BAC Information

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BAC

Clone NameB6Ng01-242A16
Chromosome2 (Build37)
Map Location 131,221,054 - 131,351,172
singlet/doubletdoublet
Overlap geneLOC100043463, Smox
Upstream geneCpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24
Downstream geneAdra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A16.bB6Ng01-242A16.g
ACCGA051798GA051799
length1,1721,140
definitionB6Ng01-242A16.b B6Ng01-242A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,350,015 - 131,351,172)(131,221,054 - 131,222,199)
sequence
gaattcaccttcattccacgcagcctgcctaccattcaaccaagctccaa
gaaaggcaaataggtagaaccaggcttatcctaaggaagtgtgcactggg
cagggagaagtcttccaggggaatctcactcagcaggcacaaacagaggg
gtaaagggatgtctcctcaataaacctaacagccataactccttacacca
agccccagtcagagatgggagcaaacacacagagagcctttgaactgagg
agagaagcaaaggagcgtgggaagggtcacttcttttattatcccaaaat
gcaaagtattgaaggcacttgcaataacatgagagaggaaaaaagcagga
agcagaaccccacctggtcattacccagcctggagaaaaagaaaagctct
cgggccaggtctgacgtcagcccggtgtccactacagaaggtaaaattcc
attctacagacaattaggaaattaagagcacgggggcaagggacgaggac
cagcagtcacgagttagtggttcttcaaggaacacatttggcagtgagga
cacctttcagggcccctgctggaagaggtctcggtacatctcgatgagcc
gggcggcctcgcgctggccagagagcagagcaccgtgggtggtggagtag
tacttgcggtgtgtggcctccccggagaagagcacctgcatgggctaagt
gggaggaaggggaagtaagcatggagaagcaacagaggcagcgggctccc
tgtcagccccggaacccccactcttgccaggcagacatgagtgaacagaa
cgcagtattctgtttccatggggtgaagggtcacccacccacctcgccac
cttcccttcccttccccatacacccatgcgtaatgtttccttctgtccca
aggctgtcagaaaggcctggctctatagtcccaaaggctccattcacctc
ttagcaattagttctaacccctccttcagcctttattttcttagagagaa
tttataccaccttgcttctgaggccagcctgcaaagatgaaaatgaaaac
tatgcatgtaaagcacttagaatctggaaagaaatgttaaacaaagctag
gtggtaattaaccaactttttatggaccccatactaaaggtcaaggattg
ttctggtccttggaatggtaaa
gaattctcccatttctgcccagtattcttctttaaggagatgtctgtctg
tctgtctgtctgtctgtccacttactcgtatacccatgacctctaaagca
ttgttacacttactcttccctgtctttttctttgtgttttgtgcagtgtt
gggaacgaagccccaggtcttgctcacactaggcaagtgctcttctattg
agccacatccacagcttgtatctcacatcggaaggtcagtctgctcttgt
tacagacagcctgaagcccagattgcacttcactgcctgccctctctcct
ttgaaagcagttcttttctaatgttctttctagattatgagaatgcagtt
ctgtgcacttggtctagccctaccttacctctcaatacagcaaaaatggt
gaggcccagccccccacatccagagctaaaattagcattcctggctgggt
cagttttcttgccattttagggcccttccctactcaatggctctcccttg
tgacttgagctagtcatgagaccacctccttctcactatctggaacctga
tgaactggaatggcttaggacaccacccggatctctggtctctttaacac
agcatttactgacagggcatttggtccggatcagacactgactctagcct
agatggagggaagtttattaattgcttacagggtgccttctggggttcat
cagaagtactgggcatgagaggaacgtgcctgtgagctaccataggcacc
actgtccttgtggctgtgttctcgtctgtccctgcctctctgtgatgcca
gactctgagctctgtgaagcgtgactgagacagggctgaacctggctctg
ggcctaagccctcatcaccaaagaagaccaatcagtatgctgggttcctc
ctccaaacgatgggaagggttaggtgttcagaagagaaaggatgacagtc
cctctccctcctgcccaccacagtatcacaacatttagagtctgtcatga
gcagctggatgatccaaggcagaatctacccctcacagctatcttttctt
taaatgaaaaaaataaattcttttcttacagaaataattttgatcaacgt
tttctccttctcagttcttcagaatcctcctgccttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131350015_131351172
seq2: B6Ng01-242A16.b_50_1221 (reverse)

