BAC Information

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BAC

Clone NameB6Ng01-242H09
Chromosome2 (Build37)
Map Location 170,033,720 - 170,193,917
singlet/doubletdoublet
Overlap geneSilg111, LOC100043739, Bcas1
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
Downstream geneLOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H09.bB6Ng01-242H09.g
ACCGA052096GA052097
length996928
definitionB6Ng01-242H09.b B6Ng01-242H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,193,316 - 170,193,917)(170,033,720 - 170,034,642)
sequence
gaattctctaagctttgggggagaaaccagtgtatcccttcatcccagga
gccccatagtccctgcggatcaggtgttaaactccggagttgatctgaaa
cagcgcttgagccagctactctctgccccggcacagtctctctgcctctg
gctctaggctagctctagcagtgaacaatcttggtcttcccagctcaggt
tctcttgtctctggagccactagttccttctcagccatccacccctgtgg
tcggcagtcgcaatccccctcaacccagcaaatcaaaactctagaagctt
ataattaaacagtcagatttatgtatcaataaattcttaattcacaagat
gcccacacaataaattcagagccaattgataacggtacaagctgcccatc
taggttagacaagttaccccaactattttatccctatatgatgtcatatc
tatctgtggctatttaaaaccatgctggttctgaatcatcctgtccaaca
tcctccttcttgcttccttccctctgttccctctctgcaactcttagcac
tgcctcccttttccctgcccaatcacaggcctcccactgcactaatattt
aaattaattagacagaaaaaaatcctgccacaccatctcccacccttcca
cagcagtatggcaacagctcttctgtggccacaaggtaacagatgtaagg
atgaaatcccaggagaccaaggacagcagagccaaaggatgcagagggtc
caagttcttagaggatggcagagcctcgaatatgctcaaaaacattttgc
tgttggtcgttctgtttcactggccaggtaggaaaaccccccatcttcct
caaagtggctgctaccctctggtatgactttagccaagttagcccactgt
ttgtaatccttatttgtaaatggggataaacattaccttttgtaaccttg
tcccaaggtgttatgtaagaagggcattgttatgacacagacatgg
gaattcactctgtagaccaggccaccctcacactcagcaatctgcctgcc
tctgcccctttagtgctagaattaaagttgtgtactgatatgccctggca
ccatacacacagacacacgtgcacacaccattaagaccattttaaaagga
aagaaaagcaagacacacccggaggagagctttaacgcaagagagtgtat
tttcatgtcgtgtagttactgtcagtcatcaatagctcgtgcattaccat
ctgctgggagtttgatcatgacgtcatcaggactatgggtcattgagaag
aatgaaggtatatgttgctgctgcacgaactctgacctacaacactgaca
gtgtagtttctagaacattctcaagactcttctcttgaaacaatctccct
tgcctccccccaatgcagtactcactgccactctctagccctgggttcaa
tcagtttgtttattgattacctttccttccttcccttcctttgtttgttt
gtttgtctttcgagatagggtttctctgtatagccctggctgtcctggaa
ctcactctgtagaccaggctggcctcgaactcagaaatccacctgcctct
gcctcccaagtgctgggattaaaggcgtgtggcaccaccacgcccagctg
attacttttctttatagaaagtccctctttgtagtccaggctgctcttga
acttacaggtgtcctcctgcctcagccctcctgaatgttgggattacagt
tgtgcaccaccatgcctgtcttggacttggcttttttttttgctaacagt
ctttggcatcttacatgttcaataatgattttacctgctgtctcccaaca
gggttcaggaaggttgccgaattggccgatacggtatctgacagtctagc
acagtgccctggcacactaaaaccgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_170193316_170193917
seq2: B6Ng01-242H09.b_42_643 (reverse)

seq1  TTAAATATTAGTGCAGTGGGAGGCCTGTGATTGGGCAGGGAAAAGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTAGTGCAGTGGGAGGCCTGTGATTGGGCAGGGAAAAGGGAGG  50

seq1  CAGTGCTAAGAGTTGCAGAGAGGGAACAGAGGGAAGGAAGCAAGAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAAGAGTTGCAGAGAGGGAACAGAGGGAAGGAAGCAAGAAGGAG  100

seq1  GATGTTGGACAGGATGATTCAGAACCAGCATGGTTTTAAATAGCCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGACAGGATGATTCAGAACCAGCATGGTTTTAAATAGCCACAGA  150

seq1  TAGATATGACATCATATAGGGATAAAATAGTTGGGGTAACTTGTCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGACATCATATAGGGATAAAATAGTTGGGGTAACTTGTCTAACC  200

seq1  TAGATGGGCAGCTTGTACCGTTATCAATTGGCTCTGAATTTATTGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGCAGCTTGTACCGTTATCAATTGGCTCTGAATTTATTGTGTGG  250

seq1  GCATCTTGTGAATTAAGAATTTATTGATACATAAATCTGACTGTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGTGAATTAAGAATTTATTGATACATAAATCTGACTGTTTAATT  300

seq1  ATAAGCTTCTAGAGTTTTGATTTGCTGGGTTGAGGGGGATTGTGACTGCC  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAAGCTTCTAGAGTTTTGATTTGCTGGGTTGAGGGGGATTGCGACTGCC  350

