BAC Information

Click to search

BAC

Clone NameB6Ng01-243P21
Chromosome4 (Build37)2 (Build37)
Map Location 35,866,516 - 35,867,031112,681,450 - 112,682,183
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P21.bB6Ng01-243P21.g
ACCGA053235GA053236
length1,152737
definitionB6Ng01-243P21.b B6Ng01-243P21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,866,516 - 35,867,031)(112,681,450 - 112,682,183)
sequence
gaattcttacctgaggaataccgaatggcggagaaacacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgaaaatcaaaacaaccctgagat
tccacctcacaccagctagaatgcctaagatcaaaatttcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccactgtcggtg
ggattacaagcttgtacaaccactctggaaatctgtttggcggttcctca
gaaaattggacatagtactacaggaggatcaagcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaataatccagat
gcccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatgaatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcaaatgatatgtactcactgataagtggatattagcccagaaa
cagaatacccaagatatatgatacaatttgcaaaacacatgaaactcaag
aagaatgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacatccatggaaggagttacagagacaaagtttggagctgagacaa
aagggtggaccatctagagactgccatatccagggatccatcccataatc
agcctccaaactctgaatccattgcatacactagcaagattttgctgaaa
ggaccctgatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacaggggcccca
tggaggagctagagaaagtactcaaggagctaaagggatctgcaccctat
aggtggaacacattatgactacagtaccccggagctcttgactctagctg
catatgtatctaagatggcctagtctggcatcactggcaagagaggtcca
tgggacatgcactttaatgcctcagtacagggactcagactcactgactg
gg

gaattctattgaagtttacagtttatgaactaggaaaacatatgacttgc
aaaacagatctgaagggatcacattagttatccattgggagcattaatag
cctctcagtgaatggaacacattggttcccatgtttctattttgagtaaa
taagtgtcttaaagtgacaactccttctgttcatcctttaaatctttaat
cttccatcttatctatcacagacaacataaagactgcagagaaatagttt
tggaatacatgaataatcttttagagctcaataaggaaaaactgatgttt
cctcttaaaagatgaccagtagatagaaatcatccaatccataaacatat
ttttctctgtataaaatacaagcatgctgtgcttatttgctagtctaata
gagtagtctgcatgggcttaccaactgggggaggatgaggggagtggaaa
agaattaggaacataaccataaaccccaggcccaaggctcaaagcaacag
ctcagcctcggaagccacacctacctggtagcaggtgccaagttccttcc
cattagctgagaaggacaacatgcccattgccagatctagaaggcagcca
aatctccaggtctacattgctccgacttgatctttgggaactggctacaa
tatccccaccccagaccatgtagcagttgctgcgttttcacactgaaaac
caaagagagaggagttgtagaatatggtttccggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35866516_35867031
seq2: B6Ng01-243P21.b_841_1199

seq1  CATAATCAGCCTCCAAATGCTGACACTATTGAACACACTAGCAAGATTTT  50
      |||||||||||||||||  ||||  | |||| | ||||||||||||||||
seq2  CATAATCAGCCTCCAAACTCTGAATCCATTGCATACACTAGCAAGATTTT  50

seq1  GCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCAGGGGCCT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCT  100

seq1  AGCAAACACAGAAGTGGAAGCTCACAGTCAGCTATTGAATGGATCACAGG  150
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  AGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGG  150

seq1  GTCCCCGATGGAGGAGCTAGAGAAAGCACCCAAGGAACTAAAGGGAACTG  200
      | |||| ||||||||||||||||||| || |||||| ||||||||| |||
seq2  GGCCCC-ATGGAGGAGCTAGAGAAAGTACTCAAGGAGCTAAAGGGATCTG  199

seq1  CAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTC  250
      | |||||||||||||||| |||||||| ||||  ||||||||||||||||
seq2  C-ACCCTATAGGTGGAAC-ACATTATG-ACTA--CAGTACCCCGGAGCTC  244

seq1  TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCAATG  300
      |||||||||||||||||||||||  |||||||||||||| | ||||| ||
seq2  TTGACTCTAGCTGCATATGTATC-TAAGATGGCCTAGTCTGGCATCACTG  293

