BAC Information

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BAC

Clone NameB6Ng01-243E04
Chromosome2 (Build37)
Map Location 164,858,188 - 164,916,614
singlet/doubletdoublet
Overlap geneNcoa5, Cd40
Upstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Downstream geneCdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243E04.bB6Ng01-243E04.g
ACCGA052692GA052693
length1,1151,140
definitionB6Ng01-243E04.b B6Ng01-243E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,858,188 - 164,859,320)(164,915,473 - 164,916,614)
sequence
gaattcagttctcacagtgcaggaagcttttaaaggcactgccatctgca
ggccgcaggcatggaatgcctggaatagttatttacaataaagtttcaga
gcaaagcattgtttatttagcttggggcactggtagatgaggctccactt
gctgatgttcggaaatgggacttccaagtcaaatcaaatttcccttgctt
ctttgtacattattgctcctgagaagtttgggaccaatggatgatcttat
gtttagttctattctgtgctcaacctgaggtcagccccccaaaatacaga
cttcttgtcatacagcccttggtgctggggtatctggaatggtccaagtt
ggcttttctgaatttcctttcagaaaataaagtaaatctgctctcacact
ttttaaaaactgaatttatgatcagatagctaatgggacatgaaactgct
gatatctagaaaaataccttccatttagtcttgcaatgtggttgttttgc
tagcacattatacaaggagaagcagtctcctatgtttcggtagagactaa
tgcatgtctaggggctcaaaaaatatatgaaagaggaaagacgagctaaa
tggaagagacaaaccaaaaggaaggcaggcatgcacgctaaccatcagtc
aagtggtctccaatccccacaaggcaaaactagagccttgttccaaaatg
ttgatacaaagttgctttttcacactcagacagatacaagtttaagtgtt
ctgtggtcaaaagccacatcagggtttgcagaagcatcctttcatgaact
ttcaaggtggctaccacaccacaatactgtaagaaagcgaggaaacacac
ccagtacatctgagggatggttcttgcagctcctgagattagcgcttcta
aaggacaaccttttacaatgagaaagctcagaatatttatcatcaccctg
aagatcccgggacaccccgggacattgcaatgggagctggaatgccgcag
gggaaaattccatatacagtgaagacatacatgacataccccgtactcca
gggcagcgtcccaagctgagcgcacacttcagaagacagaccacagtgtt
tattttaatagacag
gccagtctgagttcaaagagaacccctgtgttgaaaaacagagagagaga
gagagagagagagagagagagagagagagagagagagaacaagatggatg
aaacttccttaataaagagtcctcctcagaagggtgaatgggagacaggg
agacaggacaggacagctgtgggggtgtataatggtgtctcagacagtga
gtgagcaggaggatatgaggaagttgcctgaagccatggtttatgtcact
gctttctctggctttcacatagcccggaatcacccaaggcattacatggt
tgctgagcagcatgtgactgcatcacagagcctccctggcctagggaagg
tgcccagagtcactggattggtggacaaggactggcaggaaagggctggt
caacctgactcccaggttaggggcgtaaaagccatgtccccctgctgggt
gggaatagccttggagcagcacgtgcttgctcttgggtacctgaatctga
gagtgaccacacacctgatgctgaacctctatatcttagggtaagccctc
tgaccttctggtagccacaatggaggtgttcaggccaaagggctacggcc
taattggaggagattctgcatctggagttgttccaagctcatgccaaagc
taaccctggcaaacatctgcccgcggactgtgaacttgaagcaagcattg
ctatggcctccagatcctggattcttcagatctatacttggtactgttga
acatatgaggccccttggtgcatgcttcgaatctcagcattcaggaggct
gaggcaggaggatggcaagttccaggcaagcctagatttcataccgagac
ctagaccccccccaagccaaccaccaactgtgagcaagttcaagcctgag
aggtctcagagtaccttgaatgtggggtgctgaaaactgaacctttaaat
agtgaggcgcctgtggggtctaaatgtcactgtacagcagtgtagatgtg
cacctccatagcccagggggtgggggttcttacttgggtgggaactgaag
acacacggccaggacaaacaagggaccattgacctgctcagctgtccctt
ccacctattcttcttcgttcaatgcacctcacccgtaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164858188_164859320
seq2: B6Ng01-243E04.b_44_1158

seq1  GAATTCAGTTCTCACAGTGCAGGAAGCTTTTAAAGGCACTGCCATCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCACAGTGCAGGAAGCTTTTAAAGGCACTGCCATCTGCA  50

seq1  GGCCGCAGGCATGGAATGCCTGGAATAGTTATTTACAATAAAGTTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGGCATGGAATGCCTGGAATAGTTATTTACAATAAAGTTTCAGA  100

seq1  GCAAAGCATTGTTTATTTAGCTTGGGGCACTGGTAGATGAGGCTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCATTGTTTATTTAGCTTGGGGCACTGGTAGATGAGGCTCCACTT  150

