BAC Information

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BAC

Clone NameB6Ng01-244O17
Chromosome1 (Build37)2 (Build37)
Map Location 182,862,711 - 182,862,771110,493,943 - 110,494,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2
Downstream geneLefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244O17.bB6Ng01-244O17.g
ACCGA053938GA053939
length1,008893
definitionB6Ng01-244O17.b B6Ng01-244O17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(182,862,711 - 182,862,771)(110,493,943 - 110,494,836)
sequence
gaattctctggtagagttttggtcattgcttatgtatactatcatatcac
ctgcaaagtaatacctttaatacttttttaccaatttgtatccccttgat
ctctttttgttcacctatcattctagctaacactttgagtacaatattga
atagacatgggaagtgtgggtgtccttgtcttgttcccgatttcagtagg
attgcttcaagtatgtctccatttgattagattctggctgtttgtttgca
gtaaattgcttttattatgtttaggtatagaccttgaattgctgatctct
ccaatacttttaatgtgaaaggctgttgtattttgtcaaatgctttttct
gcatctaaagaggtgatcatgtgattttttttctttgagtttgtttagtg
tattaggttaatggattttcgtatattaagccaaccttgcctacctagga
tgaaacgtacttgatcgaggtggatgatggttttgatgtgttcttgcatt
cagtttgcaagaattttattgagtatttttgcatcgatattcataagtga
gattggtttgaagttcttttctttggttgggaccttgtgtggtttaggta
tcagagtaattgtggctttgcagaatgagttaggtagtgttccttccatt
tctttatatatacatatattattcggtattttcctcatttacatttccaa
tgctatcccaaaaagtcccccataacctcccccccaactcccctacccac
ccactcccactttttgtccctggcattgccctgtactgggggcatataaa
gtttgcaagtccaaatgggcctctctttccagtgatggccgactaggcca
tcttttgatatatatgcagctagagtcaagatctcagggtactggttagt
tcatatgtgtccacctataagggttgcagatccctttagctcctgggtac
tttctccagttcatcattggggggcctgtgatccatcccatagctgactg
gtagcctc
gaattccagttccattccatggaaattgtgttggttatttccacagtgat
tctcaagacctggtcaaaccctcatcttcttggctcatatcctatactct
cttgaagttatggtggtctgattgagaaatgcctcccataggctcatgtg
tttgactacttagtccccacttggtagtactgtttgtgaagggtatagaa
tctgtagaaggtggcaattttctggaggacattcatcactatgggtaggc
tttgaggatttttagctgcattccatttactgtttcttctctctgtttct
cgtgactggatgaaatgtaatcagcttcttgcttttggcttgctattatg
cctttctcaccattaattatttatcctggtggaaccatagaccaaaataa
agcctttctttcttaaaacaatatttttaaatattatgtatatgtatttt
tacacatttatttttgtacatcacatgtgtgactggttccagagcctgcg
tgaaaatatactggatctcctggaaatgtatttacagatggttataagcc
actaagtgggtgctgggagccaaagtggggtcctctgaaagagcaccagg
tacagtatgcttatctgctggtctatttcttcacaaacccctatttttgc
ttaaaagaattacttgctctatgaggttttgatagtgggagagtaatagt
atgtgtaaagaaacaaagtgcttgggtgtgcctcagatgacctaatcaaa
ttcattttctcatctgcttctagaacagacattattagtattaatgtgat
atcgcacctgcaccttaatatgaaattttttatttcattcttttatgtgg
tagatgcgtattatgtgtgttagtgtggatttctgtgtttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182862711_182862771
seq2: B6Ng01-244O17.b_723_783 (reverse)

seq1  GGGGGGGTAGGGCATGGGGGAC-TTTTGGGATAGCATTGGAAATGTAAAT  49
       |||||| |||  ||||||||| |||||||||||||||||||||||||||
seq2  -GGGGGGGAGGTTATGGGGGACTTTTTGGGATAGCATTGGAAATGTAAAT  49

