BAC Information

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BAC

Clone NameB6Ng01-244I16
Chromosome2 (Build37)
Map Location 151,814,787 - 151,960,791
singlet/doubletdoublet
Overlap gene2310046K01Rik, Scrt2, Srxn1
Upstream gene4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik
Downstream geneTcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244I16.bB6Ng01-244I16.g
ACCGA053649GA053650
length1,1141,054
definitionB6Ng01-244I16.b B6Ng01-244I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,814,787 - 151,815,924)(151,960,150 - 151,960,791)
sequence
gaattcaaggtcaacctggtctatagagcaagtttctgaacggtcgaggc
tacacagagaaacccattcttaaaaagaaaagcagagggtggggtgtttc
tggctgtagaatggccctgacactccactagagggccaagaggagtttaa
aggctgatgagttcaaggctaggaaccaaatagcagaatttgagttagta
ctgctctgagcacctaccataaatttgagtatagactggaaagaaaatag
aggctggatctattacatgtactaagttatattagggagctttatcaagg
gtacaaatgactgattggatatcatctgggatggtgtgggaaaacatacc
agctctagacaggacgttagcagaaaaaggtgtcgtccatgtgatgacag
gggtcagtattgtgcttttgtttttaatgatacggctcctggtgacacaa
ttataaagcctcgctggggactctcatcagttaactaagacctcagaagc
aaatgatccatcttctaatctagtggaacgagggtttggaaaaatggaaa
agggatcttcatttctcaacttccttagtagctgcggggcactgtgtgat
cttgtgcacatgagggttaacccaaagatgagctgaaaacagctacattt
gacaaagctcctgtgtcatagcaaaataacatgttatcatcggtgagtag
ctcagagcaggaaggccaggcaatggtcactgaatgggaagaagaagaaa
tataaacaagggaggaaattgtgggcaatacaaactaaatgtaccaactg
ttctatcaaaagattaaatgagccgggcgtggtggcgcacgcctttaatc
ccagcactcgggaggcagaggcaggaggatttctgagttcgaggccagcc
tggtctacaagtgagttacaggacagccagagctagacagagaaacctgt
ctcgaaaaccaaaaaaatataaaaaagtcaaagatttaatgagacaaaat
tctataaaataaagagtcacttgcagaaattcaatcctctggggtcaagc
actttctgaatcaaaatatatgtttatttcaattctcctctgcattcgcc
atcatcccacagtg
gaattcctggagacacagcagcccacttgaggctgggagtcccatgctaa
ggatgggagagtggaaagatggggcagttgagtctctgatgactctttaa
agagccatagtagcctctgtacaacgtcttcaaagcctgatgtggtcatg
actctcctgtaatcacctgaataaacccaatgtgcacaagattgagctaa
tcaacagtctatcgtggagtggggagggcctcgtgagacctcatccctcc
tggcagctaatggttgttggggaagggagagacgtttcccctctgtggta
tagatgttcataagttgctgtgcttgggcagacagtctcttacatatgct
cctgtaagcagtctgacgaagccattgcataatacatgcaagtgtgtact
tcctggggagatgcaacacaaatctcttcatcccagatcgggaacccgtg
acataccaaagtgtgggtacaaccaaagttcaactgggtgaaccaatgag
ttttattgaggttacttatacaagcatggatgaggggttacttactggaa
cagaaattacccaaagacatcttcatcagcaaagcccatcccagcactgg
tgtcagatgacagagatgggaacttggagcacactgcagacaactcaaca
ggctggacagtgtcctttgcagtgactctggtataaacctcttccataca
gcttggctggtttgtcaccgtggcttggctgagactcttctttgtagctt
agctcagctcctctgagaggaactctcagcgttttattgcttgctctagt
tggtaggggaggcctagtgaatacgtcagtttcagggacttcctgaagct
attttgagttgcttagcttcctgtttaaggagctttcctacaggatggaa
gctgtgctcagaggactagttgggaagggaagggacatcattagagtggg
gggatagagaaggaacagggttgactatacaaaattatatgacatacatg
aaaataattggtggtcaggcatacggacaagctctgggtactgggtacag
gtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151814787_151815924
seq2: B6Ng01-244I16.b_45_1158

