  CTTTTGTGTAAAACCCATATTTTAATTGTCTCATTTGTGTGTGGACTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTAAAACCCATATTTTAATTGTCTCATTTGTGTGTGGACTTTA  790

seq1  GACTTCTCTTGTGATAAGTACCCATCCTTTGTCTATTTCAATAGTATAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCTTGTGATAAGTACCCATCCTTTGTCTATTTCAATAGTATAAT  840

seq1  GTTCACAGATGGTTTCTGGGTATTATGAGGGTGATAAGAAATTTGCTCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGATGGTTTCTGGGTATTATGAGGGTGATAAGAAATTTGCTCAT  890

seq1  GTCCTCAGTAAGGGCATCAGAGCCCGTAACTTCTGTGTCATATTTCCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTAAGGGCATCAGAGCCCGTAACTTCTGTGTCATATTTCCAGC  940

seq1  ACAGCATATTGTTATTTTACATATACAAGTGACTCATATTTCACCTTACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATTGTTATTTTACATATACAAGTGACTCATATTTCACCTTACT  990

seq1  ACACTGTTTTCACTTAGAAAATTATATTCCACACACAGTTAAGGTGATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTTCACTTAGAAAATTATATTCCACACACAGTTAAGGTGATAC  1040

seq1  TCACCAATTATGGTCAATTTATTAAGACTGGACTTGTTTAATTTGAAACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATTATGGTCAATTTATTAAGACTGGACTTGTTTAATTTGAAACA  1090

seq1  ATTTATAGCTCACAGCCAACAATATGACATAAAACCTATCCTTATGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGCTCACAGCCAACAATATGACATAAAACCTATCCTTATGAATT  1140

seq1  C  1147
      |
seq2  C  1141