BAC Information

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BAC

Clone NameB6Ng01-241L01
Chromosome2 (Build37)
Map Location 169,310,343 - 169,500,275
singlet/doubletdoublet
Overlap geneEG668954, Tshz2
Upstream geneNfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneLOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241L01.bB6Ng01-241L01.g
ACCGA051540GA051541
length897564
definitionB6Ng01-241L01.b B6Ng01-241L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,499,379 - 169,500,275)(169,310,343 - 169,310,912)
sequence
gaattctcgtctcatccgggctcttcgtggtaaagaaaactgacatggcc
ctccatagactataatctcaaggacaatactaataacccctcacacgact
gttgagactattgtctgtgcttcagtagctgagggttgggaggctggatc
ataacaagctaagagaaaggccatttcctgtttaaacaggaaggtgctga
acttcccgtacagttgtcaccttaaatacttcagtatccttcttctaccc
tgctttttgccacagcgggtcacctatttatttctatgacaccaatgcta
aaattatgagttatggctgtcagagaatgctaggtttcctcacaggaaat
gtccaacttctaggagataggatggactgcgaggaagtcatccatctctt
gttccactttgggtcacagacttttcctaccagtagtggcctcaaggaac
gaatggcaccagtttgacccctcaatgatcagacggcatgggtgtgaccc
atgcatttttactgcaggggttccatgtgaacattgttcttagacatttt
gttttccttctaatcaagccaaaatgaaatcagaagaaaaacaagtcgct
gaaagttttcactaagtgaaatgtgtccaactaaaagaaaaaatccctgt
acactgagaggacttagggatggtggctgatttttgccattctttgacat
cttagagttcagcccgctgctgtagagaagggcatacccagctggcatct
gagagagaagccacaggaggggagcgtggagctgcaaagcagaatgaggc
ctgaggagaagaggaaagggcatcaccagtgtgtgcgccctggacctgga
aatgagcccaagtcttctgtgcagtgtgtgtgtgtgtgtgtgtgtgt
tgtcacttttatgggccagagtgattaatttgtttgtttgggtccctcaa
ttaaggccacaaacagagtgaggtgtcgggagcaagttagcagtatcgtc
tggcacggagcagtcaactgccgtggagaagcagaggcttgagtggctgc
ccataaccttgagccttagcaccacaccaggcccaccctacctggggtta
gcgtctgatgtccctctattaatagttctaagcttgtttttactgataac
ccttttcactgcccagctacgctggagaagcctgggttagagttagcagg
gccatcccgatattttcctgggctatctaattattttgaactcaatttga
tgagatgtagaaaagaaataaacccatgagccatttaccttgctagagag
atggctccctttgtctgtgaaaatcaaaatcaaaatcaaaataataatga
agaagaaggagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagag
gaagaggaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169499379_169500275
seq2: B6Ng01-241L01.b_42_938 (reverse)

seq1  ACACACACACACACACACACACACTGCACAGAAGACTTGGGCTCATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTGCACAGAAGACTTGGGCTCATTTCC  50

seq1  AGGTCCAGGGCGCACACACTGGTGATGCCCTTTCCTCTTCTCCTCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGGGCGCACACACTGGTGATGCCCTTTCCTCTTCTCCTCAGGCC  100

seq1  TCATTCTGCTTTGCAGCTCCACGCTCCCCTCCTGTGGCTTCTCTCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGCTTTGCAGCTCCACGCTCCCCTCCTGTGGCTTCTCTCTCAGA  150

seq1  TGCCAGCTGGGTATGCCCTTCTCTACAGCAGCGGGCTGAACTCTAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTGGGTATGCCCTTCTCTACAGCAGCGGGCTGAACTCTAAGATG  200

seq1  TCAAAGAATGGCAAAAATCAGCCACCATCCCTAAGTCCTCTCAGTGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATGGCAAAAATCAGCCACCATCCCTAAGTCCTCTCAGTGTACA  250

seq1  GGGATTTTTTCTTTTAGTTGGACACATTTCACTTAGTGAAAACTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTTCTTTTAGTTGGACACATTTCACTTAGTGAAAACTTTCAGC  300

seq1  GACTTGTTTTTCTTCTGATTTCATTTTGGCTTGATTAGAAGGAAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTTTTCTTCTGATTTCATTTTGGCTTGATTAGAAGGAAAACAAA  350

seq1  ATGTCTAAGAACAATGTTCACATGGAACCCCTGCAGTAAAAATGCATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGAACAATGTTCACATGGAACCCCTGCAGTAAAAATGCATGGG  400

