BAC Information

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BAC

Clone NameB6Ng01-244G07
Chromosome2 (Build37)
Map Location 77,153,613 - 77,251,796
singlet/doubletdoublet
Overlap geneLOC667906, Zfp533
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G07.bB6Ng01-244G07.g
ACCGA053539GA053540
length1,0851,100
definitionB6Ng01-244G07.b B6Ng01-244G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,153,613 - 77,154,712)(77,250,693 - 77,251,796)
sequence
gaattcttagttctttccccctgattccagatgagtttttctctttggat
gttaaaaggctattgcagggctggcgagatggctcagtggttaagggtgc
tgactgttcttctgaaggtcctgagttcaattcccagcaaccacatggtg
gctcacaaccatctgtaatgagatctgatgccctcatctggagtctctga
agacagctacagtgtacttacatataatgaataaataaatctaaaaaaaa
aaaaaaaaaaaaaaaaaggctattgcagtttctcacaaggagataatatc
tcatgtaggcactgcagttcagacctaaacttcttgcctgaagtactata
gagaaggaagaattccttcaccctcctggcacacattctgtgccaccctc
aaaggcaaaataacatgcacttcttctgagctctcctagattctaagttc
tatattttatattccacattctatagtctacattccacattctgtgttcc
acattctacattccaattccatattctattttcttctaaatcatatatat
attctatattctatgttctatattctctattcttctctattctatattgt
attatatatagtctatgttccatattccatattctaggagatagaaatag
aatcccccactaggtgccaaatacatttgagaaattgctgcagtctagag
cctttcttggagacaaccaatgtatttgctctcctgaaggctcagagaag
ccccgctgtgtggaaatgcacttactggcattttcctaaccaagaagcat
ggaaagtgtgctcccctgcacatgtgttcgtgtttgtggcagtgtgttcc
gatggcaccaaactgggaaagtcattttgaatgacctctctgctgtgtgg
tttaactgttgtctccatgaaatctcttgtacaggtagctgactagtagg
actgtctcgcagacgtcctcgatgacagtctttcaatctgcactgtctct
cttagctcctttctgtctacactgctggaattaaaagtgactcatatgag
atttataagctatcttatatactaaccttgaagat
gaattcacgggagagaaggtcttgatccacggtggtgcctgtgtggagat
cagaggagagcttgggggagttagttctcttcttccatcttgagggtccg
ggggatcaaattctgtctgtgagacctggctgcaggcacatgtatccaca
gagccatgtcagggtaggcaggaggtgcctctacctgctgagccatctcc
aacaggtccagagattagaggttagaatgaggtgcttaattccagctaca
gggtaccttagaacagcaaagtggagcctcttgaaaagacagtgtctcgg
ggctggagagagggttagaagcttgcaggggactcaactttggttcccag
cactcagggcaagcagcttacagcagctccaggggatctgacacttgaac
attggaggcatctactctctctctcacacacacacacaattaaaatgaaa
aaatatatactttaagagcttatgtcaaagatgaccttctgtaagaaaaa
aaacaaacaaaacaaaacaaacaaacaaaaaacaacaacaaaaaaaaaag
aaagaaagaaagctgaaagcctaaaataagaacaaatgatgtctgaggaa
ttctgggaagtttcagacttggaacgtgaggttacttttgtgacaaaaat
ccatagagttagtatctccccattttctggtatgtgtttgtatggatata
tgaacatgttcctattgctcgttctgcgcatgttggtagtcagcctgtcc
cacctgctctcaatatgtcctgttttcagtcccttacacaaacacctagg
gacttcagcaacaagtatcatataactacacagatggatggattcacagt
gtccctggggctggtctaacatggtcttcagtctgaggtggacctgagct
cggcctgctggaggggattttagattacctctaaggtaccagtgggatgc
gcaagcaggtggtgcctgtataagcagtttgccgcacagctcctgctgat
tgcaaaaagacagacatgtagatgatttcttcttgggaaagccatccaca
ctgggatctttaagtagagaaggttctagcccactgaacggttactgtca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77153613_77154712
seq2: B6Ng01-244G07.b_45_1129

seq1  GAATTCTTAGTTCTTTCCCCCTGATTCCAGATGAGTTTTTCTCTTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTCTTTCCCCCTGATTCCAGATGAGTTTTTCTCTTTGGAT  50

seq1  GTTAAAAGGCTATTGCAGGGCTGGCGAGATGGCTCAGTGGTTAAGGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGGCTATTGCAGGGCTGGCGAGATGGCTCAGTGGTTAAGGGTGC  100

seq1  TGACTGTTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  150

seq1  GCTCACAACCATCTGTAATGAGATCTGATGCCCTCATCTGGAGTCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGTAATGAGATCTGATGCCCTCATCTGGAGTCTCTGA  200

