BAC Information

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BAC

Clone NameB6Ng01-241H04
Chromosome2 (Build37)
Map Location 55,220,625 - 55,221,268
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042878, Galnt13, LOC666936
Downstream geneKcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241H04.bB6Ng01-241H04.g
ACCGA051359GA051360
length1,0421,051
definitionB6Ng01-241H04.b B6Ng01-241H04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctacttttattggcttgtgtactaatttgtgattatggtatt
tttaagtactaaaagccaaactaatataatgaataccagatctctgagac
ttcatagagtttcccagacaaggggaaccctctctaggttagaggaggct
ctcaggattcaaggcaggtgacattagctaagatgacttacagtgtgggt
gtagagtctgaagaggccacttcctggagccagaaaggaccctcagtgga
gagataagtacattaaccctcctacaaaattattgacctaaaatttgtcc
tgtttaaaagaaattcagtaacaaagatggagcatatactcacagaatga
ccaaacaataaccatcccaaaatgagacccatcttatgggcaaacaccaa
tacctgacagtattaatgatgctctattatgactgtagacaggagcctca
cataactgtactctgagaagctctactaaacagatgactgaaacaggtga
agatacccacaaccaaattttggatggaggtcaggtgcccttatggaaga
gtttaggaaagtttgaaagccctgaagggtatgagaaccacacaggaaga
tcgaaagtatcaactaacctggaccctgggtgctctcagagactgagcta
acaaccaaaaccacatacaggctggacggaggatcttggcacatatatag
aagacatgcaacacattctccatctgggttccccaacaaatggtccaagg
aggccctacactaaaggtgtagcctgactgtggtattcattccccaacag
ggctgccttgtctggtctcaataagagagattgtgcctaatccttcagag
acttgatgtaccaaggtcgggggatacacaggaggggcccaccctctcag
agaagatggggatggtgatgggagagggactctgtgaggaatgttctggg
gagcaggcagtttgagatataataataaataatgaataataagataccat
gagggcttttcttagtcacttcatttacttcataatgcccta

gaattctctgtttaggtctgtaccccatttttaactggttaaatttgttt
tattcatttctagtttcttcaattctttatatattttggatctttgtcct
ttaaaatacagggttagtaaaactattttcccatgacataggctcctgtt
ttgtcctatttgtggtgtcctttaccttacagaaccttttaagtttcagt
aggtcacatttattggttctccatttttatgcttgcatgtttggtgttct
ggtcaggaagtcttctcctgtgccaatgagatcaagtctgtttcctaaat
tctcttttatcaggtttagtgtatctggttttatgctgatgtcttgaatc
tacttagacttgagttttgtgtagggtacaagatgtggaattatttgcat
tcttatacattgcagatacctagttcaaccagtatcatttgttgaagatg
cttctccccccacccccagtgtataattttggcttctttgacaataattg
agtgcataagtatgtggatgtacttctgggtctttgatttaatttgatga
acctgtctgtttttattactattactctgtagtacagcataaaatcagtg
atagtaatacctgcagaagtctcttattgttcagaattgttttagctatc
atgagcttctttgtttttgtttttgttttatatgaagttgagtagtgttc
tttcaaggtctgtaaccctctagctgcatatgtagcagtagtcagccatc
actggaaagagaggccccttggtattgcaaactttatatgccccagtaca
ggggaatgccagggccaagaagtgggagtaggtgggtagggaagcagggc
ggaagggaactttttgggatagcatttgaaatgttatataaagaaaaaaa
tctttttttgtagtttagtttaaatttattttaagacaatttgttcaaca
gaacaattattacagtaattacttacacaaaatgggtaacacaccgtagt
ttcttctgtgtggctagtagcctttaaggttaatatattacaacattaat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55220625_55221268
seq2: B6Ng01-241H04.g_474_1120

seq1  ATACATTGCAGATACCTAGTTCAACCAGTATCATTTGTTGAAGATGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGCAGATACCTAGTTCAACCAGTATCATTTGTTGAAGATGCTTC  50

seq1  TCCCCCCACCCCCAGTGTATAATTTTGGCTTCTTTGACAATAATTGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCCCAGTGTATAATTTTGGCTTCTTTGACAATAATTGAGTG  100

seq1  CATAAGTATGTGGATGTACTTCTGGGTCTTTGATTTAATTTGATGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTATGTGGATGTACTTCTGGGTCTTTGATTTAATTTGATGAACCT  150

seq1  GTCTGTTTTTATTACTATTACTCTGTAGTACAGCATAAAATCAGTGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTTATTACTATTACTCTGTAGTACAGCATAAAATCAGTGATAG  200

seq1  TAATACCTGCAGAAGTCTCTTATTGTTCAGAATTGTTTTAGCTATCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGCAGAAGTCTCTTATTGTTCAGAATTGTTTTAGCTATCATGA  250

seq1  GCTTCTTTGTTTTTGTTTTTGTTTTATATGAAGTTGAGTAGTGTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGTTTTTGTTTTTGTTTTATATGAAGTTGAGTAGTGTTCTTTC  300

seq1  AAGGTCTGTAACCCTCTAGCTGCATATGTAGCAGTAGTCAGCCATCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGTAACCCTCTAGCTGCATATGTAGCAGTAGTCAGCCATCACTG  350

seq1  GAAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGG  400

seq1  AATGCCAGGGCCAAGAAGTGGGAGTAGGTGGGTAGGGAAGCAGGGCGG-A  449
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGCCAGGGCCAAGAAGTGGGAGTAGGTGGGTAGGGAAGCAGGGCGGAA  450

seq1  GGGAAC-TTTTGGGATAGCATTTGAAATG-TATATAAAG-AAAAAATCTT  496
      |||||| |||||||||||||||||||||| ||||||||| ||||||||||
seq2  GGGAACTTTTTGGGATAGCATTTGAAATGTTATATAAAGAAAAAAATCTT  500

seq1  TTTTTGTAGTTTAGTTTAAAATTTATTTTAAAGACAATTTGTTCAACAGA  546
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTTTTGTAGTTTAGTTT-AAATTTATTTT-AAGACAATTTGTTCAACAGA  548

seq1  ACAATTATTACAAGTAATTACTTACACAAAATGGGTAAACACA-CGTAGT  595
      ||||||||||| |||||||||||||||||||||||| |||||| ||||||
seq2  ACAATTATTAC-AGTAATTACTTACACAAAATGGGT-AACACACCGTAGT  596

seq1  TTCTTCTGTGT-GCTAGTAGCTTTTAA-GTTAATATAATTAC-ACATTAA  642
      ||||||||||| ||||||||| ||||| |||||||| ||||| |||||||
seq2  TTCTTCTGTGTGGCTAGTAGCCTTTAAGGTTAATAT-ATTACAACATTAA  645

seq1  TC  644
      ||
seq2  TC  647


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