seq1  GAAGAAAATACC  61
      || |||||||||
seq2  GAGGAAAATACC  61

seq1: chr2_110493943_110494836
seq2: B6Ng01-244O17.g_69_961

seq1  GAATTCCAGTTCCATTCCATGGAAATTGTGTTGGTTATTTCCACAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCCATTCCATGGAAATTGTGTTGGTTATTTCCACAGTGAT  50

seq1  TCTCAAGACCTGGTCAAACCCTCATCTTCTTGGCTCATATCCTATACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGACCTGGTCAAACCCTCATCTTCTTGGCTCATATCCTATACTCT  100

seq1  CTTGAAGTTATGGTGGTCTGATTGAGAAATGCCTCCCATAGGCTCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTTATGGTGGTCTGATTGAGAAATGCCTCCCATAGGCTCATGTG  150

seq1  TTTGACTACTTAGTCCCCACTTGGTAGTACTGTTTGTGAAGGGTATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACTTAGTCCCCACTTGGTAGTACTGTTTGTGAAGGGTATAGAA  200

seq1  TCTGTAGAAGGTGGCAATTTTCTGGAGGACATTCATCACTATGGGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAAGGTGGCAATTTTCTGGAGGACATTCATCACTATGGGTAGGC  250

seq1  TTTGAGGATTTTTAGCTGCATTCCATTTACTGTTTCTTCTCTCTGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATTTTTAGCTGCATTCCATTTACTGTTTCTTCTCTCTGTTTCT  300

seq1  CGTGACTGGATGAAATGTAATCAGCTTCTTGCTTTTGGCTTGCTATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTGGATGAAATGTAATCAGCTTCTTGCTTTTGGCTTGCTATTATG  350

seq1  CCTTTCTCACCATTAATTATTTATCCTGGTGGAACCATAGACCAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCACCATTAATTATTTATCCTGGTGGAACCATAGACCAAAATAA  400

seq1  AGCCTTTCTTTCTTAAAACAATATTTTTAAATATTATGTATATGTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTTTCTTAAAACAATATTTTTAAATATTATGTATATGTATTTT  450

seq1  TACACATTTATTTTTGTACATCACATGTGTGACTGGTTCCAGAGCCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTATTTTTGTACATCACATGTGTGACTGGTTCCAGAGCCTGCG  500

seq1  TGAAAATATACTGGATCTCCTGGAAATGTATTTACAGATGGTTATAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATACTGGATCTCCTGGAAATGTATTTACAGATGGTTATAAGCC  550

seq1  ACTAAGTGGGTGCTGGGAGCCAAAGTGGGGTCCTCTGAAAGAGCACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGGGTGCTGGGAGCCAAAGTGGGGTCCTCTGAAAGAGCACCAGG  600

seq1  TACAGTATGCTTATCTGCTGGTCTATTTCTTCACAAACCCCTATTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATGCTTATCTGCTGGTCTATTTCTTCACAAACCCCTATTTTTGC  650

seq1  TTAAAAGAATTACTTGCTCTATGAGGTTTTGATAGTGGGAGAGTAATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATTACTTGCTCTATGAGGTTTTGATAGTGGGAGAGTAATAGT  700

seq1  ATGTGTAAAGAAACAAAGTGCTTGGGTGTGCCTCAGATGACCTAATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAAAGAAACAAAGTGCTTGGGTGTGCCTCAGATGACCTAATCAAA  750

seq1  TTCATTTTCTCATCTGCTTCTAGAACAGACATTATTAGTATTAATGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTCATCTGCTTCTAGAACAGACATTATTAGTATTAATGTGAT  800

seq1  ATCGCACCTGCACCTTAATATGAAATTTTTTATTTCATTCTTTTATGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCACCTGCACCTTAATATGAAATTTTTTATTTCATTCTTTTATGTGG  850

seq1  TAGATGCGTATTTATGTGTGTTAGTGTGGATTTCTGTGTTTATG  894
      |||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGATGCGTA-TTATGTGTGTTAGTGTGGATTTCTGTGTTTATG  893