BAC Information

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BAC

Clone NameB6Ng01-242O24
Chromosome2 (Build37)
Map Location 19,403,642 - 19,404,783
singlet/doubletsinglet
Overlap gene4921504E06Rik
Upstream geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534
Downstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242O24.bB6Ng01-242O24.g
ACCGA052453GA052454
length1,1901,134
definitionB6Ng01-242O24.b B6Ng01-242O24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcaaagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaatcctccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttttaacacta
gaaaaagttcaaggccaaacataccttgtcgcgcccgctctcgaccagca
agaacgacgctgctacaggatccttctgcacacatttattcagtcctgtt
tcttcttgtttatatctcccttgtttatatctcccttgtttttatatctc
ccttgtttatatctcccttgtttatatatctcccttgtttttatatctcc
cccgaaccctgggcctctcactccttttatactctctctcatccacgcac
cgcaggccacgccccctcgccagtcacgaggcttcagctaatcagggcag
caggggcaaatctccaccaaattggattcacctgtatcctggtacacctg
cgcagcactcaagatgtttgtgtcttatatgaggaagtcaggtgcaagtc
atatgacttagctgcagtccctggcgcctttgggactgccgccacacccg
ctccccacaattcccccttttttcttttttggcagagagaatgtctgtag
atagccccccacagccatgccccttacccgtccttgggtgacaaacagca
ttggtttgatccctgtcttaggttggtgacatgcccagggagtcttattc
actgactacctctcaatcatgccagcacacctgggggagattgtgtttgc
ttgcggcagtgcatcaagggccaggatgtattaaccttatgggccagatc
ttaattgctgcagcaagctcatgggggtgagtagagtctgaatccccagt
gtgtgcaggcataggggtcttaaccaaaaccatcctaggcctactcacta
gagagtcttggcagcctccggtgcgctttcctcgagagga
gaattccttctattgagtttaaaagaagtttgcttgttaaaaagtgcaat
tcagatgcttctctgttttgactggcagattaagttacaaaaatgttctc
tctaccatgggtgtccctttctagaatgcatctaattttaatcatatgct
gctcaatcacgcataggtataagacggtagacagtggatccttcctaaaa
ggccactgtgatattatagtttgccctattaggcacacatccaaacactt
gcttaagacagagaggcttcctaccctgtaaccagacacaaagaaagtgc
cagtgaatagaatctgtgtaagtttgatgcttgttaaggaaaggagatgg
cattgttcagtgggggttggtgttcacctctacacagattggggtcctca
gttaacaggtggctaggtgcataattcagagaatgagctgcacccatagc
actcaaagacaaaagtctcagaacgccgagtgcttagttagaagaaggtt
atgcacatagaccaaactaagcggagtccccagttagtaaactgctcact
gtgcttgcctgcctctctgtcacaccaggtttatgtgtgctggggataga
actcagagatttatgcatactggatccgcactctaccaaccaagctacat
cctcggtcctgaattaggtctgctgctgaatctcatcacactctacttac
tacatcaattttcattgtgttaatcaacgtagttgtcatacttttcataa
ctatcaatcaagtaaacaacataagaaaagaaaaatgtggtttgcccatg
gcttcagatattcttgtccatcatatcagagagggtagaatgggagcaaa
gccactcacatcatgggctgacgagatgcagactgagaatgcctccacta
gctagcttccccattttcacctttctgttccatggcttccccttgcaccc
cgtccttagaatagtgccacataatgtgaaagctgggtctagagtggaaa
tctctctcagatatatttagcactgtacttcactaccccatatgcaaggc
tgggaagatggctcacttggtagtacttgaatgtgcaccacagacttgag
tttggatcccagaccatgccatagcagtgtgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_19403642_19404783
seq2: B6Ng01-242O24.g_64_1197 (reverse)

seq1  GTGCACACTGCTATGCCCAGTGGTGCTGAGAATCCAAACTCAGGTTCTTG  50
      ||||||||||||||| |   |||| ||| | ||||||||||| ||   ||
seq2  GTGCACACTGCTATGGC--ATGGT-CTG-GGATCCAAACTCAAGT--CTG  44

seq1  TGTGTGCACATCAAAGTACTACACAGTGAGCAATCTCCCCAGCCCTGCAT  100
      || ||||||||  |||||||||  ||||||| |||| ||||||| |||||
seq2  TG-GTGCACATTCAAGTACTACCAAGTGAGCCATCTTCCCAGCCTTGCAT  93