seq1  TCACACCCATGCCGTCTGATCATTGAGGGGTCAAACTGGTGCCATTCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCATGCCGTCTGATCATTGAGGGGTCAAACTGGTGCCATTCGTT  450

seq1  CCTTGAGGCCACTACTGGTAGGAAAAGTCTGTGACCCAAAGTGGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCCACTACTGGTAGGAAAAGTCTGTGACCCAAAGTGGAACAAG  500

seq1  AGATGGATGACTTCCTCGCAGTCCATCCTATCTCCTAGAAGTTGGACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGACTTCCTCGCAGTCCATCCTATCTCCTAGAAGTTGGACATT  550

seq1  TCCTGTGAGGAAACCTAGCATTCTCTGACAGCCATAACTCATAATTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAGGAAACCTAGCATTCTCTGACAGCCATAACTCATAATTTTAG  600

seq1  CATTGGTGTCATAGAAATAAATAGGTGACCCGCTGTGGCAAAAAGCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTCATAGAAATAAATAGGTGACCCGCTGTGGCAAAAAGCAGGG  650

seq1  TAGAAGAAGGATACTGAAGTATTTAAGGTGACAACTGTACGGGAAGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAGGATACTGAAGTATTTAAGGTGACAACTGTACGGGAAGTTCA  700

seq1  GCACCTTCCTGTTTAAACAGGAAATGGCCTTTCTCTTAGCTTGTTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCCTGTTTAAACAGGAAATGGCCTTTCTCTTAGCTTGTTATGAT  750

seq1  CCAGCCTCCCAACCCTCAGCTACTGAAGCACAGACAATAGTCTCAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCCAACCCTCAGCTACTGAAGCACAGACAATAGTCTCAACAGT  800

seq1  CGTGTGAGGGGTTATTAGTATTGTCCTTGAGATTATAGTCTATGGAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGGGGTTATTAGTATTGTCCTTGAGATTATAGTCTATGGAGGGC  850

seq1  CATGTCAGTTTTCTTTACCACGAAGAGCCCGGATGAGACGAGAATTC  897
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTTTTCTTTACCACGAAGAGCCCGGATGAGACGAGAATTC  897

seq1: chr2_169310343_169310912
seq2: B6Ng01-241L01.g_68_637

seq1  GAATTCTGTCACTTTTATGGGCCAGAGTGATTAATTTGTTTGTTTGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACTTTTATGGGCCAGAGTGATTAATTTGTTTGTTTGGGTC  50

seq1  CCTCAATTAAGGCCACAAACAGAGTGAGGTGTCGGGAGCAAGTTAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTAAGGCCACAAACAGAGTGAGGTGTCGGGAGCAAGTTAGCAGT  100

seq1  ATCGTCTGGCACGGAGCAGTCAACTGCCGTGGAGAAGCAGAGGCTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCTGGCACGGAGCAGTCAACTGCCGTGGAGAAGCAGAGGCTTGAGT  150

seq1  GGCTGCCCATAACCTTGAGCCTTAGCACCACACCAGGCCCACCCTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCATAACCTTGAGCCTTAGCACCACACCAGGCCCACCCTACCTG  200

seq1  GGGTTAGCGTCTGATGTCCCTCTATTAATAGTTCTAAGCTTGTTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCGTCTGATGTCCCTCTATTAATAGTTCTAAGCTTGTTTTTACT  250

seq1  GATAACCCTTTTCACTGCCCAGCTACGCTGGAGAAGCCTGGGTTAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCCTTTTCACTGCCCAGCTACGCTGGAGAAGCCTGGGTTAGAGTT  300

seq1  AGCAGGGCCATCCCGATATTTTCCTGGGCTATCTAATTATTTTGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCCATCCCGATATTTTCCTGGGCTATCTAATTATTTTGAACTCA  350

seq1  ATTTGATGAGATGTAGAAAAGAAATAAACCCATGAGCCATTTACCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGAGATGTAGAAAAGAAATAAACCCATGAGCCATTTACCTTGCT  400

seq1  AGAGAGATGGCTCCCTTTGTCTGTGAAAATCAAAATCAAAATCAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGCTCCCTTTGTCTGTGAAAATCAAAATCAAAATCAAAATAA  450

seq1  TAATGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  500

seq1  AAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAG  550

seq1  GAAGAGGAAGAGGAAGAGGA  570
      ||||||||||||||||||||
seq2  GAAGAGGAAGAGGAAGAGGA  570