seq1  GAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGT  350
      | |||||||| |||| |||| |||  |||||| ||||| |||||||||| 
seq2  GCAAGAGAGGTCCATGGGACATGC--ACTTTA-ATGCCTCAGTACAGGG-  339

seq1  AACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGG  400
       ||  |||   ||   |  |||                            
seq2  -AC-TCAGACTCACTGACTGGG----------------------------  359

seq1  TGGGTATGGGGGACTTTTGGGATAGTATTGGAAATGTAAATGAGGAAAAT  450
                                                        
seq2  --------------------------------------------------  359

seq1  ACCTAATTTAAAAAAAAAAAAAAAAAAGAAAGACTCAGGACTGCCACTTC  500
                                                        
seq2  --------------------------------------------------  359

seq1  AGACTCACTGACTGGG  516
                      
seq2  ----------------  359


seq1: chr2_112681450_112682183
seq2: B6Ng01-243P21.g_67_803

seq1  GAATTCTATTGAAGTTTACAGTTTATGAACTAGGAAAACATATGACTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGAAGTTTACAGTTTATGAACTAGGAAAACATATGACTTGC  50

seq1  AAAACAGATCTGAAGGGATCACATTAGTTATCCATTGGGAGCATTAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATCTGAAGGGATCACATTAGTTATCCATTGGGAGCATTAATAG  100

seq1  CCTCTCAGTGAATGGAACACATTGGTTCCCATGTTTCTATTTTGAGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTGAATGGAACACATTGGTTCCCATGTTTCTATTTTGAGTAAA  150

seq1  TAAGTGTCTTAAAGTGACAACTCCTTCTGTTCATCCTTTAAATCTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTTAAAGTGACAACTCCTTCTGTTCATCCTTTAAATCTTTAAT  200

seq1  CTTCCATCTTATCTATCACAGACAACATAAAGACTGCAGAGAAATAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTTATCTATCACAGACAACATAAAGACTGCAGAGAAATAGTTT  250

seq1  TGGAATACATGAATAATCTTTTAGAGCTCAATAAGGAAAAACTGATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACATGAATAATCTTTTAGAGCTCAATAAGGAAAAACTGATGTTT  300

seq1  CCTCTTAAAAGATGACCAGTAGATAGAAATCATCCAATCCATAAACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAAGATGACCAGTAGATAGAAATCATCCAATCCATAAACATAT  350

seq1  TTTTCTCTGTATAAAATACAAGCATGCTGTGCTTATTTGCTAGTCTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTATAAAATACAAGCATGCTGTGCTTATTTGCTAGTCTAATA  400

seq1  GAGTAGTCTGCATGGGCTTACCAACTGGGGGAGGATGAGGGGAGTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCTGCATGGGCTTACCAACTGGGGGAGGATGAGGGGAGTGGAAA  450

seq1  AGAATTAGGAACATAACCATAAACCCCAGGCCCAAGGCTCAAAGCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGGAACATAACCATAAACCCCAGGCCCAAGGCTCAAAGCAACAG  500

seq1  CTCAGCCTCGGAAGCCACACCTACCTGGTAGCAGGTGCCAAGTTCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCGGAAGCCACACCTACCTGGTAGCAGGTGCCAAGTTCCTTCC  550

seq1  CATTAGCTGAGAAGGACAACATGCCCATTGCCAGATCTAGAAGGCAGCC-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTAGCTGAGAAGGACAACATGCCCATTGCCAGATCTAGAAGGCAGCCA  600

seq1  AATCTCCAGGTCTACATTGCTCCGACTTGATCTTTGGGAACTGGCTACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAGGTCTACATTGCTCCGACTTGATCTTTGGGAACTGGCTACAA  650

seq1  TATCCCCACCCCAGACCATGTAGCAGTTGCTGCG-TTTCACACTGAAAAC  698
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATCCCCACCCCAGACCATGTAGCAGTTGCTGCGTTTTCACACTGAAAAC  700

seq1  CAAAGAGAGAGGAGTTGTAGAATATGGTTT-CGGTGG  734
      |||||||||||||||||||||||||||||| ||||||
seq2  CAAAGAGAGAGGAGTTGTAGAATATGGTTTCCGGTGG  737


| Home | SequenceCutter | Blast | Download |