seq1  TTTACCA-TCCAAGTGCCCAGAACAATCCCTGGACCCTAGTAGGGGCTCC  49
      ||||||| |||||| | |||||||||||| ||  |  ||||| ||| |||
seq2  TTTACCATTCCAAG-GACCAGAACAATCCTTGACCTTTAGTATGGGGTCC  49

seq1  ATAAAGGTTTGTTAAATTACCACCTAACTTTGTTT-ACATT--CTTCCAG  96
      |||||   ||| | |||||||||||| |||||||| |||||   ||||||
seq2  ATAAAAAGTTGGTTAATTACCACCTAGCTTTGTTTAACATTTCTTTCCAG  99

seq1  ATTCTAAGTGC-TTACATGCATAG-TTTCA-TTTCATCTTTGCA-GCTGG  142
      ||||||||||| |||||||||||| ||||| ||||||||||||| |||||
seq2  ATTCTAAGTGCTTTACATGCATAGTTTTCATTTTCATCTTTGCAGGCTGG  149

seq1  CCTCAGAAGC-AGGTGGTATAAA-TCTCTCTAAGAAAATAAAGGCTG-AG  189
      |||||||||| |||||||||||| ||||||||||||||||||||||| ||
seq2  CCTCAGAAGCAAGGTGGTATAAATTCTCTCTAAGAAAATAAAGGCTGAAG  199

seq1  GA-GGGTTAG-ACT-ATTGCTAAGAGGTGAATGGAGCCTTTGGGACTATA  236
      || ||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTAGAACTAATTGCTAAGAGGTGAATGGAGCCTTTGGGACTATA  249

seq1  GAGCCAGGCC-TTCTGACAGCCTTGGGACAGAAGG-AACATTACGCATGG  284
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  GAGCCAGGCCTTTCTGACAGCCTTGGGACAGAAGGAAACATTACGCATGG  299

seq1  GTGTATGGGGAAGGGAAGGGAAGGTGGCGAGGTGGGTGGGTGACCCTTCA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGGGAAGGGAAGGGAAGGTGGCGAGGTGGGTGGGTGACCCTTCA  349

seq1  CCCCATGGAAACAGAATACCTGCGTTCTGTTCACTCATGTCTGCCTGGCA  384
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCATGGAAACAGAATA-CTGCGTTCTGTTCACTCATGTCTGCCTGGCA  398

seq1  AGAGTGGGGGTTCCGGGGCTGACAGGGAGCCCGCTGCCTCTGTTGCTTCT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGGGTTCCGGGGCTGACAGGGAGCCCGCTGCCTCTGTTGCTTCT  448

seq1  CCATGCTTACTTCCCCTTCCTCCCACTTAGCCCATGCAGGTGCTCTTCTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTACTTCCCCTTCCTCCCACTTAGCCCATGCAGGTGCTCTTCTC  498

seq1  CGGGGAGGCCACACACCGCAAGTACTACTCCACCACCCACGGTGCTCTGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGCCACACACCGCAAGTACTACTCCACCACCCACGGTGCTCTGC  548

seq1  TCTCTGGCCAGCGCGAGGCCGCCCGGCTCATCGAGATGTACCGAGACCTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCAGCGCGAGGCCGCCCGGCTCATCGAGATGTACCGAGACCTC  598

seq1  TTCCAGCAGGGGCCCTGAAAGGTGTCCTCACTGCCAAATGTGTTCCTTGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAGGGGCCCTGAAAGGTGTCCTCACTGCCAAATGTGTTCCTTGA  648