seq1  AGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTAAAAAAAA  250

seq1  AAAAAAAAAAAAAAAAAGGCTATTGCAGTTTCTCACAAGGAGATAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGGCTATTGCAGTTTCTCACAAGGAGATAATATC  300

seq1  TCATGTAGGCACTGCAGTTCAGACCTAAACTTCTTGCCTGAAGTACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGGCACTGCAGTTCAGACCTAAACTTCTTGCCTGAAGTACTATA  350

seq1  GAGAAGGAAGAATTCCTTCACCCTCCTGGCACACATTCTGTGCCACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAGAATTCCTTCACCCTCCTGGCACACATTCTGTGCCACCCTC  400

seq1  AAAGGCAAAATAACATGCACTTCTTCTGAGCTCTCCTAGATTCTAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAAATAACATGCACTTCTTCTGAGCTCTCCTAGATTCTAAGTTC  450

seq1  TATATTTTATATTCCACATTCTATAGTCTACATTCCACATTCTGTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATATTCCACATTCTATAGTCTACATTCCACATTCTGTGTTCC  500

seq1  ACATTCTACATTCCAATTCCATATTCTATTTTCTTCTAAATCATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTACATTCCAATTCCATATTCTATTTTCTTCTAAATCATATATAT  550

seq1  ATTCTATATTCTATGTTCTATATTCTCTATTCTTCTCTATTCTATATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATTCTATGTTCTATATTCTCTATTCTTCTCTATTCTATATTGT  600

seq1  ATTATATATAGTCTATGTTCCATATTCCATATTCTAGGAGATAGAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATAGTCTATGTTCCATATTCCATATTCTAGGAGATAGAAATAG  650

seq1  AATCCCCCACTAGGTGCCAAATACATTTGAGAAATTGCTGCAGTCTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCACTAGGTGCCAAATACATTTGAGAAATTGCTGCAGTCTAGAG  700

seq1  CCTTTCTTGGAGACAACCAATGTATTTGCTCTCCTGAAGGCTCAGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGGAGACAACCAATGTATTTGCTCTCCTGAAGGCTCAGAGAAG  750

seq1  CCCCGCTGTGTGGAAATGCACTTACTGGCATTTTCCTAACCAAGAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTGTGTGGAAATGCACTTACTGGCATTTTCCTAACCAAGAAGCAT  800

seq1  GGAAAGTGTGCTCCCCTGCACATGTGTTCGTGTTTGTGGCAGTGTGTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGTGCTCCCCTGCACATGTGTTCGTGTTTGTGGCAGTGTGTTCC  850

seq1  GATGGCACCAAACTGGGAAAGTCATTTTGAATGACCTCTCTGCTGTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCAAACTGGGAAAGTCATTTTGAATGACCTCTCTGCTGTGTGG  900

seq1  TTTAACTGTTGTCTCCATGAAATCTCTTGTACAGGTAGCCTGACCTAAGT  950
      |||||||||||||||||||||||||||||||||||||| |||| |||   
seq2  TTTAACTGTTGTCTCCATGAAATCTCTTGTACAGGTAG-CTGA-CTA--G  946

seq1  TAGGACTGTCTCGCAGACGTCCTCGATGACAGTCTTTCCAATCCTGCCAC  1000
      ||||||||||||||||||||||||||||||||||||| |||| ||| |||
seq2  TAGGACTGTCTCGCAGACGTCCTCGATGACAGTCTTT-CAAT-CTG-CAC  993

seq1  TGTCTCTCCTAGCTCCCTTTCCTGTCTTACACTGCCTTGATATAAAAGTT  1050
      |||||||| |||||||  || ||||| ||||||| || ||  |||||| |
seq2  TGTCTCTCTTAGCTCC--TTTCTGTC-TACACTG-CTGGAATTAAAAG-T  1038

seq1  GACTCATATGAGATTTATAAAGGCTATC-TATATACCTAACCTTAGAAGA  1099
      ||||||||||||||||||||  |||||| |||||| |||||||| |||||
seq2  GACTCATATGAGATTTATAA--GCTATCTTATATA-CTAACCTT-GAAGA  1084

seq1  T  1100
      |
seq2  T  1085

seq1: chr2_77250693_77251796
seq2: B6Ng01-244G07.g_66_1165 (reverse)

seq1  TGACAGTGACTG-TCAGTGGGCTAGAAACCTTCTCTACTTAAAGGAACCC  49
      ||||||| || | |||||||||||| ||||||||||||||||||  | ||
seq2  TGACAGTAACCGTTCAGTGGGCTAG-AACCTTCTCTACTTAAAG--ATCC  47

seq1  CAGTGTGGATG--CTTCCCAGGAAGAAATCAATTCTACATGTCTGTC-TT  96
      |||||||||||   |||||| ||||||||||  |||||||||||||| ||
seq2  CAGTGTGGATGGCTTTCCCAAGAAGAAATCA--TCTACATGTCTGTCTTT  95

