BAC Information

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BAC

Clone NameB6Ng01-243O18
Chromosome2 (Build37)
Map Location 155,338,715 - 155,479,949
singlet/doubletdoublet
Overlap geneGgtl3, Acss2, Gss, Myh7b, Trpc4ap
Upstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938
Downstream geneEdem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243O18.bB6Ng01-243O18.g
ACCGA053182GA053183
length1,0991,060
definitionB6Ng01-243O18.b B6Ng01-243O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,338,715 - 155,339,814)(155,478,900 - 155,479,949)
sequence
gaattccatcccctatcagcacttcatcttgccagcttctccctttcatc
tattcattcaataatcatttactgagtgcccaacactgtgctgaattctg
gagaaagaatagtggatgaaaaagccacactccctgcttttcgaggcctc
atagacaacagtaagcccaaataaataaccacaggctttttaataaagca
gtgacctttaacgggggccagaagaagacagatcaaaggtcctgctttgt
tatctggatatgctttatagaggtggaggagaaaaggaaagcccagtaca
gggtaggcacacccactaaactgtagtaagtcacggctgtactgctctta
atctctgaatagaaaacccaaattgaccaggtggctggtgtcaatagatg
accagaaggttccaccaggacatcctttcccacatccactcttgtaccgc
caaggctaccctgcgccccccccccaagaaaattagttttgacaggcagc
tctgacatttgaggtcccaaagtctacacagcccattcttaatcccatca
caggtaaagtgagatccagtcaggctggtgggttctggtggtcaggaagc
agaggagaggatttcagtcgccaggctgggagtgacaatggaagagccag
gctagaaagggccggagcagcatcctccggtatagacagggatatagctc
aagtgcaggcaccaccaggaggaagtcagggagcagaagaatgctctggt
gccaggaagtgacgttgaaggaaagagggcagagggatgcttggataaag
aatggtggggagcacagagctggaccacatgggcaggagagatagcaata
ggggaggaataccaacggatctcttggttcccagctccctctctcaagcc
cagctttctttcccaaacttccatctccttcagtttcagcagagggtgga
gaacaacagatctttgttgctgacagaaagctcctatgaccttgactaac
atctggtctagatcccattctctggatgggttaggtaaattccacagaac
agtaggcactgtagtccccagactttggaagtcatgcgtccattccttg
gaattcactctgtagatcaggctggccttgaattcatagagatctgccac
cctctgtctccagagtgctgagatttgtaccaccatgcctggttacttat
tattttttatattttatgtatatgggtgttttcctgcatgtgtgtctgtg
taccacgtgagtgtttggtgccaaggaggccagaagagggcatcctgtcc
cctggaactggagtcacagacagttgaaggccactatgtggtgctgggaa
ttgaaccccagtcccctgaaaaagcaaactctctaaacctctgagccagc
tctagctgcggtgacagcagtctttcttagcgagatgtgatagcgcatgt
ctgttttcctagcacttgggaggtagaagccagagggtcaggaattcaag
gccagtctaggcctcagagaccctgtctcaatggcagaaaaccctaacaa
aaggaaaaagggaccatccccgtcgctcgttgtacagggttgcagtgctg
ttgtgtacattccttctctctctctctctctgcagctgctcttctcagca
tccctggctttgtggaacggctttgcaaactggcaactaggaaagtgtca
gagtcaacgggcacagccagcttccttcaagaactggaggagtggtacac
atggctcgacaatgcgttggtgctagatgccctgatgcgagtggccaatg
aggagtctgaacacaatcaaggtactttctatagggcccctgagtggtga
gttttttctgggccccttggagatgatgtttgatctcctttttgtggaaa
attgagagttacttacagtagaattttcccttagtgcagtccctacactg
ggatgctattaaaacgttaataagttctccttgtttcataaaaagaagaa
ataaagggagtctgaatttgtataataaagagattgaataaggatgcaaa
agctactcaaaattaaccctatagcacgtggccttccctggtgatttctg
ccaccacatttacagggaaattcccactgatgctttgtaagccttctgta
gagccaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155338715_155339814
seq2: B6Ng01-243O18.b_45_1143

seq1  GAATTCCATCCCCTATCAGCACTTCATCTTGCCAGCTTCTCCCTTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCTATCAGCACTTCATCTTGCCAGCTTCTCCCTTTCATC  50

seq1  TATTCATTCAATAATCATTTACTGAGTGCCCAACACTGTGCTGAATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCAATAATCATTTACTGAGTGCCCAACACTGTGCTGAATTCTG  100

seq1  GAGAAAGAATAGTGGATGAAAAAGCCACACTCCCTGCTTTTCGAGGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAATAGTGGATGAAAAAGCCACACTCCCTGCTTTTCGAGGCCTC  150