seq1  AGAACCACTAACTCGTGACTGCTGGTCCTCGTCCCTTGCCCCCGTGCTCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACTAACTCGTGACTGCTGGTCCTCGTCCCTTGCCCCCGTGCTCT  698

seq1  TAATTTCCTAATTGTCTGTAGAATGGAATTTTACCTTCTGTAGTGGACAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCTAATTGTCTGTAGAATGGAATTTTACCTTCTGTAGTGGACAC  748

seq1  CGGGCTGACGTCAGACCTGGCCCGAGAGCTTTTCTTTTTCTCCAGGCTGG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGACGTCAGACCTGGCCCGAGAGCTTTTCTTTTTCTCCAGGCTGG  798

seq1  GTAATGACCAGGTGGGGTTCTGCTTCCTGCTTTTTTCCTCTCTCATGTTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGACCAGGTGGGGTTCTGCTTCCTGCTTTTTTCCTCTCTCATGTTA  848

seq1  TTGCAAGTGCCTTCAATACTTTGCATTTTGGGATAATAAAAGAAGTGACC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTGCCTTCAATACTTTGCATTTTGGGATAATAAAAGAAGTGACC  898

seq1  CTTCCCACGCTCCTTTGCTTCTCTCCTCAGTTCAAAGGCTCTCTGTGTGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACGCTCCTTTGCTTCTCTCCTCAGTTCAAAGGCTCTCTGTGTGT  948

seq1  TTGCTCCCATCTCTGACTGGGGCTTGGTGTAAGGAGTTATGGCTGTTAGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCATCTCTGACTGGGGCTTGGTGTAAGGAGTTATGGCTGTTAGG  998

seq1  TTTATTGAGGAGACATCCCTTTACCCCTCTGTTTGTGCCTGCTGAGTGAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGGAGACATCCCTTTACCCCTCTGTTTGTGCCTGCTGAGTGAG  1048

seq1  ATTCCCCTGGAAGACTTCTCCCTGCCCAGTGCACACTTCCTTAGGATAAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGGAAGACTTCTCCCTGCCCAGTGCACACTTCCTTAGGATAAG  1098

seq1  CCTGGTTCTACCTATTTGCCTTTCTTGGAGCTTGGTTGAATGGTAGGCAG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCTACCTATTTGCCTTTCTTGGAGCTTGGTTGAATGGTAGGCAG  1148

seq1  GCTGCGTGGAATGAAGGTGAATTC  1158
      ||||||||||||||||||||||||
seq2  GCTGCGTGGAATGAAGGTGAATTC  1172

seq1: chr2_131221054_131222199
seq2: B6Ng01-242A16.g_66_1205

seq1  GAATTCTCCCATTTCTGCCCAGTATTCTTCTTTAAGGAGATGTCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATTTCTGCCCAGTATTCTTCTTTAAGGAGATGTCTGTCTG  50

seq1  TCTGTCTGTCTGTCTGTCCACTTACTCGTATACCCATGACCTCTAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGTCCACTTACTCGTATACCCATGACCTCTAAAGCA  100

seq1  TTGTTACACTTACTCTTCCCTGTCTTTTTCTTTGTGTTTTGTGCAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACACTTACTCTTCCCTGTCTTTTTCTTTGTGTTTTGTGCAGTGTT  150

seq1  GGGAACGAAGCCCCAGGTCTTGCTCACACTAGGCAAGTGCTCTTCTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGAAGCCCCAGGTCTTGCTCACACTAGGCAAGTGCTCTTCTATTG  200

seq1  AGCCACATCCACAGCTTGTATCTCACATCGGAAGGTCAGTCTGCTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATCCACAGCTTGTATCTCACATCGGAAGGTCAGTCTGCTCTTGT  250

seq1  TACAGACAGCCTGAAGCCCAGATTGCACTTCACTGCCTGCCCTCTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAGCCTGAAGCCCAGATTGCACTTCACTGCCTGCCCTCTCTCCT  300

seq1  TTGAAAGCAGTTCTTTTCTAATGTTCTTTCTAGATTATGAGAATGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAGTTCTTTTCTAATGTTCTTTCTAGATTATGAGAATGCAGTT  350