seq1  ATGGGGTTAGTGAGGTACAGTGCTAAATATATCTGAGAGAGGATTTCCAA  150
      |||||| |||||| |||||||||||||||||||||||||| ||||||| |
seq2  ATGGGG-TAGTGAAGTACAGTGCTAAATATATCTGAGAGA-GATTTCC-A  140

seq1  CTCTAAGACCCAGCTTTCACA-TATGTGGCACTATTCTAAGGACGGGGTG  199
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCT-AGACCCAGCTTTCACATTATGTGGCACTATTCTAAGGACGGGGTG  189

seq1  CAAGGGGAAGCCATGGAACAG-AAGGTGAAAATGGGGAAGCTAGCTAGTG  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAGGGGAAGCCATGGAACAGAAAGGTGAAAATGGGGAAGCTAGCTAGTG  239

seq1  GAGGCATTCTCAGTCTGCATCTCGTCAG-CCATGATGTGAGTGGCTTTGC  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGCATTCTCAGTCTGCATCTCGTCAGCCCATGATGTGAGTGGCTTTGC  289

seq1  TCCCATTCTACCCTCTCTGATATGATGGACAAGAATATCTGAAGCCATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTACCCTCTCTGATATGATGGACAAGAATATCTGAAGCCATGG  339

seq1  GCAAACCACATTTTTCTTTTCTTATGTTGTTTACTTGATTGATAGTTATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCACATTTTTCTTTTCTTATGTTGTTTACTTGATTGATAGTTATG  389

seq1  AAAAGTATGACAACTACGTTGATTAACACAATGAAAATTGATGTAGTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGACAACTACGTTGATTAACACAATGAAAATTGATGTAGTAAG  439

seq1  TAGAGTGTGATGAGATTCAGCAGCAGACCTAATTCAGGACCGAGGATGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTGATGAGATTCAGCAGCAGACCTAATTCAGGACCGAGGATGTA  489

seq1  GCTTGGTTGGTAGAGTGCGGATCCAGTATGCATAAATCTCTGAGTTCTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTGGTAGAGTGCGGATCCAGTATGCATAAATCTCTGAGTTCTAT  539

seq1  CCCCAGCACACATAAACCTGGTGTGACAGAGAGGCAGGCAAGCACAGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACACATAAACCTGGTGTGACAGAGAGGCAGGCAAGCACAGTGA  589

seq1  GCAGTTTACTAACTGGGGACTCCGCTTAGTTTGGTCTATGTGCATAACCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTACTAACTGGGGACTCCGCTTAGTTTGGTCTATGTGCATAACCT  639

seq1  TCTTCTAACTAAGCACTCGGCGTTCTGAGACTTTTGTCTTTGAGTGCTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAACTAAGCACTCGGCGTTCTGAGACTTTTGTCTTTGAGTGCTAT  689

seq1  GGGTGCAGCTCATTCTCTGAATTATGCACCTAGCCACCTGTTAACTGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGCTCATTCTCTGAATTATGCACCTAGCCACCTGTTAACTGAGG  739

seq1  ACCCCAATCTGTGTAGAGGTGAACACCAACCCCCACTGAACAATGCCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATCTGTGTAGAGGTGAACACCAACCCCCACTGAACAATGCCATC  789

seq1  TCCTTTCCTTAACAAGCATCAAACTTACACAGATTCTATTCACTGGCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTAACAAGCATCAAACTTACACAGATTCTATTCACTGGCACT  839

seq1  TTCTTTGTGTCTGGTTACAGGGTAGGAAGCCTCTCTGTCTTAAGCAAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGTCTGGTTACAGGGTAGGAAGCCTCTCTGTCTTAAGCAAGTG  889

seq1  TTTGGATGTGTGCCTAATAGGGCAAACTATAATATCACAGTGGCCTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGTGTGCCTAATAGGGCAAACTATAATATCACAGTGGCCTTTTA  939

seq1  GGAAGGATCCACTGTCTACCGTCTTATACCTATGCGTGATTGAGCAGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATCCACTGTCTACCGTCTTATACCTATGCGTGATTGAGCAGCAT  989

seq1  ATGATTAAAATTAGATGCATTCTAGAAAGGGACACCCATGGTAGAGAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAAAATTAGATGCATTCTAGAAAGGGACACCCATGGTAGAGAGAA  1039

seq1  CATTTTTGTAACTTAATCTGCCAGTCAAAACAGAGAAGCATCTGAATTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTAACTTAATCTGCCAGTCAAAACAGAGAAGCATCTGAATTGC  1089

seq1  ACTTTTTAACAAGCAAACTTCTTTTAAACTCAATAGAAGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAACAAGCAAACTTCTTTTAAACTCAATAGAAGGAATTC  1134