seq1  GAATTCAAGGTCAACCTGGTCTATAGAGCAAGTTTCTGAACGGTCGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAACCTGGTCTATAGAGCAAGTTTCTGAACGGTCGAGGC  50

seq1  TACACAGAGAAACCCATTCTTAAAAAGAAAAGCAGAGGGTGGGGTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCATTCTTAAAAAGAAAAGCAGAGGGTGGGGTGTTTC  100

seq1  TGGCTGTAGAATGGCCCTGACACTCCACTAGAGGGCCAAGAGGAGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTAGAATGGCCCTGACACTCCACTAGAGGGCCAAGAGGAGTTTAA  150

seq1  AGGCTGATGAGTTCAAGGCTAGGAACCAAATAGCAGAATTTGAGTTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGAGTTCAAGGCTAGGAACCAAATAGCAGAATTTGAGTTAGTA  200

seq1  CTGCTCTGAGCACCTACCATAAATTTGAGTATAGACTGGAAAGAAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGAGCACCTACCATAAATTTGAGTATAGACTGGAAAGAAAATAG  250

seq1  AGGCTGGATCTATTACATGTACTAAGTTATATTAGGGAGCTTTATCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATCTATTACATGTACTAAGTTATATTAGGGAGCTTTATCAAGG  300

seq1  GTACAAATGACTGATTGGATATCATCTGGGATGGTGTGGGAAAACATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATGACTGATTGGATATCATCTGGGATGGTGTGGGAAAACATACC  350

seq1  AGCTCTAGACAGGACGTTAGCAGAAAAAGGTGTCGTCCATGTGATGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGACAGGACGTTAGCAGAAAAAGGTGTCGTCCATGTGATGACAG  400

seq1  GGGTCAGTATTGTGCTTTTGTTTTTAATGATACGGCTCCTGGTGACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTATTGTGCTTTTGTTTTTAATGATACGGCTCCTGGTGACACAA  450

seq1  TTATAAAGCCTCGCTGGGGACTCTCATCAGTTAACTAAGACCTCAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCCTCGCTGGGGACTCTCATCAGTTAACTAAGACCTCAGAAGC  500

seq1  AAATGATCCATCTTCTAATCTAGTGGAACGAGGGTTTGGAAAAATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCCATCTTCTAATCTAGTGGAACGAGGGTTTGGAAAAATGGAAA  550

seq1  AGGGATCTTCATTTCTCAACTTCCTTAGTAGCTGCGGGGCACTGTGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTTCATTTCTCAACTTCCTTAGTAGCTGCGGGGCACTGTGTGAT  600

seq1  CTTGTGCACATGAGGGTTAACCCAAAGATGAGCTGAAAACAGCTACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCACATGAGGGTTAACCCAAAGATGAGCTGAAAACAGCTACATTT  650

seq1  GACAAAGCTCCTGTGTCATAGCAAAATAACATGTTATCATCGGTGAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCTCCTGTGTCATAGCAAAATAACATGTTATCATCGGTGAGTAG  700

seq1  CTCAGAGCAGGAAGGCCAGGCAATGGTCACTGAATGGGAAGAAGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCAGGAAGGCCAGGCAATGGTCACTGAATGGGAAGAAGAAGAAA  750

seq1  TATAAACAAGGGAGGAAATTGTGGGCAATACAAACTAAATGTACCAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAGGGAGGAAATTGTGGGCAATACAAACTAAATGTACCAACTG  800

seq1  TTCTATCAAAAGATTAAATGAGCCGGGCGTGGTGGCGCACGCCTTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAAAAGATTAAATGAGCCGGGCGTGGTGGCGCACGCCTTTAATC  850

seq1  CCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCC  900

seq1  TGGTCTACAAAGTGAGTTACAGGACAGCCAGAGCTAGACAGAGAAACCCT  950
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TGGTCTAC-AAGTGAGTTACAGGACAGCCAGAGCTAGACAGAGAAA-CCT  948

seq1  GTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGTCAAAAGATTA  1000
      |||||||||| |          ||||||| | ||||||||| ||||||| 
seq2  GTCTCGAAAACC----------AAAAAAATATAAAAAAGTC-AAAGATTT  987