seq1  CTGTGCACTTGGTCTAGCCCTACCTTACCTCTCAATACAGCAAAAATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACTTGGTCTAGCCCTACCTTACCTCTCAATACAGCAAAAATGGT  400

seq1  GAGGCCCAGCCCCCCACATCCAGAGCTAAAATTAGCATTCCTGGCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAGCCCCCCACATCCAGAGCTAAAATTAGCATTCCTGGCTGGGT  450

seq1  CAGTTTTCTTGCCATTTTAGGGCCCTTCCCTACTCAATGGCTCTCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTTGCCATTTTAGGGCCCTTCCCTACTCAATGGCTCTCCCTTG  500

seq1  TGACTTGAGCTAGTCATGAGACCACCTCCTTCTCACTATCTGGAACCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAGCTAGTCATGAGACCACCTCCTTCTCACTATCTGGAACCTGA  550

seq1  TGAACTGGAATGGCTTAGGACACCACCCGGATCTCTGGTCTCTTTAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGAATGGCTTAGGACACCACCCGGATCTCTGGTCTCTTTAACAC  600

seq1  AGCATTTACTGACAGGGCATTTGGTCCGGATCAGACACTGACTCTAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTACTGACAGGGCATTTGGTCCGGATCAGACACTGACTCTAGCCT  650

seq1  AGATGGAGGGAAGTTTATTAATTGCTTACAGGGTGCCTTCTGGGGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGGAAGTTTATTAATTGCTTACAGGGTGCCTTCTGGGGTTCAT  700

seq1  CAGAAGTACTGGGCATGAGAGGAACGTGCCTGTGAGCTACCATAGGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACTGGGCATGAGAGGAACGTGCCTGTGAGCTACCATAGGCACC  750

seq1  ACTGTCCTTGTGGCTGTGTTCTCGTCTGTCCCTGCCTCTCTGTGATGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTTGTGGCTGTGTTCTCGTCTGTCCCTGCCTCTCTGTGATGCCA  800

seq1  GACTCTGAGCTCTGTGAAGCGTGACTGAGACAGGGCTGAACCTGGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGCTCTGTGAAGCGTGACTGAGACAGGGCTGAACCTGGCTCTG  850

seq1  GGCCTAAGCCCTCATCACCAAAGAAGACCAATCAGTATGCTGGGTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGCCCTCATCACCAAAGAAGACCAATCAGTATGCTGGGTTCCTC  900

seq1  CTCCAAACGATGGGAAGGGTTTAGGTGTTCAGAAGAAGAAAGGATGACAG  950
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CTCCAAACGATGGGAAGGG-TTAGGTGTTCAGAAG-AGAAAGGATGACAG  948

seq1  TCCCTCTCCCTCCTGCCCACCACAGTATCAC-ACATTTAGAGTCTGTCAT  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCTCTCCCTCCTGCCCACCACAGTATCACAACATTTAGAGTCTGTCAT  998

seq1  GAGCAGCTGGATGATCCAA-GCAGAATCTACCCTCAACAGCTATCTTTTT  1048
      ||||||||||||||||||| |||||||||||||   ||||||||||||  
seq2  GAGCAGCTGGATGATCCAAGGCAGAATCTACCCCTCACAGCTATCTTT--  1046

seq1  CTTTTTAATTGAAAAAAATTAAAATTTCTTTCCTACAGAATATATTTTGA  1098
       | ||||| ||||||||||  |||||  |||| |||||||   |||||||
seq2  -TCTTTAAATGAAAAAAAT--AAATTCTTTTCTTACAGAAATAATTTTGA  1093

seq1  TC-ACGTTTTTCTCTTCTCCAATTTCTTCCAGATCCTCCTGCCTCCCTC  1146
      || |||||||   ||||||  | ||||||   |||||||||||| ||||
seq2  TCAACGTTTTCTCCTTCTC--AGTTCTTCAGAATCCTCCTGCCTTCCTC  1140