seq1  GCTGATGTTCGGAAATGGGACTTCCAAGTCAAATCAAATTTCCCTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTCGGAAATGGGACTTCCAAGTCAAATCAAATTTCCCTTGCTT  200

seq1  CTTTGTACATTATTGCTCCTGAGAAGTTTGGGACCAATGGATGATCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACATTATTGCTCCTGAGAAGTTTGGGACCAATGGATGATCTTAT  250

seq1  GTTTAGTTCTATTCTGTGCTCAACCTGAGGTCAGCCCCCCAAAATACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTCTATTCTGTGCTCAACCTGAGGTCAGCCCCCCAAAATACAGA  300

seq1  CTTCTTGTCATACAGCCCTTGGTGCTGGGGTATCTGGAATGGTCCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCATACAGCCCTTGGTGCTGGGGTATCTGGAATGGTCCAAGTT  350

seq1  GGCTTTTCTGAATTTCCTTTCAGAAAATAAAGTAAATCTGCTCTCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTGAATTTCCTTTCAGAAAATAAAGTAAATCTGCTCTCACACT  400

seq1  TTTTAAAAACTGAATTTATGATCAGATAGCTAATGGGACATGAAACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACTGAATTTATGATCAGATAGCTAATGGGACATGAAACTGCT  450

seq1  GATATCTAGAAAAATACCTTCCATTTAGTCTTGCAATGTGGTTGTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAGAAAAATACCTTCCATTTAGTCTTGCAATGTGGTTGTTTTGC  500

seq1  TAGCACATTATACAAGGAGAAGCAGTCTCCTATGTTTCGGTAGAGACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTATACAAGGAGAAGCAGTCTCCTATGTTTCGGTAGAGACTAA  550

seq1  TGCATGTCTAGGGGCTCAAAAAATATATGAAAGAGGAAAGACGAGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCTAGGGGCTCAAAAAATATATGAAAGAGGAAAGACGAGCTAAA  600

seq1  TGGAAGAGACAAACCAAAAGGAAGGCAGGCATGCACGCTAACCATCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGACAAACCAAAAGGAAGGCAGGCATGCACGCTAACCATCAGTC  650

seq1  AAGTGGTCTCCAATCCCCACAAGGCAAAACTAGAGCCTTGTTCCAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTCTCCAATCCCCACAAGGCAAAACTAGAGCCTTGTTCCAAAATG  700

seq1  TTGATACAAAGTTGCTTTTTCACACTCAGACAGATACAAGTTTAAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAAAGTTGCTTTTTCACACTCAGACAGATACAAGTTTAAGTGTT  750

seq1  CTGTGGTCAAAAGCCACATCAGGGTTTGCAGAAGCATCCTTTCATGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCAAAAGCCACATCAGGGTTTGCAGAAGCATCCTTTCATGAACT  800

seq1  TTCAAGGTGGCTACCACACCACAATACTGTAAGAAAGCGAGGAAACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGGCTACCACACCACAATACTGTAAGAAAGCGAGGAAACACAC  850

seq1  CCAGTACATCTGAGGGATGGTTCTTGCAGCTCCTGAGATTAGCGCTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACATCTGAGGGATGGTTCTTGCAGCTCCTGAGATTAGCGCTTCTA  900

seq1  AAGGACAACCTTTTACAATGAGAAAGCTCAGAATATTTATCATCACCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACCTTTTACAATGAGAAAGCTCAGAATATTTATCATCACCCTG  950

seq1  AAGATCCCGGGACACCCCGGGACATTGCAATGGGAGCTGGAATGCCGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCGGGACACCCCGGGACATTGCAATGGGAGCTGGAATGCCGCAG  1000

seq1  GGGGAAAAATTCCATATACAGTGAAAGACATAACATGACAATTAACCCCG  1050
      |||  |||||||||||||||||| ||||||| ||||||||    ||||||
seq2  GGG--AAAATTCCATATACAGTG-AAGACAT-ACATGACA---TACCCCG  1043

seq1  TACTCCAAGGGCAGCGGTTCCCAAAGCCTGGAGCGCACAACTTCAGGAGG  1100
      |||||| |||||||||  |||| ||||   |||||||| ||||||| || 
seq2  TACTCC-AGGGCAGCG--TCCC-AAGC--TGAGCGCAC-ACTTCAGAAG-  1085

seq1  AACAAGGACACAAGTGTTTATTTTAATAGACAG  1133
       |||  |||   |||||||||||||||||||||
seq2  -ACA--GACCACAGTGTTTATTTTAATAGACAG  1115

seq1: chr2_164915473_164916614
seq2: B6Ng01-243E04.g_76_1215 (reverse)

seq1  GTTTAGGGGTGAGGTGCATGGGAGGGGGAGGAGAGATTAGGTGGAAGGGG  50
      ||||| ||||||||||||| | | |  ||    ||| ||||||||| |||
seq2  GTTTACGGGTGAGGTGCATTGAACGAAGA----AGAATAGGTGGAA-GGG  45