seq1  ATAGACAACAGTAAGCCCAAATAAATAACCACAGGCTTTTTAATAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACAGTAAGCCCAAATAAATAACCACAGGCTTTTTAATAAAGCA  200

seq1  GTGACCTTTAACGGGGGCCAGAAGAAGACAGATCAAAGGTCCTGCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTTAACGGGGGCCAGAAGAAGACAGATCAAAGGTCCTGCTTTGT  250

seq1  TATCTGGATATGCTTTATAGAGGTGGAGGAGAAAAGGAAAGCCCAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGATATGCTTTATAGAGGTGGAGGAGAAAAGGAAAGCCCAGTACA  300

seq1  GGGTAGGCACACCCACTAAACTGTAGTAAGTCACGGCTGTACTGCTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGCACACCCACTAAACTGTAGTAAGTCACGGCTGTACTGCTCTTA  350

seq1  ATCTCTGAATAGAAAACCCAAATTGACCAGGTGGCTGGTGTCAATAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATAGAAAACCCAAATTGACCAGGTGGCTGGTGTCAATAGATG  400

seq1  ACCAGAAGGTTCCACCAGGACATCCTTTCCCACATCCACTCTTGTACCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGGTTCCACCAGGACATCCTTTCCCACATCCACTCTTGTACCGC  450

seq1  CAAGGCTACCCTGCGCCCCCCCCCCAAGAAAATTAGTTTTGACAGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACCCTGCGCCCCCCCCCCAAGAAAATTAGTTTTGACAGGCAGC  500

seq1  TCTGACATTTGAGGTCCCAAAGTCTACACAGCCCATTCTTAATCCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTTGAGGTCCCAAAGTCTACACAGCCCATTCTTAATCCCATCA  550

seq1  CAGGTAAAGTGAGATCCAGTCAGGCTGGTGGGTTCTGGTGGTCAGGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGTGAGATCCAGTCAGGCTGGTGGGTTCTGGTGGTCAGGAAGC  600

seq1  AGAGGAGAGGATTTCAGTCGCCAGGCTGGGAGTGACAATGGAAGAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGATTTCAGTCGCCAGGCTGGGAGTGACAATGGAAGAGCCAG  650

seq1  GCTAGAAAGGGCCGGAGCAGCATCCTCCGGTATAGACAGGGATATAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGGGCCGGAGCAGCATCCTCCGGTATAGACAGGGATATAGCTC  700

seq1  AAGTGCAGGCACCACCAGGAGGAAGTCAGGGAGCAGAAGAATGCTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGGCACCACCAGGAGGAAGTCAGGGAGCAGAAGAATGCTCTGGT  750

seq1  GCCAGGAAGTGACGTTGAAGGAAAGAGGGCAGAGGGATGC-TGGATAAAG  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCAGGAAGTGACGTTGAAGGAAAGAGGGCAGAGGGATGCTTGGATAAAG  800

seq1  AATGGTGGGGAGCACAGAGCTGGACCACATGGGCAGGAGAGATAGCAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGGGAGCACAGAGCTGGACCACATGGGCAGGAGAGATAGCAATA  850

seq1  GGGGAGGAATACCAACGGATCTCTTGGTCCCCAGCTCCCTCTCTCAAGCC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGGAGGAATACCAACGGATCTCTTGGTTCCCAGCTCCCTCTCTCAAGCC  900

seq1  CAGC-TTCCTTCCCAAAC-TCCATCTCCTTCAGTTTCAGCAGAGGGTGGA  947
      |||| ||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCTTTCTTTCCCAAACTTCCATCTCCTTCAGTTTCAGCAGAGGGTGGA  950

seq1  GAAC-ACAGATC-TTGTTGCTGACCAGAAGCTCCTACCGACC-TGACTAA  994
      |||| ||||||| |||||||||||   |||||||||  |||| |||||||
seq2  GAACAACAGATCTTTGTTGCTGACAGAAAGCTCCTA-TGACCTTGACTAA  999

seq1  CATCCGGGCCAGATCCCCATCTCTGGAAGGGGTAGGGTAA-TCCACAGAA  1043
      |||| || | |||||||  |||||||| ||| ||||  || |||||||||
seq2  CATCTGGTCTAGATCCCATTCTCTGGATGGGTTAGGTAAATTCCACAGAA  1049

seq1  CAGCAAAGGCACTGTAGTCCCCAAGGACTTTGAGAGGTCATGCCGTCCAT  1093
      |||   |||||||||||||||||  ||||||| || |||||| |||||||
seq2  CAG--TAGGCACTGTAGTCCCCA--GACTTTG-GAAGTCATG-CGTCCAT  1093

seq1  CCCCTTG  1100
        |||||
seq2  -TCCTTG  1099

seq1: chr2_155478900_155479949
seq2: B6Ng01-243O18.g_65_1124 (reverse)