seq1  TTGCAATCAGCAGGGGCTGTGCGGCAAACTGCTTAATACAGGCACCACCT  146
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TTGCAATCAGCAGGAGCTGTGCGGCAAACTGCTT-ATACAGGCACCACCT  144

seq1  GCTTGCCGCAT-CCACTGGTACCTTAGAAGGTAATCTAAAATCCCCTCCA  195
      ||||| ||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GCTTG-CGCATCCCACTGGTACCTTAG-AGGTAATCTAAAATCCCCTCCA  192

seq1  GCAGGCCGAGCTCAGGTCCACCTCAGACTGAAGACCATGTTAGACCCAGC  245
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAGGCCGAGCTCAGGTCCACCTCAGACTGAAGACCATGTTAGA-CCAGC  241

seq1  CCCAGGGACACTGTGAATCCATCCATCTGTGTAGTTATATGATACTTGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGACACTGTGAATCCATCCATCTGTGTAGTTATATGATACTTGTT  291

seq1  GCTGAAGTCCCTAGGTGTTTGTGTAAGGGACTGAAAACAGGACATATTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTCCCTAGGTGTTTGTGTAAGGGACTGAAAACAGGACATATTGA  341

seq1  GAGCAGGTGGGACAGGCTGACTACCAACATGCGCAGAACGAGCAATAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTGGGACAGGCTGACTACCAACATGCGCAGAACGAGCAATAGGA  391

seq1  ACATGTTCATATATCCATACAAACACATACCAGAAAATGGGGAGATACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCATATATCCATACAAACACATACCAGAAAATGGGGAGATACTA  441

seq1  ACTCTATGGATTTTTGTCACAAAAGTAACCTCACGTTCCAAGTCTGAAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGGATTTTTGTCACAAAAGTAACCTCACGTTCCAAGTCTGAAAC  491

seq1  TTCCCAGAATTCCTCAGACATCATTTGTTCTTATTTTAGGCTTTCAGCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAATTCCTCAGACATCATTTGTTCTTATTTTAGGCTTTCAGCTT  541

seq1  TCTTTCTTTCTTTTTTTTTTGTTGTTGTTTTTTGTTTGTTTGTTTTGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTTTTTTTGTTGTTGTTTTTTGTTTGTTTGTTTTGTTT  591

seq1  TGTTTGTTTTTTTTCTTACAGAAGGTCATCTTTGACATAAGCTCTTAAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTTTCTTACAGAAGGTCATCTTTGACATAAGCTCTTAAAG  641

seq1  TATATATTTTTTCATTTTAATTGTGTGTGTGTGTGAGAGAGAGAGTAGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTTTCATTTTAATTGTGTGTGTGTGTGAGAGAGAGAGTAGAT  691

seq1  GCCTCCAATGTTCAAGTGTCAGATCCCCTGGAGCTGCTGTAAGCTGCTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAATGTTCAAGTGTCAGATCCCCTGGAGCTGCTGTAAGCTGCTTG  741

seq1  CCCTGAGTGCTGGGAACCAAAGTTGAGTCCCCTGCAAGCTTCTAACCCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTGCTGGGAACCAAAGTTGAGTCCCCTGCAAGCTTCTAACCCTC  791

seq1  TCTCCAGCCCCGAGACACTGTCTTTTCAAGAGGCTCCACTTTGCTGTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCCGAGACACTGTCTTTTCAAGAGGCTCCACTTTGCTGTTCT  841

seq1  AAGGTACCCTGTAGCTGGAATTAAGCACCTCATTCTAACCTCTAATCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCCTGTAGCTGGAATTAAGCACCTCATTCTAACCTCTAATCTCT  891

seq1  GGACCTGTTGGAGATGGCTCAGCAGGTAGAGGCACCTCCTGCCTACCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTTGGAGATGGCTCAGCAGGTAGAGGCACCTCCTGCCTACCCTG  941

seq1  ACATGGCTCTGTGGATACATGTGCCTGCAGCCAGGTCTCACAGACAGAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCTGTGGATACATGTGCCTGCAGCCAGGTCTCACAGACAGAAT  991

seq1  TTGATCCCCCGGACCCTCAAGATGGAAGAAGAGAACTAACTCCCCCAAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCCCGGACCCTCAAGATGGAAGAAGAGAACTAACTCCCCCAAGC  1041

seq1  TCTCCTCTGATCTCCACACAGGCACCACCGTGGATCAAGACCTTCTCTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGATCTCCACACAGGCACCACCGTGGATCAAGACCTTCTCTCC  1091

seq1  CGTGAATTC  1104
      |||||||||
seq2  CGTGAATTC  1100