seq1  ACAGGCTGAGCAGGTCATTGGTCCCTTTGTTTGTTCCTGGCCCGTTGTGT  100
      ||| ||||||||||||| ||||||| ||||||| ||||||||   |||||
seq2  ACA-GCTGAGCAGGTCAATGGTCCC-TTGTTTG-TCCTGGCC--GTGTGT  90

seq1  C-TCAGTTCCCA-CCAAGT-AGA--CCCCACCCC--TGGCTAT-GAGGTG  142
      | |||||||||| |||||| |||  |||||||||   |||||| ||||||
seq2  CTTCAGTTCCCACCCAAGTAAGAACCCCCACCCCCTGGGCTATGGAGGTG  140

seq1  CACATCTACACTGCTGTAACAGTGACATTTAGA-CCCACAGGCGCCTCAC  191
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CACATCTACACTGCTGT-ACAGTGACATTTAGACCCCACAGGCGCCTCAC  189

seq1  TATTTAAAGGTTCAGTTTTCAGCACCCCACATTCAAGGTACTCTGAGACC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGGTTCAGTTTTCAGCACCCCACATTCAAGGTACTCTGAGACC  239

seq1  TCTCAGGCTTGAACTTGCTCACAGTTGGTGGTTGGCTTGGGGGGGGTCTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTTGAACTTGCTCACAGTTGGTGGTTGGCTTGGGGGGGGTCTA  289

seq1  GGTCTCGGTATGAAATCTAGGCTTGCCTGGAACTTGCCATCCTCCTGCCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGGTATGAAATCTAGGCTTGCCTGGAACTTGCCATCCTCCTGCCT  339

seq1  CAGCCTCCTGAATGCTGAGATTCGAAGCATGCACCAAGGGGCCTCATATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTGAATGCTGAGATTCGAAGCATGCACCAAGGGGCCTCATATG  389

seq1  TTCAACAGTACCAAGTATAGATCTGAAGAATCCAGGATCTGGAGGCCATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGTACCAAGTATAGATCTGAAGAATCCAGGATCTGGAGGCCATA  439

seq1  GCAATGCTTGCTTCAAGTTCACAGTCCGCGGGCAGATGTTTGCCAGGGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTTGCTTCAAGTTCACAGTCCGCGGGCAGATGTTTGCCAGGGTT  489

seq1  AGCTTTGGCATGAGCTTGGAACAACTCCAGATGCAGAATCTCCTCCAATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCATGAGCTTGGAACAACTCCAGATGCAGAATCTCCTCCAATT  539

seq1  AGGCCGTAGCCCTTTGGCCTGAACACCTCCATTGTGGCTACCAGAAGGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTAGCCCTTTGGCCTGAACACCTCCATTGTGGCTACCAGAAGGTC  589

seq1  AGAGGGCTTACCCTAAGATATAGAGGTTCAGCATCAGGTGTGTGGTCACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTACCCTAAGATATAGAGGTTCAGCATCAGGTGTGTGGTCACT  639

seq1  CTCAGATTCAGGTACCCAAGAGCAAGCACGTGCTGCTCCAAGGCTATTCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCAGGTACCCAAGAGCAAGCACGTGCTGCTCCAAGGCTATTCC  689

seq1  CACCCAGCAGGGGGACATGGCTTTTACGCCCCTAACCTGGGAGTCAGGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCAGGGGGACATGGCTTTTACGCCCCTAACCTGGGAGTCAGGTT  739

seq1  GACCAGCCCTTTCCTGCCAGTCCTTGTCCACCAATCCAGTGACTCTGGGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCCTTTCCTGCCAGTCCTTGTCCACCAATCCAGTGACTCTGGGC  789

seq1  ACCTTCCCTAGGCCAGGGAGGCTCTGTGATGCAGTCACATGCTGCTCAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTAGGCCAGGGAGGCTCTGTGATGCAGTCACATGCTGCTCAGC  839

seq1  AACCATGTAATGCCTTGGGTGATTCCGGGCTATGTGAAAGCCAGAGAAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTAATGCCTTGGGTGATTCCGGGCTATGTGAAAGCCAGAGAAAG  889

seq1  CAGTGACATAAACCATGGCTTCAGGCAACTTCCTCATATCCTCCTGCTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATAAACCATGGCTTCAGGCAACTTCCTCATATCCTCCTGCTCA  939

seq1  CTCACTGTCTGAGACACCATTATACACCCCCACAGCTGTCCTGTCCTGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTCTGAGACACCATTATACACCCCCACAGCTGTCCTGTCCTGTC  989

seq1  TCCCTGTCTCCCATTCACCCTTCTGAGGAGGACTCTTTATTAAGGAAGTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTCCCATTCACCCTTCTGAGGAGGACTCTTTATTAAGGAAGTT  1039

seq1  TCATCCATCTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1089

seq1  CTCTCTCTCTCTGTTTTTCAACACAGGGGTTCTCTTTGAACTCAGACTGG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTGTTTTTCAACACAGGGGTTCTCTTTGAACTCAGACTGG  1139

seq1  C  1142
      |
seq2  C  1140