seq1  GACCACAGGGGTGGATGGCTGAGAAGGAACTAGTGGCTCCAGAGACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGGGTGGATGGCTGAGAAGGAACTAGTGGCTCCAGAGACAAGA  400

seq1  GAACCTGAGCTGGGAAGACCAAGATTGTTCACTGCTAGAGCTAGCCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGCTGGGAAGACCAAGATTGTTCACTGCTAGAGCTAGCCTAGA  450

seq1  GCCAGAGGCAGAGAGACTGTGCCGGGGCAGAGAGTAGCTGGCTCAAGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGCAGAGAGACTGTGCCGGGGCAGAGAGTAGCTGGCTCAAGCGC  500

seq1  TGTTTCAGATCAACTCCGGAGTTTAACACCTGAACCGCAGGGACTATGGG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTTCAGATCAACTCCGGAGTTTAACACCTGATCCGCAGGGACTATGGG  550

seq1  GCTCCTGGGATGAAGGGATACACTGGTTTCTCCCCCAAAGCTTAGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGATGAAGGGATACACTGGTTTCTCCCCCAAAGCTTAGAGAAT  600

seq1  TC  602
      ||
seq2  TC  602

seq1: chr2_170033720_170034642
seq2: B6Ng01-242H09.g_68_995

seq1  GAATTCACTCTGTAGACCAGGCCACCCTCACACTCAGCAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCCACCCTCACACTCAGCAATCTGCCTGCC  50

seq1  TCTGCCCCTTTAGTGCTAGAATTAAAGTTGTGTACTGATATGCCCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCTTTAGTGCTAGAATTAAAGTTGTGTACTGATATGCCCTGGCA  100

seq1  CCATACACACAGACACACGTGCACACACCATTAAGACCATTTTAAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACACAGACACACGTGCACACACCATTAAGACCATTTTAAAAGGA  150

seq1  AAGAAAAGCAAGACACACCCGGAGGAGAGCTTTAACGCAGGAGAGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAAAAGCAAGACACACCCGGAGGAGAGCTTTAACGCAAGAGAGTGTAT  200

seq1  TTTCATGTCGTGTAGTTACTGTCAGTCATCGATAGCTCGTGCATTACCAT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCATGTCGTGTAGTTACTGTCAGTCATCAATAGCTCGTGCATTACCAT  250

seq1  CTGCTGGGAGTTTGATCATGACGTCATCAGGACTATGGGTCATTGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAGTTTGATCATGACGTCATCAGGACTATGGGTCATTGAGAAG  300

seq1  AATGAAGGTATATATTGCTGCTGCACGAACTCTGACCTACAACACTGACA  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGTATATGTTGCTGCTGCACGAACTCTGACCTACAACACTGACA  350

seq1  GTGTAGTTTCTAGAACATTCTCAAGACTCTTCTCTTGAAGCAGTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  GTGTAGTTTCTAGAACATTCTCAAGACTCTTCTCTTGAAACAATCTCCCT  400

seq1  TGCCTCCCCCCAATGCAGTACTCACTGCCACTCTCTAGCCCTGGGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCCCCAATGCAGTACTCACTGCCACTCTCTAGCCCTGGGTTCAA  450

seq1  TCAGTTTGTTTATTGATTACCTTTCCTTCCTTCCCTTCCTTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGTTTATTGATTACCTTTCCTTCCTTCCCTTCCTTTGTTTGTTT  500

seq1  GTTTGTCTTTCGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTTCGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  550

seq1  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCT  600

seq1  GCCTCCCAAGTGCTGGGATTAAAGGCGTGTGGCACCACCACGCCCAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCTGGGATTAAAGGCGTGTGGCACCACCACGCCCAGCTG  650

seq1  ATTACTTTTCTTTATAGAAAGTCCCTCTTTGTAGTCCAGGCTGCTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTTCTTTATAGAAAGTCCCTCTTTGTAGTCCAGGCTGCTCTTGA  700

seq1  ACTTACAGGTGTCCTCCTGCCTCAG-CCTCCTGAATGTTGGGATTACAGT  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTACAGGTGTCCTCCTGCCTCAGCCCTCCTGAATGTTGGGATTACAGT  750

seq1  TGTGCACCACCATGCCTGTCTTGGACTTGGCTTTTTTTTTT-CTAACAGT  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGCACCACCATGCCTGTCTTGGACTTGGCTTTTTTTTTTGCTAACAGT  800

seq1  CTTTGGCATCTTACATGTTCAATATTGA-TTTACCTGCTGTCTCCCAACA  847
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  CTTTGGCATCTTACATGTTCAATAATGATTTTACCTGCTGTCTCCCAACA  850

seq1  GGGTTCAGG-AGGGTGGCGAATTGGCCGTTACGGTATCCTAAAGCCTAGA  896
      ||||||||| ||| || ||||||||||| |||||||||  | || |||| 
seq2  GGGTTCAGGAAGGTTGCCGAATTGGCCGATACGGTATCTGACAGTCTAGC  900

seq1  ACAGTG-CCTGGCACACTAAAACCGTGC  923
      |||||| |||||||||||||||||| ||
seq2  ACAGTGCCCTGGCACACTAAAACCGGGC  928