seq1  TGTTT-GCTCTACAGAAGGCTTACAAAGCATCAGTGGGA--TTTCCTGTA  47
      ||||| |||||||||||||||||||||||||||||||||  || ||||||
seq2  TGTTTGGCTCTACAGAAGGCTTACAAAGCATCAGTGGGAATTTCCCTGTA  50

seq1  AATGT-GTGGCAGAAATCACCAGGGAA-GCCACGTGCTATA-GGTTTATT  94
      ||||| ||||||||||||||||||||| ||||||||||||| |||| |||
seq2  AATGTGGTGGCAGAAATCACCAGGGAAGGCCACGTGCTATAGGGTTAATT  100

seq1  TTGAGTAGCTTTTGCATCCTTATTCAATCTCTTTATTATAC-AATTCAGA  143
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGAGTAGCTTTTGCATCCTTATTCAATCTCTTTATTATACAAATTCAGA  150

seq1  CT-CCTTTATTTCTTCTTTTTATGAAACAAGGAGAACTTATTAACGTTTT  192
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTATTTCTTCTTTTTATGAAACAAGGAGAACTTATTAACGTTTT  200

seq1  AATAGCATCCCAGTGTA-GGACTGCACTAA-GGAAAATTCTACTGTAAGT  240
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  AATAGCATCCCAGTGTAGGGACTGCACTAAGGGAAAATTCTACTGTAAGT  250

seq1  AACTCTCAATTTTCCACAAAAAGGAGATCAAACATCATCTCCAAGGGGCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAATTTTCCACAAAAAGGAGATCAAACATCATCTCCAAGGGGCC  300

seq1  CAGAAAAAACTCACCACTCAGGGGCCCTATAGAAAGTACCTTGATTGTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAACTCACCACTCAGGGGCCCTATAGAAAGTACCTTGATTGTGT  350

seq1  TCAGACTCCTCATTGGCCACTCGCATCAGGGCATCTAGCACCAACGCATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCCTCATTGGCCACTCGCATCAGGGCATCTAGCACCAACGCATT  400

seq1  GTCGAGCCATGTGTACCACTCCTCCAGTTCTTGAAGGAAGCTGGCTGTGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGCCATGTGTACCACTCCTCCAGTTCTTGAAGGAAGCTGGCTGTGC  450

seq1  CCGTTGACTCTGACACTTTCCTAGTTGCCAGTTTGCAAAGCCGTTCCACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGACTCTGACACTTTCCTAGTTGCCAGTTTGCAAAGCCGTTCCACA  500

seq1  AAGCCAGGGATGCTGAGAAGAGCAGCTGCAGAGAGAGAGAGAGAGAAGGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGATGCTGAGAAGAGCAGCTGCAGAGAGAGAGAGAGAGAAGGA  550

seq1  ATGTACACAACAGCACTGCAACCCTGTACAACGAGCGACGGGGATGGTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAACAGCACTGCAACCCTGTACAACGAGCGACGGGGATGGTCC  600

seq1  CTTTTTCCTTTTGTTAGGGTTTTCTGCCATTGAGACAGGGTCTCTGAGGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTTTGTTAGGGTTTTCTGCCATTGAGACAGGGTCTCTGAGGC  650

seq1  CTAGACTGGCCTTGAATTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGGCCTTGAATTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCT  700

seq1  AGGAAAACAGACATGCGCTATCACATCTCGCTAAGAAAGACTGCTGTCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGACATGCGCTATCACATCTCGCTAAGAAAGACTGCTGTCAC  750

seq1  CGCAGCTAGAGCTGGCTCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTAGAGCTGGCTCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGAC  800

seq1  TGGGGTTCAATTCCCAGCACCACATAGTGGCCTTCAACTGTCTGTGACTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCAATTCCCAGCACCACATAGTGGCCTTCAACTGTCTGTGACTC  850

seq1  CAGTTCCAGGGGACAGGATGCCCTCTTCTGGCCTCCTTGGCACCAAACAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGGGGACAGGATGCCCTCTTCTGGCCTCCTTGGCACCAAACAC  900

seq1  TCACGTGGTACACAGACACACATGCAGGAAAACACCCATATACATAAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGGTACACAGACACACATGCAGGAAAACACCCATATACATAAAAT  950

seq1  ATAAAAAATAATAAGTAACCAGGCATGGTGGTACAAATCTCAGCACTCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAATAAGTAACCAGGCATGGTGGTACAAATCTCAGCACTCTG  1000

seq1  GAGACAGAGGGTGGCAGATCTCTATGAATTCAAGGCCAGCCTGATCTACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGGTGGCAGATCTCTATGAATTCAAGGCCAGCCTGATCTACA  1050

seq1  GAGTGAATTC  1050
      ||||||||||
seq2  GAGTGAATTC  1060