seq1  AATGAGACAAAAATTCTATTAAAAAAATAAAGAAGTCACTTGGCAGAAAT  1050
      |||||||| ||||||||||    ||||||||| |||||||| ||||||||
seq2  AATGAGAC-AAAATTCTAT----AAAATAAAG-AGTCACTT-GCAGAAAT  1030

seq1  TCAAATTCCTCTGGGGTC-AGCACTTCCTGAAATCAAAATATATGTTTAA  1099
      ||||  |||||||||||| ||||||| ||| ||||||||||||||||| |
seq2  TCAA--TCCTCTGGGGTCAAGCACTTTCTG-AATCAAAATATATGTTT-A  1076

seq1  TTTCATTTCTCCTCTGCATTCGCCAATCATCCCACAGTG  1138
      ||||| |||||||||||||||||| ||||||||||||||
seq2  TTTCAATTCTCCTCTGCATTCGCC-ATCATCCCACAGTG  1114

seq1: chr2_151960150_151960791
seq2: B6Ng01-244I16.g_480_1120 (reverse)

seq1  TCACCTGTACCAAGTAACCAGAGC-TGTCCCTTTGCCTGACCAC--ATTA  47
      ||||||||||| |||| ||||||| ||||| | |||||||||||  ||||
seq2  TCACCTGTACCCAGTACCCAGAGCTTGTCCGTATGCCTGACCACCAATTA  50

seq1  TTTTCATGTATGTC-TATAATTTTGTTATAGTCACCCCTGTTCCCTTCTC  96
      |||||||||||||| |||||||||| |||||||| ||||||| |||||||
seq2  TTTTCATGTATGTCATATAATTTTG-TATAGTCAACCCTGTT-CCTTCTC  98

seq1  TTATCCCCCACTCCTATTGATGTCCCTTCCCTTCCCAACTAGTCCTCCTG  146
      |   |||||||| ||| ||||||||||||||||||||||||||||| |||
seq2  TATCCCCCCACT-CTAATGATGTCCCTTCCCTTCCCAACTAGTCCT-CTG  146

seq1  AGCACAGCTTCCATCCTGTAGGAAAGCTCCTTAAACAGGAAGCTAAGCAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTTCCATCCTGTAGGAAAGCTCCTTAAACAGGAAGCTAAGCAA  196

seq1  CTCAAAATAGCTTCAGGAAGTCCCTGAAACTGACCGTATTCACTAGGCCT  246
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAAAATAGCTTCAGGAAGTCCCTGAAACTGA-CGTATTCACTAGGCCT  245

seq1  CCCCTACCAACTAGAGCAAGCAATAAAACGCTGAGAGTTCCTCTCAGAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCAACTAGAGCAAGCAATAAAACGCTGAGAGTTCCTCTCAGAGG  295

seq1  AGCTGAGCTAAGCTACAAAGAAGAGTCTCAGCCAAGCCACGGTGACAAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCTAAGCTACAAAGAAGAGTCTCAGCCAAGCCACGGTGACAAAC  345

seq1  CAGCCAAGCTGTATGGAAGAGGTTTATACCAGAGTCACTGCAAAGGACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGCTGTATGGAAGAGGTTTATACCAGAGTCACTGCAAAGGACAC  395

seq1  TGTCCAGCCTGTTGAGTTGTCTGCAGTGTGCTCCAAGTTCCCATCTCTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCCTGTTGAGTTGTCTGCAGTGTGCTCCAAGTTCCCATCTCTGT  445

seq1  CATCTGACACCAGTGCTGGGATGGGCTTTGCTGATGAAGATGTCTTTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACACCAGTGCTGGGATGGGCTTTGCTGATGAAGATGTCTTTGGG  495

seq1  TAATTTCTGTTCCAGTAAGTAACCCCTCATCCATGCTTGTATAAGTAACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGTTCCAGTAAGTAACCCCTCATCCATGCTTGTATAAGTAACC  545

seq1  TCAATAAAACTCATTGGTTCACCCAGTTGAACTTTGGTTGTACCCACACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAACTCATTGGTTCACCCAGTTGAACTTTGGTTGTACCCACACT  595

seq1  TTGGTATGTCACGGGTTCCCGATCTGGGATGAAGAGATTTGTGTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGTCACGGGTTCCCGATCTGGGATGAAGAGATTTGTGTTG  641